Rmu_ssc0000116.1_g000037

Carboxylesterase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000116.1
OG0000860
Physical Location & Seq
Forward (+)
184167 .. 184493
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000116.1_g000037.1.cds

Sequence Viewer

Length: 327 bp
atgcaggactacgtgtggctgctgagggcgatgaccttcgtccactcgttgaagatcggagggctgatattgatccaacagttgttcggtgggtcgcgaaggactagctcggagttgaggctagtgaacgaccctattttggggataagtgtatgtgatctcatgtgggacttgtcgctgcctttgggggttgaccgtgatcacgagtatcgcaatccgatggcgggtggcgattctaatgtatttgataaagtgaaagcacttgggtggagagttttggtgagtggctccgatggagacccactgatcgacgtcagattgagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

5.51

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccII CGCG 1 cut(s) 97
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 139, 140, 224
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 2 cut(s) 108, 324
AluI AGCT 2 cut(s) 108, 324
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 19, 178
AsuHPI GGTGA 1 cut(s) 292
BauI CACGAG 1 cut(s) 203
BbvCI CCTCAGC 1 cut(s) 23
BbvI GCAGC 2 cut(s) 6, 165
BccI CCATC 2 cut(s) 214, 287
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 2 cut(s) 105, 122
BisI GCNGC 2 cut(s) 20, 179
BlsI GCNGC 2 cut(s) 21, 180
BmiI GGNNCC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 140, 224
Bse8I GATNNNNATC 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 139, 140, 224
BseMII CTCAG 1 cut(s) 14
BseXI GCAGC 2 cut(s) 6, 165
Bsh1236I CGCG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 139, 140, 224
BsmAI GTCTC 1 cut(s) 291
BsmFI GGGAC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 291
Bsp143I GATC 5 cut(s) 54, 72, 157, 199, 306
Bsp68I TCGCGA 1 cut(s) 97
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 15
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 67
BspTNI GGTCTC 1 cut(s) 291
BssMI GATC 5 cut(s) 54, 72, 157, 199, 306
BssNI GRCGYC 1 cut(s) 312
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 81, 197
BstACI GRCGYC 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 5 cut(s) 57, 75, 160, 202, 309
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 5 cut(s) 54, 72, 157, 199, 306
BstPAI GACNNNNGTC 1 cut(s) 38
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 6, 165
BtgZI GCGATG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 302
BtuMI TCGCGA 1 cut(s) 97
CviAII CATG 1 cut(s) 163
CviJI RGCY 6 cut(s) 19, 64, 108, 121, 288, 324
CviKI_1 RGCY 6 cut(s) 19, 64, 108, 121, 288, 324
DdeI CTNAG 1 cut(s) 23
DpnI GATC 5 cut(s) 56, 74, 159, 201, 308
DpnII GATC 5 cut(s) 54, 72, 157, 199, 306
Eco31I GGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 154, 164
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 217
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 20, 179
Fsp4HI GCNGC 2 cut(s) 20, 179
FspBI CTAG 2 cut(s) 105, 122
GluI GCNGC 2 cut(s) 20, 179
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 166
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 3 cut(s) 43, 127, 193
Hpy188I TCNGA 5 cut(s) 59, 112, 219, 292, 317
Hpy188III TCNNGA 2 cut(s) 96, 203
Hpy8I GTNNAC 3 cut(s) 43, 127, 193
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 2 cut(s) 46, 93
HpyCH4III ACNGT 2 cut(s) 81, 197
HpyCH4IV ACGT 2 cut(s) 12, 312
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 12, 312
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 5 cut(s) 54, 72, 157, 199, 306
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 2 cut(s) 6, 165
MaeI CTAG 2 cut(s) 105, 122
MaeII ACGT 2 cut(s) 12, 312
MalI GATC 5 cut(s) 56, 74, 159, 201, 308
MboI GATC 5 cut(s) 54, 72, 157, 199, 306
MboII GAAGA 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 18, 53, 111
MslI CAYNNNNRTG 1 cut(s) 265
MvnI CGCG 1 cut(s) 97
NdeII GATC 5 cut(s) 54, 72, 157, 199, 306
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 289
NruI TCGCGA 1 cut(s) 97
OliI CACNNNNGTG 1 cut(s) 265
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 21, 180
Ppu21I YACGTR 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 289
RruI TCGCGA 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 265
SatI GCNGC 2 cut(s) 20, 179
Sau3AI GATC 5 cut(s) 54, 72, 157, 199, 306
SetI ASST 5 cut(s) 15, 38, 110, 315, 326
SmiMI CAYNNNNRTG 1 cut(s) 265
SsiI CCGC 1 cut(s) 224
SspMI CTAG 2 cut(s) 105, 122
TaaI ACNGT 2 cut(s) 81, 197
TaiI ACGT 2 cut(s) 15, 315
TaqI TCGA 1 cut(s) 309
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 309
TseI GCWGC 2 cut(s) 19, 178
TspRI CASTG 1 cut(s) 309
XspI CTAG 2 cut(s) 105, 122
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.