Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Reverse (-)

4401092 .. 4401412

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026626

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGGATCCAGTGCGGGGGCTAGCATAGCCTACAATGCAGGACTACGTGTGGCTGCTGAGGGCGATGACCTTTTCCACTCGTTGAATATGAGAGGGCTGATATTGATCCAACCGTTCTTCGGTGGGACCCGAAGGACTAGCTCGGAGTTGAGGCTAGTGAACGACCCTATTTTGGGGATAAGTGTATGTAATCTCATGTGGGACTTGTCGCGGCCTTTCCGGGTTGACCGTGATCACGAGTATTGCAATCTGATGGCGGGTGGCGATTCTAATGTATTTGATCAAGTGAAAGCACTTGGGTGGAGAGTTTTGGTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

6.71

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	1 - 89	1.1e-08	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	3 cut(s)	14, 211, 257
AclWI	GGATC	2 cut(s)	13, 100
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	4 cut(s)	15, 119, 172, 173
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AlwI	GGATC	2 cut(s)	13, 100
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	5
BauI	CACGAG	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	247
BclI	TGATCA	2 cut(s)	232, 280
BcnI	CCSGG	1 cut(s)	221
BfaI	CTAG	3 cut(s)	21, 138, 155
BisI	GCNGC	2 cut(s)	54, 212
BlsI	GCNGC	2 cut(s)	55, 213
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	3 cut(s)	7, 127, 128
BmrFI	CCNGG	1 cut(s)	221
BmtI	GCTAGC	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 119, 172, 173
Bse1I	ACTGG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	4 cut(s)	15, 119, 172, 173
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	2 cut(s)	139, 215
BslI	CCNNNNNNNGG	4 cut(s)	15, 119, 172, 173
BsmFI	GGGAC	2 cut(s)	139, 215
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	4 cut(s)	5, 105, 232, 280
BspACI	CCGC	3 cut(s)	14, 211, 257
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	7, 127, 128
BspOI	GCTAGC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	13, 100
BsrI	ACTGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	5, 105, 232, 280
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	3 cut(s)	114, 230, 318
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	8, 108, 235, 283
BstMBI	GATC	4 cut(s)	5, 105, 232, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 35
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	7 cut(s)	20, 29, 53, 97, 141, 154, 214
CviKI_1	RGCY	7 cut(s)	20, 29, 53, 97, 141, 154, 214
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	4 cut(s)	7, 107, 234, 282
DpnII	GATC	4 cut(s)	5, 105, 232, 280
Eco47I	GGWCC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	126
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	26, 89, 187, 197
FaqI	GGGAC	2 cut(s)	139, 215
FatI	CATG	1 cut(s)	195
FauI	CCCGC	2 cut(s)	7, 250
FbaI	TGATCA	2 cut(s)	232, 280
Fnu4HI	GCNGC	2 cut(s)	54, 212
Fsp4HI	GCNGC	2 cut(s)	54, 212
FspBI	CTAG	3 cut(s)	21, 138, 155
GluI	GCNGC	2 cut(s)	54, 212
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	160, 226
Hpy188I	TCNGA	2 cut(s)	145, 252
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	160, 226
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	3 cut(s)	114, 230, 318
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	38, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 35
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	1 cut(s)	199
KflI	GGGWCCC	1 cut(s)	126
Ksp22I	TGATCA	2 cut(s)	232, 280
Kzo9I	GATC	4 cut(s)	5, 105, 232, 280
LpnPI	CCDG	3 cut(s)	22, 24, 233
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	3 cut(s)	21, 138, 155
MaeII	ACGT	1 cut(s)	46
MalI	GATC	4 cut(s)	7, 107, 234, 282
MboI	GATC	4 cut(s)	5, 105, 232, 280
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	52, 86, 144
MslI	CAYNNNNRTG	1 cut(s)	298
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	26, 35
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	5, 105, 232, 280
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	7, 127, 128
OliI	CACNNNNGTG	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	55, 213
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	7, 127, 128
PspPI	GGNCC	1 cut(s)	126
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	298
SatI	GCNGC	2 cut(s)	54, 212
Sau3AI	GATC	4 cut(s)	5, 105, 232, 280
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	3 cut(s)	49, 72, 143
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	298
SsiI	CCGC	3 cut(s)	14, 211, 257
SspMI	CTAG	3 cut(s)	21, 138, 155
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	114, 230, 318
TaiI	ACGT	1 cut(s)	49
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	1 cut(s)	53
TspRI	CASTG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	126
XspI	CTAG	3 cut(s)	21, 138, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.