FvH4_3g40370

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000183
Physical Location & Seq
Reverse (-)
34100446 .. 34105489
5044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40370.t1

Sequence Viewer

Length: 2151 bp
ATGAAGCTAGTTGTCATTGGTGGAGAATCTCTCAATGTACTTGAGCACTGGGTTTTGGAATTGTTTGGAGATGTCAAAAAAGGACCCCAAGTAAAACTGGAGTTCAAGACAGAAGGTCCTATTTGGAAAGCTGGAAAACTTTACAGGCTAGAGGCTGTTGACGATGTTCATATACTCCACTTAGCATGGATACTTCCATGTCTTCAAGAACACTATTTGAAGAAACCGGAAGGTTACTTGTGTCATCTGCTTGGGCACGAGGGCAGGGGAAGTTTGTATTCCTATCTCAAAGCTAGAGGGTGGGTAACATCTCTAGATGCTGGTGTGAGCAAGAGTGACTGCTCTTCTGTGGCTTACATCTTTTGCATGGTCATATACCTCACCGACTCTGGATTGGAGAAGATTTTTGAAATAATTGGGTTTGTATATCAATACATTGAGTTATTGCGTCAAATGTCGCCACAAGAATGGATATTTCGGGAACTTCACGATATTGGGAACATGGAATTTATATTTGCAGAGGAGCAGGATCATGATGATTATGCTTCAGGACTTGCAGAAAATTTACTGTGTTATGCAACAGAGCATGTCATTTATGGGGACTATGTGAACGAAAGTTGGGATAAGGAATTGATAGAATATGTTCTTGGTTTCTTCTGGCCAGAAAACATGAGAATCGATGTGATATCGAAGTCCTTGTTTAAGTCAGAAGATTTCCAGTGTGAGCCTTGGTTTGGATCACATTATACTGAGGAAGATATATCTCCATATTTGAGAGATTTATGGAAGAATCCTCAAGAAACTAATGTTTCATTGCATCTGCCAGAAAAGAACGATTTCATTCCTCGTGATTTCTCCATCCGTTCTGATGGTTTGTGCATTGATACTGCAATGACATATCCGAGATGCATACTTGATCAACCATTGATGAAGTTTTGGTACAAGCTCGACAGTACATTTAAACTTCCTCACGTAAATACATACTTCCGCATCAATCTGAAGGGGGCATATGATAATGTAAAGAGTTGTGTTTTGACTAGCTTGTATCTCGACCTTCTCACAGATGAGCTGAATGAGATCCTCTATGAGGCCAGTGTTGCCAGCCTGCAAACTTCTTTTTCTCTGTCTCAGGACAAACTGCAGTTATTGGTGTATGGTTTCCATGATAAGCTTCCAGCTCTGTTGTCAAAAATTCTGGAAACAGTAAAAAGTTTTTTGCCAACTGATGATCGTTTTGAGGTTTTTAAAGAAGACATGGGGCGAGCATATGCGAACACCAATATGGATGCTTGGAGTTACTCAACATACTTAAGAGATCAAGTTCTGTTGCAGAGTTTCTATACCGTAGATGAGCAGTTGCATGTTTTGAATGGATTGTCTGTTTCTGATCTGATTTCCTTCATCCCTGAGATTTTTTCCCAGCTATACATTGAGGGCCTTTTGCATGGCAATTTGTCTGAAGAAGAAGCAATTACTCTTGCAAAATCATTTCAACAAAATTTTGCTGTACCACCACTTCCTACCGAATTGGTGTACAGAAACCATTGTATCTGTCTTCCTCCAAATGCTAACCTCATTATAGATACTACTGTGAAGAACAAGACAAAGGAGCAGCTTGGGTATGTTGTTCTCTGTGGTTGGACTCATACATGCAAAGTTTTTGGCTTCTATTTCAGTGTTCAGTCATCCAAGTACAACCCCGTCCACCTTCAAAGCAGACTGGAAAACTTTATAGTTGGTCTGGAAGAGTTGTTGAAAGGACTGGACGATGATTCCTTTGAGAATTATAAAGGTGGACTAATGGCAAAGTTATTCGAGAAAGATGCATCGCTCACATGTGAAACCTATCGATTGTGGACTCAGATTCTTGGTAAATGGTACACGTTTGAATATTCAAAAATGGCTGCAGAACAACTCATAAGCATTCAGAAGGAGGATGTTACCAACTTTTACAAGACCTATTTGCATCAATCATCTCCCAAGTGTCGAAGACTGACAACTCGTGTTTGGGGTTGCAACACAGACTTGAAAGAAGCTGAAGAGGCGCGACCGGAGTCTGAGCAAGTCATTGAAGACCTTTCAGCCTTTAAGATGTCGTCCAAGTTCTATGATGGTAAAAGATGTCAAAAGGTTACTCCTCTTAATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

