Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000208.1

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Reverse (-)

38541 .. 39404

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000208.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgagtaaaaaccgtaaaaatcataccgcttggagtgagtcgtctcaactcgcgacattcataactcatccatctctgacaacaattggggcaaacctcactaagaaaagatggtcagcaagctcaagcgactcaagggaacattcttcttttcacactgccagtgttgatcagcgtacacacctacgccctagttcgtcttttgataaccaaatggaagagacattggaagattcctcttttgctatggtagtaggggtcaccaccgtggaagaacagactactcaaatagcccaattggctgaagcagttgagaagctacagaaaactattgaagagaaggatatggaaattgctgcgctcatggagaagttagaaactcaacgtggcgatgactcagaaaaaggtccgcatggtcataagaaagactcatctggtggatcactttctaaacaaaaagaagaatcaaattccatcctagcttcatggtcaattcaacaacttcaagacatgattgccaacacaattagagctcaatatggtggtccctctcaggataagctaacgtactccaaaccttatacgaagcggctcgacaatttgaggatgccaactgggtaccaacctcccaagtttcaacaattcgatggaaaaggtaaccccaagcaacatattgcacatttcattgagacatgcaatagcgctggcacagatggcgactatcttatgaaacaattcgtttgctcactccgagggacaacattcgaatggtttacagaattggagtcagaaactgaaaagggcagctcaagcaaaataaggaccaaaaaaaaaaaaatcatcatccataaatccttgaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

287

Amino Acids

32.24

Weight (kDa)

