Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000774.1

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

91119 .. 92908

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000774.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgtccacgtggcttaacaccatcgaggacgacgatagacagagggacgcaagcggacagaagaaacctctccaaagctcagaaggctcccaaactcgtgaagaaccatcaagctgccaaatagccggtctcttcacctcgccgacttcagacaagcaggggaaatcacctacaagctcggaagtcgtcaaacacgcgaaggatcaacaagcaccaaacacatttcaagcctctacagcccttgatcatctgtcgtcttcaagtcgtcaacaaagcaaaacttctgccaagttcttcatcaagctcgtggagaatcaacaagcaccaaacacacgtgctggttcatcccccaccaaagccgaagaacacttatcacgtgacagaactagtggcctaaatccgatcaagatcaagcttctacagcccttggtcaatcgtcttcctcaaatcatcaacatagcaagaagctcacactacaaccgttcgattcaagatcaagtgctcgccacccttggatcaaatcaacgattttccttgtttacaaattggcacgcccaatgggatcatctctacctctcatctctttctctgacaatctcaagtcatcatcttcagcatatggcttcaaagatgattcaactcaaatcaacaaacaagaccaataaggtagctactctgaaaatgagtaaaaaccttaaaaatcataccgcttggagtgagtcgtctcaactcgcgacattcataactcatccatctcggtcacatcagccgatcatcacttcgacaacaatgggggcaaacctcactaagaaaagatggtcagcaagctcaagcgactcaagggaacattcttctttgcacactgccagtgttgatcaacgtacacacctacgccccagttcgtcttttgataaccaaacggaagagacattggaagattcctcttttgctatgcaagtcatggtaggggtcaccaccgtggaagaacagacgactcaaatagcccaattggctgaagcagttgagaagctacagaaaactattgaagagaaggatatggaaattgctgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

357

Amino Acids

39.72

Weight (kDa)

