Rh5CG544200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000860
Physical Location & Seq
Reverse (-)
75939939 .. 75943462
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG544200.1

Sequence Viewer

Length: 228 bp
ATGAGGTGGGTAGACTTGATCTGCACCTGCAAGCAACATCAGAAGTTCTATGCTGGTAAGTGTAACAGCACAGACGAACATGGAGGAAGAAGAACCCATATTCCTTTAGGGGCACAACCCAAGATAGATGGTGAATTTATTTGGGCTGCTGCAGTTTGCATACAAGCATCCAAGGTCAGCAACAAATTCAAGTCAAGAATTAAGGGAGTCAGGGACTATGTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.5

Weight (kDa)

9.59

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 134, 185
AgsI TTSAA 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 85, 117
ApeKI GCWGC 2 cut(s) 146, 149
ApoI RAATTY 2 cut(s) 134, 185
AsuHPI GGTGA 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 133, 136
BccI CCATC 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 147, 150
BlsI GCNGC 2 cut(s) 148, 151
BmsI GCATC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 2 cut(s) 133, 136
BsgI GTGCAG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 32
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 133, 136
BtsCI GGATG 1 cut(s) 167
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 32
CviAII CATG 1 cut(s) 80
CviJI RGCY 1 cut(s) 146
CviKI_1 RGCY 1 cut(s) 146
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 83
FaiI YATR 6 cut(s) 51, 81, 99, 161, 219, 226
FatI CATG 1 cut(s) 79
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 147, 150
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 147, 150
GluI GCNGC 2 cut(s) 147, 150
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 207
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 24, 30, 152, 159
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 1 cut(s) 18
LpnPI CCDG 3 cut(s) 39, 40, 196
Lsp1109I GCAGC 2 cut(s) 133, 136
LweI GCATC 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 62, 220
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 99, 102
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 134, 185, 198
MlyI GAGTC 1 cut(s) 216
MnlI CCTC 1 cut(s) 77
MseI TTAA 1 cut(s) 201
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 83
PaqCI CACCTGC 1 cut(s) 35
PkrI GCNGC 2 cut(s) 148, 151
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 2 cut(s) 147, 150
Sau3AI GATC 1 cut(s) 18
SchI GAGTC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 115
SetI ASST 3 cut(s) 8, 29, 177
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 150
Sse9I AATT 3 cut(s) 134, 185, 198
StyI CCWWGG 1 cut(s) 171
TasI AATT 3 cut(s) 134, 185, 198
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 2 cut(s) 146, 149
XapI RAATTY 2 cut(s) 134, 185
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.