7.78

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	1 cut(s)	618
AccII	CGCG	1 cut(s)	53
AciI	CCGC	3 cut(s)	27, 410, 589
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	178, 569, 620
AfeI	AGCGCT	1 cut(s)	703
AgsI	TTSAA	5 cut(s)	335, 497, 506, 638, 859
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	6 cut(s)	123, 319, 482, 533, 562, 807
AluI	AGCT	6 cut(s)	123, 319, 482, 533, 562, 807
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	3 cut(s)	48, 215, 683
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	794
Aor51HI	AGCGCT	1 cut(s)	703
ApeKI	GCWGC	2 cut(s)	356, 804
ApoI	RAATTY	1 cut(s)	469
Asp700I	GAANNNNTTC	1 cut(s)	734
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	361, 704
AspS9I	GGNCC	3 cut(s)	407, 545, 822
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	765
AvaII	GGWCC	3 cut(s)	407, 545, 822
BanI	GGYRCC	1 cut(s)	618
BanII	GRGCYC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	343, 816
BccI	CCATC	5 cut(s)	79, 105, 482, 641, 707
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	3 cut(s)	48, 215, 683
BfaI	CTAG	3 cut(s)	192, 479, 862
BfmI	CTRYAG	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	705
BglI	GCCNNNNNGGC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	357, 590, 805
BlsI	GCNGC	3 cut(s)	358, 591, 806
Bme18I	GGWCC	3 cut(s)	407, 545, 822
BmgT120I	GGNCC	3 cut(s)	407, 545, 822
BmiI	GGNNCC	2 cut(s)	547, 620
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	624
Bpu14I	TTCGAA	1 cut(s)	765
BpuEI	CTTGAG	3 cut(s)	109, 118, 793
BsaJI	CCNNGG	2 cut(s)	267, 751
Bse1I	ACTGG	2 cut(s)	162, 619
BseDI	CCNNGG	2 cut(s)	267, 751
BseGI	GGATG	4 cut(s)	67, 474, 612, 843
BseMII	CTCAG	2 cut(s)	411, 566
BseNI	ACTGG	2 cut(s)	162, 619
BseXI	GCAGC	2 cut(s)	343, 816
Bsh1236I	CGCG	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	618
BsiHKAI	GWGCWC	1 cut(s)	535
BslFI	GGGAC	2 cut(s)	531, 769
BsmAI	GTCTC	3 cut(s)	48, 215, 683
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	531, 769
Bsp119I	TTCGAA	1 cut(s)	765
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	169, 440
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	3 cut(s)	27, 410, 589
BspCNI	CTCAG	2 cut(s)	410, 565
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	547, 620
BspPI	GGATC	1 cut(s)	448
BspT104I	TTCGAA	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	162, 619
BssECI	CCNNGG	2 cut(s)	267, 751
BssMI	GATC	2 cut(s)	169, 440
Bst4CI	ACNGT	2 cut(s)	14, 268
Bst6I	CTCTTC	2 cut(s)	213, 330
BstBI	TTCGAA	1 cut(s)	765
BstC8I	GCNNGC	2 cut(s)	121, 706
BstDEI	CTNAG	3 cut(s)	102, 397, 552
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	2 cut(s)	259, 656
BstF5I	GGATG	4 cut(s)	67, 474, 612, 843
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	2 cut(s)	361, 704
BstKTI	GATC	2 cut(s)	172, 443
BstMAI	GTCTC	3 cut(s)	48, 215, 683
BstMBI	GATC	2 cut(s)	169, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 714, 810
BstNSI	RCATGY	1 cut(s)	696
BstPI	GGTNACC	2 cut(s)	259, 656
BstSFI	CTRYAG	1 cut(s)	320
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	343, 816
BtgI	CCRYGG	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	67, 474, 612, 843
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	2 cut(s)	156, 169
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	121, 706
CaiI	CAGNNNCTG	1 cut(s)	794
CfoI	GCGC	2 cut(s)	361, 704
Cfr13I	GGNCC	3 cut(s)	407, 545, 822
Csp6I	GTAC	3 cut(s)	177, 568, 619
CviAII	CATG	5 cut(s)	364, 413, 486, 511, 693
CviJI	RGCY	9 cut(s)	123, 293, 302, 319, 482, 533, 562, 592, 807
CviKI_1	RGCY	9 cut(s)	123, 293, 302, 319, 482, 533, 562, 592, 807
CviQI	GTAC	3 cut(s)	177, 568, 619
DdeI	CTNAG	3 cut(s)	102, 397, 552
DpnI	GATC	2 cut(s)	171, 442
DpnII	GATC	2 cut(s)	169, 440
Eam1104I	CTCTTC	2 cut(s)	213, 330
EarI	CTCTTC	2 cut(s)	213, 330
Ecl136II	GAGCTC	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	3 cut(s)	407, 545, 822
Eco47III	AGCGCT	1 cut(s)	703