717

Amino Acids

82.91

Weight (kDa)

5.07

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_C PF05193 1 - 161 4.1e-16 Peptidase M16 inactive domain
Peptidase_M16_M PF16187 170 - 454 3.8e-82 Middle or third domain of peptidase_M16
PqqF-like_C_4 PF22456 535 - 619 6.3e-17 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1788
AccII CGCG 1 cut(s) 2047
AciI CCGC 1 cut(s) 988
AclWI GGATC 3 cut(s) 537, 745, 1072
AcoI YGGCCR 1 cut(s) 659
AcsI RAATTY 4 cut(s) 506, 562, 1191, 1498
AcuI CTGAAG 4 cut(s) 531, 1019, 1479, 2058
AfaI GTAC 7 cut(s) 39, 941, 955, 1509, 1535, 1694, 1880
AfiI CCNNNNNNNGG 2 cut(s) 734, 1087
AflII CTTAAG 1 cut(s) 1309
AflIII ACRYGT 2 cut(s) 1835, 1881
AhdI GACNNNNNGTC 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 1131
AlwI GGATC 3 cut(s) 537, 745, 1072
AoxI GGCC 3 cut(s) 659, 1089, 1435
ApeKI GCWGC 2 cut(s) 1612, 1904
ApoI RAATTY 4 cut(s) 506, 562, 1191, 1498
Asp700I GAANNNNTTC 2 cut(s) 642, 836
AspLEI GCGC 1 cut(s) 2047
AspS9I GGNCC 3 cut(s) 83, 116, 1435
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 2 cut(s) 83, 116
BaeGI GKGCMC 1 cut(s) 258
BaeI ACNNNNGTAYC 4 cut(s) 1531, 1564, 1575, 1608
BalI TGGCCA 1 cut(s) 661
BarI GAAGNNNNNNTAC 4 cut(s) 923, 955, 1500, 1532
BauI CACGAG 3 cut(s) 257, 846, 2001
BbsI GAAGAC 5 cut(s) 194, 1257, 1547, 1996, 2079
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 1624, 1891
BccI CCATC 3 cut(s) 863, 866, 2105
BcgI CGANNNNNNTGC 2 cut(s) 1805, 1839
BciVI GTATCC 1 cut(s) 183
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 1 cut(s) 1131
BfaI CTAG 5 cut(s) 8, 149, 294, 314, 1038
BfmI CTRYAG 2 cut(s) 1139, 1905
BfrI CTTAAG 1 cut(s) 1309
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 1613, 1905
BlsI GCNGC 2 cut(s) 1614, 1906
Bme18I GGWCC 2 cut(s) 83, 116
BmeRI GACNNNNNGTC 1 cut(s) 114
BmgT120I GGNCC 3 cut(s) 83, 116, 1435
BmiI GGNNCC 1 cut(s) 85
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 8 cut(s) 307, 826, 896, 999, 1276, 1813, 1835, 1975
BmuI ACTGGG 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 2053
BpiI GAAGAC 5 cut(s) 194, 1257, 1547, 1996, 2079
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 62, 780
Bsa29I ATCGAT 2 cut(s) 678, 1849
BsaAI YACGTR 1 cut(s) 973
BsaJI CCNNGG 1 cut(s) 728
BsaWI WCCGGW 2 cut(s) 226, 2050
Bsc4I CCNNNNNNNGG 2 cut(s) 734, 1087
Bse1I ACTGG 6 cut(s) 53, 102, 718, 1092, 1725, 1767
Bse3DI GCAATG 2 cut(s) 812, 897
BseCI ATCGAT 2 cut(s) 678, 1849
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 5 cut(s) 858, 1291, 1401, 1685, 1942
BseLI CCNNNNNNNGG 2 cut(s) 734, 1087
BseMI GCAATG 2 cut(s) 812, 897
BseMII CTCAG 5 cut(s) 741, 1142, 1398, 1874, 2049
BseNI ACTGG 6 cut(s) 53, 102, 718, 1092, 1725, 1767
BseRI GAGGAG 2 cut(s) 536, 2127
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 1624, 1891
