Rh6DG121400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
16838105 .. 16869858
31754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG121400.1

Sequence Viewer

Length: 447 bp
ATGGGGGCAAACCTCACTAAGAAAAGATGGTCAGCAAGCTCAAGCGACTCAAGGGAACATTCTTCTTTGCAGACTGCCAATGTTGATCAGCGTACACACCTACGCCCCAGTTTGTCTCTTGATAACCAAACGGAAGAGATTTTGGAAGATGCCTCTTTCGCTATGCAAGTCATGGTAGACTTGATCTGCGCCTGCAAGCAACATCAGAAGTTCTATGCTGGTAAGTGTCACAGCACAGATGGACATGGAGGAAGAAGAACCCATATTCCTTTAGGGGCACAATCCAAGATAGATGGTGAGTTTATTTGGGCTGCTGCTGTTCGCATTCAAGTACCACAATCAGTCTCACTGTTTTTAAGGGTAGTCCTTCTCTTGCTCCAAACCACCAGCCTTGACTTAGTCCACCAGTACAGCCTGAGTCACACGAACCATACCAGTACAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.41

Weight (kDa)

7.84

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AfaI GTAC 4 cut(s) 94, 333, 410, 439
AgsI TTSAA 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 120, 349
ApeKI GCWGC 2 cut(s) 311, 314
AspLEI GCGC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 280
BbvI GCAGC 2 cut(s) 298, 301
BccI CCATC 3 cut(s) 21, 233, 287
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 120, 349
BisI GCNGC 2 cut(s) 312, 315
BlsI GCNGC 2 cut(s) 313, 316
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 25, 34
Bse1I ACTGG 3 cut(s) 108, 406, 435
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 3 cut(s) 108, 406, 435
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 2 cut(s) 298, 301
BsmAI GTCTC 2 cut(s) 120, 349
BsmI GAATGC 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 85, 183
BspCNI CTCAG 1 cut(s) 408
BsrI ACTGG 3 cut(s) 108, 406, 435
BssMI GATC 2 cut(s) 85, 183
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 37, 193, 197
BstDEI CTNAG 3 cut(s) 18, 397, 416
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 2 cut(s) 88, 186
BstMAI GTCTC 2 cut(s) 120, 349
BstMBI GATC 2 cut(s) 85, 183
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 298, 301
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 37, 193, 197
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 4 cut(s) 93, 332, 409, 438
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 172, 245
CviJI RGCY 5 cut(s) 39, 311, 390, 414, 443
CviKI_1 RGCY 5 cut(s) 39, 311, 390, 414, 443
CviQI GTAC 4 cut(s) 93, 332, 409, 438
DdeI CTNAG 3 cut(s) 18, 397, 416
DpnI GATC 2 cut(s) 87, 185
DpnII GATC 2 cut(s) 85, 183
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
FaeI CATG 2 cut(s) 175, 248
FaiI YATR 6 cut(s) 164, 173, 216, 246, 264, 432
FatI CATG 2 cut(s) 171, 244
FbaI TGATCA 1 cut(s) 85
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 312, 315
Fsp4HI GCNGC 2 cut(s) 312, 315
GlaI GCGC 1 cut(s) 190
GluI GCNGC 2 cut(s) 312, 315
HhaI GCGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 175, 248
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 2 cut(s) 47, 418
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 3 cut(s) 95, 178, 403
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 3 cut(s) 95, 178, 403
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 70, 166, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 18, 397, 416
Hsp92II CATG 2 cut(s) 175, 248
HspAI GCGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 183
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 6 cut(s) 121, 204, 205, 400, 419, 428
Lsp1109I GCAGC 2 cut(s) 298, 301
LweI GCATC 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 227, 419
MalI GATC 2 cut(s) 87, 185
MboI GATC 2 cut(s) 85, 183
MboII GAAGA 5 cut(s) 54, 146, 158, 264, 267
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 2 cut(s) 41, 427
MnlI CCTC 3 cut(s) 23, 163, 242
MseI TTAA 1 cut(s) 356
Mva1269I GAATGC 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 85, 183
NlaIII CATG 2 cut(s) 175, 248
NmuCI GTSAC 2 cut(s) 227, 419
PctI GAATGC 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 2 cut(s) 313, 316
PleI GAGTC 2 cut(s) 41, 426
PpsI GAGTC 2 cut(s) 41, 426
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 4 cut(s) 94, 333, 410, 439
RsaNI GTAC 4 cut(s) 93, 332, 409, 438
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 2 cut(s) 312, 315
Sau3AI GATC 2 cut(s) 85, 183
SchI GAGTC 2 cut(s) 41, 427
SduI GDGCHC 1 cut(s) 280
SetI ASST 3 cut(s) 15, 41, 102
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 2 cut(s) 40, 49
SmoI CTYRAG 2 cut(s) 40, 49
TaaI ACNGT 1 cut(s) 351
TatI WGTACW 2 cut(s) 408, 437
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 227, 419
TseI GCWGC 2 cut(s) 311, 314
Tsp45I GTSAC 2 cut(s) 227, 419
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.