9.18

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	197, 734
AciI	CCGC	2 cut(s)	54, 708
AclWI	GGATC	3 cut(s)	210, 523, 570
AcuI	CTGAAG	3 cut(s)	132, 596, 1035
AcvI	CACGTG	3 cut(s)	9, 335, 377
AfaI	GTAC	1 cut(s)	883
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	6 cut(s)	227, 261, 491, 627, 638, 1046
AhlI	ACTAGT	1 cut(s)	386
AleI	CACNNNNGTG	1 cut(s)	977
AluBI	AGCT	9 cut(s)	78, 114, 177, 304, 415, 468, 671, 828, 1030
AluI	AGCT	9 cut(s)	78, 114, 177, 304, 415, 468, 671, 828, 1030
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	3 cut(s)	134, 729, 920
AlwI	GGATC	3 cut(s)	210, 523, 570
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	2 cut(s)	114, 1067
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AsuHPI	GGTGA	3 cut(s)	127, 159, 964
BauI	CACGAG	2 cut(s)	96, 305
BbrPI	CACGTG	3 cut(s)	9, 335, 377
BbsI	GAAGAC	2 cut(s)	249, 431
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	101, 1054
BccI	CCATC	4 cut(s)	29, 115, 760, 810
BclI	TGATCA	2 cut(s)	244, 874
BcoDI	GTCTC	3 cut(s)	134, 729, 920
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	1 cut(s)	387
BfmI	CTRYAG	3 cut(s)	234, 419, 1031
BglI	GCCNNNNNGGC	1 cut(s)	1010
BisI	GCNGC	2 cut(s)	115, 1068
BlsI	GCNGC	2 cut(s)	116, 1069
BmiI	GGNNCC	1 cut(s)	88
BmrI	ACTGGG	1 cut(s)	891
BmuI	ACTGGG	1 cut(s)	891
BpiI	GAAGAC	2 cut(s)	249, 431
BpuEI	CTTGAG	3 cut(s)	583, 814, 823
BsaAI	YACGTR	3 cut(s)	9, 335, 377
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	426, 511, 978
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	2 cut(s)	867, 897
Bse8I	GATNNNNATC	1 cut(s)	407
BseDI	CCNNGG	3 cut(s)	426, 511, 978
BseGI	GGATG	2 cut(s)	344, 748
BseJI	GATNNNNATC	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	2 cut(s)	867, 897
BseXI	GCAGC	2 cut(s)	101, 1054
Bsh1236I	CGCG	2 cut(s)	197, 734
BshFI	GGCC	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	3 cut(s)	134, 729, 920
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	393
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
Bsp68I	TCGCGA	1 cut(s)	734
BspACI	CCGC	2 cut(s)	54, 708
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	2 cut(s)	197, 734
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	210, 523, 570
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	867, 897
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	426, 511, 978
BssMI	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
BssSI	CACGAG	2 cut(s)	96, 305
BssT1I	CCWWGG	2 cut(s)	426, 511
Bst2BI	CACGAG	2 cut(s)	96, 305
Bst4CI	ACNGT	2 cut(s)	482, 979
Bst6I	CTCTTC	3 cut(s)	137, 918, 1041
BstBAI	YACGTR	3 cut(s)	9, 335, 377
BstC8I	GCNNGC	4 cut(s)	52, 504, 552, 826
BstDEI	CTNAG	2 cut(s)	79, 807
BstDSI	CCRYGG	1 cut(s)	978
BstEII	GGTNACC	1 cut(s)	970
BstF5I	GGATG	2 cut(s)	344, 748
BstFNI	CGCG	2 cut(s)	197, 734
BstKTI	GATC	9 cut(s)	205, 247, 405, 411, 496, 518, 565, 774, 877
BstMAI	GTCTC	3 cut(s)	134, 729, 920
BstMBI	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 236, 421, 1010
BstPI	GGTNACC	1 cut(s)	970
BstSFI	CTRYAG	3 cut(s)	234, 419, 1031
BstUI	CGCG	2 cut(s)	197, 734
BstV1I	GCAGC	2 cut(s)	101, 1054
BstV2I	GAAGAC	2 cut(s)	249, 431
BsuRI	GGCC	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	344, 748
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	2 cut(s)	861, 874
BtuMI	TCGCGA	1 cut(s)	734
Cac8I	GCNNGC	4 cut(s)	52, 504, 552, 826
Cfr10I	RCCGGY	1 cut(s)	125
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	882
CviAII	CATG	1 cut(s)	961
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	2 cut(s)	79, 807
DpnI	GATC	9 cut(s)	204, 246, 404, 410, 495, 517, 564, 773, 876
DpnII	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
Eam1104I	CTCTTC	3 cut(s)	137, 918, 1041
EarI	CTCTTC	3 cut(s)	137, 918, 1041
Eco130I	CCWWGG	2 cut(s)	426, 511
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	3 cut(s)	132, 596, 1035
