Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Reverse (-)

4420215 .. 4420997

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTCCGACTCTTCCTCCCTCGGAATGTCCTTGGCTCAAAAACCAAACTCCCTCTCATATTTTACTACCACGGTGGTGCGTTTCTCTATTTCAGCTCAACTACAACTGTTTTCCATGAGTTCTGTTCCAACATGGCTTTGGAACTCCAAGCTATTGTTGTCTCCGTGGACTACCGTCTTGCCCCTGAACACCGCCTCCCTGCAGCCTACGAGGATGCCATAGATGCGTTGCACTGGATCAAGACCACAGAGGAAGAGTGGGTAAGAGAATTTGCTGATTTCTCAAGCTGTTTTTTAATGGGTACTAGTTCTGGTGGAAACCTAGCTTACCATGCTGGGCTTCTTGCTTGTGAAGTTAGAGATCACCTTTGGCCTTTGGAAATCAAAGGACTAATGTTGCACCATCCCTTTTTTGGTGGATCCGAAAGGACCGAGTCGGAACTGAAGATGGAGCATGATCGAATTTTGCCACTACGGGCAAGCGATGGAGCGTGGAAATTGGCGTTGCCTATTGGTGCTGACCGTGATCATGAGTATTGCAATCCAACGGTGGGCGATAGAGATGGTATTTGGGCTGCGATTCGGGCCATGGATTGTAGGGTCTTGGTTCTGGGTTGTTATGGAGATCCGATGATTGAGCGACAAATGGGGTTGGCGAAAATGGTAGAGGAGAAGGGTGTACGAACGGTGACTCATTTTGGCGATGGTTGTCATGGTTTGGAAATAACTGACCCGTCCAAAGCTCCGGGTTTATTTGTCGACTTGAAAAATTTCATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

260

Amino Acids

29.27

Weight (kDa)

