Rh6BG136800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
21783399 .. 21790087
6689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG136800.1

Sequence Viewer

Length: 333 bp
ATGGGGGCAAACCTCACTAAGAAAAGATGGTCAGCAAGCTCAAGCGACTCAAGGGAACATTCTTCTTTGCAGACTGCCAATGTTGATCAGCGTACACACCTACGCCCCAGTTTGTCTCTTGATAACCAAACGGAAGAGATTTTGGAAGATGCCTCTTTCGCTATGCAAGTCATGGTAGACTTGATCTGCGCCTGCAAGCAACATCAGAAGTTCTATGCTGGTAAGTGTCACAGCACAGATGGACATGGAGGAAGAAGAACCCATATTCCTTTAGGGGCACAATCCAAGATAGATGGCATCCAAGGTCAGCAACAAATTCAAGTCAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.19

Weight (kDa)

8.54

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 1 cut(s) 320
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 280
BccI CCATC 3 cut(s) 21, 233, 287
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 102
BmsI GCATC 2 cut(s) 139, 306
BmuI ACTGGG 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 25, 34
BsaJI CCNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 85, 183
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 2 cut(s) 85, 183
BssT1I CCWWGG 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 37, 193, 197
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 2 cut(s) 88, 186
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 85, 183
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 37, 193, 197
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 93
CviAII CATG 2 cut(s) 172, 245
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 87, 185
DpnII GATC 2 cut(s) 85, 183
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 2 cut(s) 175, 248
FaiI YATR 5 cut(s) 164, 173, 216, 246, 264
FatI CATG 2 cut(s) 171, 244
FbaI TGATCA 1 cut(s) 85
FblI GTMKAC 1 cut(s) 177
FokI GGATG 1 cut(s) 284
GlaI GCGC 1 cut(s) 190
HhaI GCGC 1 cut(s) 191
Hin1II CATG 2 cut(s) 175, 248
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 95, 178
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 119, 325
Hpy8I GTNNAC 2 cut(s) 95, 178
HpyCH4V TGCA 3 cut(s) 70, 166, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 175, 248
HspAI GCGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 183
LpnPI CCDG 3 cut(s) 121, 204, 205
LweI GCATC 2 cut(s) 139, 306
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 87, 185
MboI GATC 2 cut(s) 85, 183
MboII GAAGA 5 cut(s) 54, 146, 158, 264, 267
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 2 cut(s) 315, 328
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 23, 163, 242
MseI TTAA 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 85, 183
NlaIII CATG 2 cut(s) 175, 248
NmuCI GTSAC 1 cut(s) 227
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 331
Sau3AI GATC 2 cut(s) 85, 183
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 280
SetI ASST 4 cut(s) 15, 41, 102, 307
SfaNI GCATC 2 cut(s) 139, 306
SmlI CTYRAG 2 cut(s) 40, 49
SmoI CTYRAG 2 cut(s) 40, 49
Sse9I AATT 2 cut(s) 315, 328
StyI CCWWGG 1 cut(s) 301
TasI AATT 2 cut(s) 315, 328
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 146
XapI RAATTY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.