BseYI CCCAGC 1 cut(s) 1419
Bsh1236I CGCG 1 cut(s) 2047
Bsh1285I CGRYCG 1 cut(s) 2051
BshFI GGCC 3 cut(s) 661, 1091, 1437
BshVI ATCGAT 2 cut(s) 678, 1849
BsiEI CGRYCG 1 cut(s) 2051
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 227, 2051
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 734, 1087
BsmAI GTCTC 1 cut(s) 1131
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 1923
BsnI GGCC 3 cut(s) 661, 1091, 1437
Bsp1286I GDGCHC 2 cut(s) 48, 258
Bsp1407I TGTACA 1 cut(s) 1533
Bsp143I GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
BspACI CCGC 1 cut(s) 988
BspANI GGCC 3 cut(s) 661, 1091, 1437
BspCNI CTCAG 5 cut(s) 742, 1141, 1399, 1873, 2050
BspDI ATCGAT 2 cut(s) 678, 1849
BspFNI CGCG 1 cut(s) 2047
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 85
BspMAI CTGCAG 2 cut(s) 1143, 1909
BspPI GGATC 3 cut(s) 537, 745, 1072
BspQI GCTCTTC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 1309
BsrDI GCAATG 2 cut(s) 812, 897
BsrGI TGTACA 1 cut(s) 1533
BsrI ACTGG 6 cut(s) 53, 102, 718, 1092, 1725, 1767
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
BssSI CACGAG 3 cut(s) 257, 846, 2001
BssT1I CCWWGG 1 cut(s) 728
Bst2BI CACGAG 3 cut(s) 257, 846, 2001
Bst4CI ACNGT 5 cut(s) 570, 953, 1204, 1345, 1591
Bst6I CTCTTC 3 cut(s) 349, 1740, 2034
BstAFI CTTAAG 1 cut(s) 1309
BstAUI TGTACA 1 cut(s) 1533
BstBAI YACGTR 1 cut(s) 973
BstC8I GCNNGC 3 cut(s) 1102, 1106, 1263
BstDEI CTNAG 6 cut(s) 181, 750, 1128, 1407, 1860, 2058
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 5 cut(s) 858, 1291, 1401, 1685, 1942
BstFNI CGCG 1 cut(s) 2047
BstHHI GCGC 1 cut(s) 2047
BstKTI GATC 7 cut(s) 532, 740, 919, 1080, 1231, 1318, 1390
BstMAI GTCTC 1 cut(s) 1131
BstMBI GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
BstMCI CGRYCG 1 cut(s) 2051
BstMWI GCNNNNNNNGC 2 cut(s) 1097, 2042
BstNSI RCATGY 4 cut(s) 590, 1364, 1653, 1839
BstPAI GACNNNNGTC 1 cut(s) 2053
BstSFI CTRYAG 2 cut(s) 1139, 1905
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 2047
BstV1I GCAGC 2 cut(s) 1624, 1891
BstV2I GAAGAC 5 cut(s) 194, 1257, 1547, 1996, 2079
BstX2I RGATCY 1 cut(s) 1077
BstXI CCANNNNNNTGG 1 cut(s) 468
BstYI RGATCY 1 cut(s) 1077
Bsu15I ATCGAT 2 cut(s) 678, 1849
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 3 cut(s) 661, 1091, 1437
BsuTUI ATCGAT 2 cut(s) 678, 1849
BtgZI GCGATG 1 cut(s) 1812
BtsCI GGATG 5 cut(s) 858, 1291, 1401, 1685, 1942
BtsIMutI CAGTG 4 cut(s) 46, 725, 1099, 1681
Cac8I GCNNGC 3 cut(s) 1102, 1106, 1263
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 2047
Cfr13I GGNCC 3 cut(s) 83, 116, 1435
ClaI ATCGAT 2 cut(s) 678, 1849
CseI GACGC 1 cut(s) 437
Csp6I GTAC 7 cut(s) 38, 940, 954, 1508, 1534, 1693, 1879
CviQI GTAC 7 cut(s) 38, 940, 954, 1508, 1534, 1693, 1879