Eco72I	CACGTG	3 cut(s)	9, 335, 377
Eco91I	GGTNACC	1 cut(s)	970
EcoO65I	GGTNACC	1 cut(s)	970
EcoT14I	CCWWGG	2 cut(s)	426, 511
ErhI	CCWWGG	2 cut(s)	426, 511
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	1 cut(s)	964
FaiI	YATR	8 cut(s)	458, 618, 620, 705, 743, 953, 962, 1058
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	960
FauNDI	CATATG	1 cut(s)	618
FbaI	TGATCA	2 cut(s)	244, 874
Fnu4HI	GCNGC	2 cut(s)	115, 1068
FokI	GGATG	2 cut(s)	331, 735
Fsp4HI	GCNGC	2 cut(s)	115, 1068
FspBI	CTAG	1 cut(s)	387
GluI	GCNGC	2 cut(s)	115, 1068
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	964
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	7 cut(s)	313, 487, 634, 719, 836, 938, 994
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	3 cut(s)	127, 159, 964
Hpy166II	GTNNAC	4 cut(s)	6, 269, 540, 884
Hpy188I	TCNGA	6 cut(s)	82, 151, 181, 402, 591, 678
Hpy188III	TCNNGA	4 cut(s)	98, 406, 491, 733
Hpy8I	GTNNAC	4 cut(s)	6, 269, 540, 884
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	77, 193, 1045
HpyCH4III	ACNGT	2 cut(s)	482, 979
HpyCH4IV	ACGT	4 cut(s)	8, 334, 376, 880
HpyCH4V	TGCA	2 cut(s)	859, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 236, 421, 1010
HpyF3I	CTNAG	2 cut(s)	79, 807
HpySE526I	ACGT	4 cut(s)	8, 334, 376, 880
Hsp92II	CATG	1 cut(s)	964
Ksp22I	TGATCA	2 cut(s)	244, 874
Kzo9I	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	139, 143, 324, 880, 910
Lsp1109I	GCAGC	2 cut(s)	101, 1054
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	4 cut(s)	8, 334, 376, 880
MaeIII	GTNAC	3 cut(s)	377, 759, 970
MalI	GATC	9 cut(s)	204, 246, 404, 410, 495, 517, 564, 773, 876
MboI	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
MfeI	CAATTG	1 cut(s)	1007
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	3 cut(s)	544, 1007, 1062
MlyI	GAGTC	3 cut(s)	728, 830, 988
MnlI	CCTC	9 cut(s)	19, 36, 78, 148, 241, 453, 584, 812, 952
MseI	TTAA	2 cut(s)	15, 696
MslI	CAYNNNNRTG	1 cut(s)	977
MspI	CCGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	1007
MvnI	CGCG	2 cut(s)	197, 734
MwoI	GCNNNNNNNGC	4 cut(s)	84, 236, 421, 1010
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
NlaIII	CATG	1 cut(s)	964
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	377, 759, 970
NruI	TCGCGA	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	977
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	313, 487, 634, 938
PkrI	GCNGC	2 cut(s)	116, 1069
PleI	GAGTC	3 cut(s)	727, 830, 988
PmaCI	CACGTG	3 cut(s)	9, 335, 377
PmlI	CACGTG	3 cut(s)	9, 335, 377
PpsI	GAGTC	3 cut(s)	727, 830, 988
Ppu21I	YACGTR	3 cut(s)	9, 335, 377
PspCI	CACGTG	3 cut(s)	9, 335, 377
PspEI	GGTNACC	1 cut(s)	970
PspN4I	GGNNCC	1 cut(s)	88
RruI	TCGCGA	1 cut(s)	734
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
RseI	CAYNNNNRTG	1 cut(s)	977
SaqAI	TTAA	2 cut(s)	15, 696
SatI	GCNGC	2 cut(s)	115, 1068
Sau3AI	GATC	9 cut(s)	202, 244, 402, 408, 493, 515, 562, 771, 874
SchI	GAGTC	3 cut(s)	728, 830, 988
SduI	GDGCHC	1 cut(s)	504
SfcI	CTRYAG	3 cut(s)	234, 419, 1031
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	3 cut(s)	598, 829, 838
SmoI	CTYRAG	3 cut(s)	598, 829, 838
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	3 cut(s)	544, 1007, 1062
SsiI	CCGC	2 cut(s)	54, 708
SspMI	CTAG	1 cut(s)	387
StyI	CCWWGG	2 cut(s)	426, 511
TaaI	ACNGT	2 cut(s)	482, 979
TaiI	ACGT	4 cut(s)	11, 337, 379, 883
TaqI	TCGA	3 cut(s)	24, 485, 782
TaqII	GACCGA	1 cut(s)	747
TasI	AATT	3 cut(s)	544, 1007, 1062
TfiI	GAWTC	4 cut(s)	313, 487, 634, 938
Tru1I	TTAA	2 cut(s)	15, 696
Tru9I	TTAA	2 cut(s)	15, 696
TscAI	CASTG	2 cut(s)	868, 874
TseFI	GTSAC	3 cut(s)	377, 759, 970
TseI	GCWGC	2 cut(s)	114, 1067
Tsp45I	GTSAC	3 cut(s)	377, 759, 970
TspDTI	ATGAA	3 cut(s)	286, 333, 730
TspGWI	ACGGA	1 cut(s)	935
TspRI	CASTG	2 cut(s)	868, 874
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.