Eco53kI	GAGCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	2 cut(s)	259, 656
EcoICRI	GAGCTC	1 cut(s)	533
EcoO65I	GGTNACC	2 cut(s)	259, 656
EcoT38I	GRGCYC	1 cut(s)	535
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	5 cut(s)	367, 416, 489, 514, 696
FaqI	GGGAC	2 cut(s)	531, 769
FatI	CATG	5 cut(s)	363, 412, 485, 510, 692
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	357, 590, 805
FokI	GGATG	4 cut(s)	54, 461, 619, 830
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	3 cut(s)	357, 590, 805
FspBI	CTAG	3 cut(s)	192, 479, 862
GlaI	GCGC	2 cut(s)	360, 703
GluI	GCNGC	3 cut(s)	357, 590, 805
HaeII	RGCGCY	1 cut(s)	705
HhaI	GCGC	2 cut(s)	361, 704
Hin1II	CATG	5 cut(s)	367, 416, 489, 514, 696
Hin6I	GCGC	2 cut(s)	359, 702
HinP1I	GCGC	2 cut(s)	359, 702
HinfI	GANTC	7 cut(s)	38, 131, 233, 395, 428, 464, 785
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	179, 774
Hpy188I	TCNGA	4 cut(s)	78, 400, 752, 790
Hpy188III	TCNNGA	3 cut(s)	52, 506, 554
Hpy8I	GTNNAC	2 cut(s)	179, 774
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	14, 268
HpyCH4IV	ACGT	2 cut(s)	385, 566
HpyCH4V	TGCA	2 cut(s)	677, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 714, 810
HpyF3I	CTNAG	3 cut(s)	102, 397, 552
HpySE526I	ACGT	2 cut(s)	385, 566
Hsp92II	CATG	5 cut(s)	367, 416, 489, 514, 696
HspAI	GCGC	2 cut(s)	359, 702
KpnI	GGTACC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	169, 440
LpnPI	CCDG	5 cut(s)	175, 420, 539, 600, 690
Lsp1109I	GCAGC	2 cut(s)	343, 816
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	3 cut(s)	192, 479, 862
MaeII	ACGT	2 cut(s)	385, 566
MaeIII	GTNAC	2 cut(s)	259, 656
MalI	GATC	2 cut(s)	171, 442
MboI	GATC	2 cut(s)	169, 440
MboII	GAAGA	6 cut(s)	138, 230, 242, 284, 347, 473
MfeI	CAATTG	2 cut(s)	84, 296
MhlI	GDGCHC	1 cut(s)	535
MlyI	GAGTC	5 cut(s)	47, 125, 389, 422, 794
MnlI	CCTC	6 cut(s)	107, 247, 559, 597, 636, 746
MroXI	GAANNNNTTC	1 cut(s)	734
MslI	CAYNNNNRTG	2 cut(s)	266, 766
MunI	CAATTG	2 cut(s)	84, 296
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	299, 714, 810
NdeII	GATC	2 cut(s)	169, 440
NlaIII	CATG	5 cut(s)	367, 416, 489, 514, 696
NlaIV	GGNNCC	2 cut(s)	547, 620
NmuCI	GTSAC	1 cut(s)	259
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	1 cut(s)	696
NspV	TTCGAA	1 cut(s)	765
OliI	CACNNNNGTG	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	233, 464
PkrI	GCNGC	3 cut(s)	358, 591, 806
PleI	GAGTC	5 cut(s)	46, 125, 389, 422, 793
PpsI	GAGTC	5 cut(s)	46, 125, 389, 422, 793
Psp124BI	GAGCTC	1 cut(s)	535
PspEI	GGTNACC	2 cut(s)	259, 656
PspN4I	GGNNCC	2 cut(s)	547, 620
PspPI	GGNCC	3 cut(s)	407, 545, 822
PstNI	CAGNNNCTG	1 cut(s)	794
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	3 cut(s)	178, 569, 620
RsaNI	GTAC	3 cut(s)	177, 568, 619
RseI	CAYNNNNRTG	2 cut(s)	266, 766
SacI	GAGCTC	1 cut(s)	535
SatI	GCNGC	3 cut(s)	357, 590, 805
Sau3AI	GATC	2 cut(s)	169, 440
Sau96I	GGNCC	3 cut(s)	407, 545, 822
SchI	GAGTC	5 cut(s)	47, 125, 389, 422, 794
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	1 cut(s)	597
SfcI	CTRYAG	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	765
SinI	GGWCC	3 cut(s)	407, 545, 822
SmiMI	CAYNNNNRTG	2 cut(s)	266, 766
SmlI	CTYRAG	3 cut(s)	124, 133, 808
SmoI	CTYRAG	3 cut(s)	124, 133, 808
SsiI	CCGC	3 cut(s)	27, 410, 589
SspMI	CTAG	3 cut(s)	192, 479, 862
SstI	GAGCTC	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	14, 268
TaiI	ACGT	2 cut(s)	388, 569
TaqI	TCGA	3 cut(s)	594, 645, 765
TauI	GCSGC	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	233, 464
TscAI	CASTG	2 cut(s)	163, 169
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	356, 804
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	49, 474, 673, 743
TspRI	CASTG	2 cut(s)	163, 169
VpaK11BI	GGWCC	3 cut(s)	407, 545, 822
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	696
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	3 cut(s)	192, 479, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.