DdeI CTNAG 6 cut(s) 181, 750, 1128, 1407, 1860, 2058
DpnI GATC 7 cut(s) 531, 739, 918, 1079, 1230, 1317, 1389
DpnII GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
DraI TTTAAA 2 cut(s) 961, 1246
DriI GACNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 659
Eam1104I CTCTTC 3 cut(s) 349, 1740, 2034
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 3 cut(s) 349, 1740, 2034
Eco130I CCWWGG 1 cut(s) 728
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 2 cut(s) 83, 116
Eco57I CTGAAG 4 cut(s) 531, 1019, 1479, 2058
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 3 cut(s) 83, 116, 1435
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 2 cut(s) 911, 1828
ErhI CCWWGG 1 cut(s) 728
FaqI GGGAC 1 cut(s) 614
FauNDI CATATG 2 cut(s) 1009, 1267
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 2 cut(s) 1613, 1905
FokI GGATG 5 cut(s) 845, 1298, 1388, 1672, 1949
Fsp4HI GCNGC 2 cut(s) 1613, 1905
FspBI CTAG 5 cut(s) 8, 149, 294, 314, 1038
GlaI GCGC 1 cut(s) 2046
GluI GCNGC 2 cut(s) 1613, 1905
GsaI CCCAGC 1 cut(s) 1423
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 3 cut(s) 661, 1091, 1437
HapII CCGG 2 cut(s) 227, 2051
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 2047
Hin6I GCGC 1 cut(s) 2045
HinP1I GCGC 1 cut(s) 2045
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 9 cut(s) 26, 386, 675, 790, 1642, 1772, 1858, 1864, 2054
HpaII CCGG 2 cut(s) 227, 2051
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 7 cut(s) 160, 610, 1534, 1705, 1796, 1857, 1881
Hpy8I GTNNAC 7 cut(s) 160, 610, 1534, 1705, 1796, 1857, 1881
HpyAV CCTTC 7 cut(s) 107, 224, 994, 1064, 1408, 1718, 1924
HpyCH4III ACNGT 5 cut(s) 570, 953, 1204, 1345, 1591
HpyCH4IV ACGT 2 cut(s) 972, 1883
HpyF10VI GCNNNNNNNGC 2 cut(s) 1097, 2042
HpyF3I CTNAG 6 cut(s) 181, 750, 1128, 1407, 1860, 2058
HpySE526I ACGT 2 cut(s) 972, 1883
HspAI GCGC 1 cut(s) 2045
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 523, 1609
Lsp1109I GCAGC 2 cut(s) 1624, 1891
LweI GCATC 8 cut(s) 307, 826, 896, 999, 1276, 1813, 1835, 1975
MaeI CTAG 5 cut(s) 8, 149, 294, 314, 1038
MaeII ACGT 2 cut(s) 972, 1883
MaeIII GTNAC 6 cut(s) 233, 304, 335, 1295, 1939, 2131
MalI GATC 7 cut(s) 531, 739, 918, 1079, 1230, 1317, 1389
MboI GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
MflI RGATCY 1 cut(s) 1077
MhlI GDGCHC 2 cut(s) 48, 258
MlsI TGGCCA 1 cut(s) 661
MluNI TGGCCA 1 cut(s) 661
MlyI GAGTC 4 cut(s) 380, 1636, 1852, 2063
MmeI TCCRAC 1 cut(s) 1619
Mox20I TGGCCA 1 cut(s) 661
Mph1103I ATGCAT 2 cut(s) 911, 1828
MroXI GAANNNNTTC 2 cut(s) 642, 836
MscI TGGCCA 1 cut(s) 661
MseI TTAA 7 cut(s) 702, 960, 1245, 1310, 2088, 2142, 2149
MslI CAYNNNNRTG 2 cut(s) 466, 1280
Msp20I TGGCCA 1 cut(s) 661
MspCI CTTAAG 1 cut(s) 1309
MspI CCGG 2 cut(s) 227, 2051
