Rh5BG520200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000860
Physical Location & Seq
Reverse (-)
82233100 .. 82236649
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG520200.1

Sequence Viewer

Length: 285 bp
ATGAGCTTCTCTTCTCTTCTTCTCAAAATCTATGAGGTAGACTTGATCTGCACCTGCAAGCAACATCAGAAGTTCTATGCTGGTAAGTGTAACAGCACAGACGAACATGGAGGAAGAAGAACCCATATTCCTTTAGGGGCACAACCCAAGATAGATGGTGAATTTATTTGGGCTGCTGCAGTTTGCATACAAGCATCCAAGGTCAGCAACAAATTCAAGTCAAGAATTAAGAAGTACTTAAATTTGGTTTCCAGATTCCATTACAGGGAGTCAGGGACTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.73

Weight (kDa)

9.58

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 39
AcsI RAATTY 3 cut(s) 161, 212, 241
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 173, 176
ApoI RAATTY 3 cut(s) 161, 212, 241
AsuHPI GGTGA 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 160, 163
BccI CCATC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 62
BisI GCNGC 2 cut(s) 174, 177
BlsI GCNGC 2 cut(s) 175, 178
BmcAI AGTACT 1 cut(s) 236
BmsI GCATC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 2 cut(s) 160, 163
BsgI GTGCAG 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 198
Bst6I CTCTTC 2 cut(s) 16, 21
BstC8I GCNNGC 1 cut(s) 59
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 160, 163
BtsCI GGATG 1 cut(s) 194
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 235
CviAII CATG 1 cut(s) 107
CviJI RGCY 2 cut(s) 6, 173
CviKI_1 RGCY 2 cut(s) 6, 173
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 16, 21
EarI CTCTTC 2 cut(s) 16, 21
Eco130I CCWWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 1 cut(s) 110
FaiI YATR 6 cut(s) 33, 78, 108, 126, 188, 281
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 174, 177
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 174, 177
GluI GCNGC 2 cut(s) 174, 177
Hin1II CATG 1 cut(s) 110
HinfI GANTC 2 cut(s) 255, 269
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 222, 252
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4V TGCA 4 cut(s) 51, 57, 179, 186
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 66, 67, 250, 258, 265
Lsp1109I GCAGC 2 cut(s) 160, 163
LweI GCATC 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 5 cut(s) 3, 8, 11, 126, 129
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 4 cut(s) 161, 212, 225, 241
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 2 cut(s) 28, 104
MseI TTAA 2 cut(s) 228, 239
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 2 cut(s) 175, 178
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 228, 239
SatI GCNGC 2 cut(s) 174, 177
Sau3AI GATC 1 cut(s) 45
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 8, 39, 56, 204
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 4 cut(s) 161, 212, 225, 241
StyI CCWWGG 1 cut(s) 198
TasI AATT 4 cut(s) 161, 212, 225, 241
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 2 cut(s) 228, 239
Tru9I TTAA 2 cut(s) 228, 239
TseI GCWGC 2 cut(s) 173, 176
XapI RAATTY 3 cut(s) 161, 212, 241
XmiI GTMKAC 1 cut(s) 39
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.