5.61

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	13 - 116	4.2e-14	BD-FAE
Abhydrolase_3	PF07859	20 - 238	5.7e-49	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	759
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	4 cut(s)	245, 414, 427, 620
AcsI	RAATTY	3 cut(s)	269, 462, 769
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	304, 681
AfiI	CCNNNNNNNGG	2 cut(s)	413, 551
AgsI	TTSAA	1 cut(s)	766
AhlI	ACTAGT	1 cut(s)	305
AleI	CACNNNNGTG	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	96, 152, 288, 326, 743
AluI	AGCT	5 cut(s)	96, 152, 288, 326, 743
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	4 cut(s)	245, 414, 427, 620
AoxI	GGCC	2 cut(s)	371, 585
ApeKI	GCWGC	2 cut(s)	203, 575
ApoI	RAATTY	3 cut(s)	269, 462, 769
Asp700I	GAANNNNTTC	1 cut(s)	770
AspS9I	GGNCC	3 cut(s)	4, 429, 585
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	2 cut(s)	356, 700
AvaII	GGWCC	2 cut(s)	4, 429
BamHI	GGATCC	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	215, 562
BccI	CCATC	5 cut(s)	411, 442, 479, 557, 698
BclI	TGATCA	1 cut(s)	526
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	166
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	2 cut(s)	306, 323
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	204, 576
BlsI	GCNGC	2 cut(s)	205, 577
Bme1390I	CCNGG	1 cut(s)	747
Bme18I	GGWCC	2 cut(s)	4, 429
BmgT120I	GGNCC	3 cut(s)	4, 429, 585
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	205, 214
BoxI	GACNNNNGTC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	747
BsaJI	CCNNGG	5 cut(s)	20, 31, 70, 165, 588
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 551
Bse1I	ACTGG	1 cut(s)	239
BseDI	CCNNGG	5 cut(s)	20, 31, 70, 165, 588
BseGI	GGATG	2 cut(s)	220, 403
BseLI	CCNNNNNNNGG	2 cut(s)	413, 551
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	215, 562
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	2 cut(s)	373, 587
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	413, 551
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	373, 587
Bsp143I	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
Bsp19I	CCATGG	1 cut(s)	588
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	2 cut(s)	373, 587
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	4 cut(s)	245, 414, 427, 620
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	5 cut(s)	20, 31, 70, 165, 588
BssMI	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
BssT1I	CCWWGG	2 cut(s)	31, 588
Bst4CI	ACNGT	6 cut(s)	74, 109, 176, 524, 550, 688
Bst6I	CTCTTC	2 cut(s)	17, 249
BstC8I	GCNNGC	1 cut(s)	481
BstDSI	CCRYGG	3 cut(s)	70, 165, 588
BstF5I	GGATG	2 cut(s)	220, 403
BstKTI	GATC	6 cut(s)	240, 364, 422, 460, 529, 628
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 332, 584
BstPAI	GACNNNNGTC	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	215, 562
BstX2I	RGATCY	2 cut(s)	419, 625
BstYI	RGATCY	2 cut(s)	419, 625
BsuRI	GGCC	2 cut(s)	373, 587
BtgI	CCRYGG	3 cut(s)	70, 165, 588
BtgZI	GCGATG	2 cut(s)	498, 717
BtsCI	GGATG	2 cut(s)	220, 403
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	481
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	4, 429, 585
Csp6I	GTAC	2 cut(s)	303, 680
CviAII	CATG	7 cut(s)	116, 133, 332, 455, 530, 589, 713
CviQI	GTAC	2 cut(s)	303, 680
DpnI	GATC	6 cut(s)	239, 363, 421, 459, 528, 627
DpnII	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
Eam1104I	CTCTTC	2 cut(s)	17, 249
EarI	CTCTTC	2 cut(s)	17, 249
Eco130I	CCWWGG	2 cut(s)	31, 588
Eco47I	GGWCC	2 cut(s)	4, 429
Eco57I	CTGAAG	1 cut(s)	464
EcoT14I	CCWWGG	2 cut(s)	31, 588
ErhI	CCWWGG	2 cut(s)	31, 588
FaeI	CATG	7 cut(s)	119, 136, 335, 458, 533, 592, 716
FatI	CATG	7 cut(s)	115, 132, 331, 454, 529, 588, 712
FbaI	TGATCA	1 cut(s)	526
FblI	GTMKAC	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	204, 576
FokI	GGATG	2 cut(s)	227, 390
Fsp4HI	GCNGC	2 cut(s)	204, 576
FspBI	CTAG	2 cut(s)	306, 323
GluI	GCNGC	2 cut(s)	204, 576
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	373, 587
HapII	CCGG	1 cut(s)	746
Hin1II	CATG	7 cut(s)	119, 136, 335, 458, 533, 592, 716
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HinfI	GANTC	4 cut(s)	9, 434, 580, 691
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	2 cut(s)	356, 700
Hpy166II	GTNNAC	3 cut(s)	169, 680, 760
Hpy188I	TCNGA	5 cut(s)	8, 24, 424, 439, 630
Hpy188III	TCNNGA	2 cut(s)	241, 530
Hpy8I	GTNNAC	3 cut(s)	169, 680, 760
HpyAV	CCTTC	1 cut(s)	667
HpyCH4III	ACNGT	6 cut(s)	74, 109, 176, 524, 550, 688
HpyCH4V	TGCA	4 cut(s)	203, 232, 400, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 332, 584
Hsp92II	CATG	7 cut(s)	119, 136, 335, 458, 533, 592, 716
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
LmnI	GCTCC	3 cut(s)	451, 488, 748
LpnPI	CCDG	7 cut(s)	198, 213, 220, 297, 321, 596, 759
Lsp1109I	GCAGC	2 cut(s)	215, 562
LweI	GCATC	2 cut(s)	205, 214
MaeI	CTAG	2 cut(s)	306, 323
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	6 cut(s)	239, 363, 421, 459, 528, 627
MboI	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
MboII	GAAGA	3 cut(s)	4, 266, 457
MflI	RGATCY	2 cut(s)	419, 625
MluCI	AATT	4 cut(s)	269, 462, 497, 769
MlyI	GAGTC	3 cut(s)	3, 443, 685
MmeI	TCCRAC	4 cut(s)	31, 153, 417, 569
MnlI	CCTC	7 cut(s)	26, 30, 63, 205, 206, 244, 661
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	224, 332, 584
NciI	CCSGG	1 cut(s)	747
NcoI	CCATGG	1 cut(s)	588
NdeII	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
NlaIII	CATG	7 cut(s)	119, 136, 335, 458, 533, 592, 716
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	688
OliI	CACNNNNGTG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	580
PflFI	GACNNNGTC	1 cut(s)	433
PkrI	GCNGC	2 cut(s)	205, 577
PleI	GAGTC	3 cut(s)	3, 442, 685
PpsI	GAGTC	3 cut(s)	3, 442, 685
PshAI	GACNNNNGTC	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	3 cut(s)	4, 429, 585
PstI	CTGCAG	1 cut(s)	205
PsuI	RGATCY	2 cut(s)	419, 625
PsyI	GACNNNGTC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	304, 681
RsaNI	GTAC	2 cut(s)	303, 680
RseI	CAYNNNNRTG	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	204, 576
Sau3AI	GATC	6 cut(s)	237, 361, 419, 457, 526, 625
Sau96I	GGNCC	3 cut(s)	4, 429, 585
SchI	GAGTC	3 cut(s)	3, 443, 685
ScrFI	CCNGG	1 cut(s)	747
SetI	ASST	7 cut(s)	98, 154, 290, 324, 328, 369, 745
SfaNI	GCATC	2 cut(s)	205, 214
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	4, 429
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	4 cut(s)	269, 462, 497, 769
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	2 cut(s)	306, 323
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	2 cut(s)	31, 588
TaaI	ACNGT	6 cut(s)	74, 109, 176, 524, 550, 688
TaqI	TCGA	2 cut(s)	460, 759
TaqII	GACCGA	1 cut(s)	446
TasI	AATT	4 cut(s)	269, 462, 497, 769
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	2 cut(s)	203, 575
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	1 cut(s)	763
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	239
Tth111I	GACNNNGTC	1 cut(s)	433
VpaK11BI	GGWCC	2 cut(s)	4, 429
XapI	RAATTY	3 cut(s)	269, 462, 769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 410
XmiI	GTMKAC	1 cut(s)	759
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	2 cut(s)	306, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.