Mva1269I GAATGC 1 cut(s) 1923
MvnI CGCG 1 cut(s) 2047
MwoI GCNNNNNNNGC 2 cut(s) 1097, 2042
NdeI CATATG 2 cut(s) 1009, 1267
NdeII GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 335
NsiI ATGCAT 2 cut(s) 911, 1828
NspI RCATGY 4 cut(s) 590, 1364, 1653, 1839
PagI TCATGA 1 cut(s) 532
PciI ACATGT 1 cut(s) 1835
PciSI GCTCTTC 1 cut(s) 349
PctI GAATGC 1 cut(s) 1923
PdmI GAANNNNTTC 2 cut(s) 642, 836
PfeI GAWTC 5 cut(s) 26, 675, 790, 1772, 1864
PkrI GCNGC 2 cut(s) 1614, 1906
PleI GAGTC 4 cut(s) 380, 1636, 1852, 2062
PpsI GAGTC 4 cut(s) 380, 1636, 1852, 2062
Ppu21I YACGTR 1 cut(s) 973
PpuMI RGGWCCY 2 cut(s) 83, 116
PscI ACATGT 1 cut(s) 1835
PshAI GACNNNNGTC 1 cut(s) 2053
PsiI TTATAA 1 cut(s) 1788
Psp5II RGGWCCY 2 cut(s) 83, 116
PspFI CCCAGC 1 cut(s) 1419
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 3 cut(s) 83, 116, 1435
PspPPI RGGWCCY 2 cut(s) 83, 116
PstI CTGCAG 2 cut(s) 1143, 1909
PsuI RGATCY 1 cut(s) 1077
RsaI GTAC 7 cut(s) 39, 941, 955, 1509, 1535, 1694, 1880
RsaNI GTAC 7 cut(s) 38, 940, 954, 1508, 1534, 1693, 1879
RseI CAYNNNNRTG 2 cut(s) 466, 1280
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 7 cut(s) 702, 960, 1245, 1310, 2088, 2142, 2149
SatI GCNGC 2 cut(s) 1613, 1905
Sau3AI GATC 7 cut(s) 529, 737, 916, 1077, 1228, 1315, 1387
Sau96I GGNCC 3 cut(s) 83, 116, 1435
SchI GAGTC 4 cut(s) 380, 1636, 1852, 2063
SduI GDGCHC 2 cut(s) 48, 258
SfaNI GCATC 8 cut(s) 307, 826, 896, 999, 1276, 1813, 1835, 1975
SfcI CTRYAG 2 cut(s) 1139, 1905
SinI GGWCC 2 cut(s) 83, 116
SmiMI CAYNNNNRTG 2 cut(s) 466, 1280
SmlI CTYRAG 3 cut(s) 41, 795, 1309
SmoI CTYRAG 3 cut(s) 41, 795, 1309
SsiI CCGC 1 cut(s) 988
SspI AATATT 1 cut(s) 1892
SspMI CTAG 5 cut(s) 8, 149, 294, 314, 1038
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 5 cut(s) 570, 953, 1204, 1345, 1591
TaiI ACGT 2 cut(s) 975, 1886
TaqI TCGA 7 cut(s) 678, 689, 948, 1050, 1815, 1849, 1987
TatI WGTACW 4 cut(s) 37, 953, 1533, 1692
TfiI GAWTC 5 cut(s) 26, 675, 790, 1772, 1864
Tru1I TTAA 7 cut(s) 702, 960, 1245, 1310, 2088, 2142, 2149
Tru9I TTAA 7 cut(s) 702, 960, 1245, 1310, 2088, 2142, 2149
TscAI CASTG 4 cut(s) 53, 725, 1099, 1681
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 1612, 1904
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 6 cut(s) 17, 158, 801, 829, 944, 1390
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 4 cut(s) 53, 725, 1099, 1681
Vha464I CTTAAG 1 cut(s) 1309
VpaK11BI GGWCC 2 cut(s) 83, 116
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 4 cut(s) 506, 562, 1191, 1498
XbaI TCTAGA 1 cut(s) 313
XceI RCATGY 4 cut(s) 590, 1364, 1653, 1839
XmnI GAANNNNTTC 2 cut(s) 642, 836
XspI CTAG 5 cut(s) 8, 149, 294, 314, 1038
Zsp2I ATGCAT 2 cut(s) 911, 1828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.