Rroxscaffold_1G00008290

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000183
Physical Location & Seq
Forward (+)
10483745 .. 10487853
4109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008290.1

Sequence Viewer

Length: 1827 bp
ATGTTTATTTTCCTTGGAGTGGCCTCTGTCCCTAAATTTCTGAATGCATGTGACTTCGCTCTTTTGCATGTCTTGGGAAGTTTGTATTTCCATCTCAAAGCTAGAGGTTGGGCAACATTTTTAAGTGCTCCAGTGGAACACTATTCTGTGGCTGATGTCTTCTGCATGATCATATACCTCACTGACTCTGGATTGGAGAAGATTTTCGATATAATTGGGTTGGTGTATCAATACATTAAGTTCTTACGGCAAGTGTTGCCCCAAGAATGGATATTTCGTGAACTCCAGGATATTGGGAACATCTACCTTAGGTTTTTAGAGGAGCAGCCCCAGGATTATTATGCTTTAAGACTTGGAGGAAATTTACTACATTATCCCGCAGAGCATGCTATTTATGGGGACTATTTGCTAGAGAGTTGGGATGAGAAATTGATAGAATATACTCTAGGTTTCTTGAGACCAGAAAACATGAGGATTGATGTGATATCTAAGTCCTCCACGTTGTCAGAAGATTTCCAGTGCGAGCCTTGGTTTGGGTCACATTTTACTGAGGAAGATATATCTCCGTCTTTGATAGATTTATGGAAGGATCCTCAAGAAATTGATAGTTCATTGCATCTCCCAGAAAAGAATGAATTCATTCCCTCTGATTTTTCCATCCGTTCTGATGTTCTTGATACCACAAATACATCTTGTCCTAGATGTATACTTGATGGGCCATTGGTGAAGTTATGGTACAAGCTTGATAGTACTTACAAACTTCCGCAGGCAAACATATACTTTCGCGTCAGTCTAAAGGGAGCATCTGGTAGTGTGAAGAGTTCTGTCTTGACTCAACTATACGGTGACCTTCTTTGGGATGAGCTGAATGAGGTTGTATATCAGGCTAGTGTCGCCCAGCTGGGAACTTCTGTATCTGTGTACACAAACTATCTGGAGCTGAAGGTCAGCGGTTTCAATGATAAGATTCCAACTCTCCTGTCAAAAATTATGACAACAGCCAAAAATTTCTCGCCAACTTACGAATGTTTCAAGGTTATTAAAGAGGACATGGAGCGAGCATATAGGAACACCAATATGGATCCTTGGAGCCACTCGACATACTTGAGAGATGAAGTTTTGTACCAAAATTTCTGTGATGTAGATGAGACGTTGCATGTTTTAAATGGATTGACTGTTTCTGATGTGAAGTCATTCATTCCCGAGCTTTGGTCCCTGCATTACATTGAAGGCCTTTGCCATGGAAATCTGTTAGAAGAAGAAGCAATCAGCCTTTTAAATATAGTGAAGACAAATTTTTCTGTGCAACCACATCCTATCGAACTGAAGCATAAAAATAACTGTATTTGTCTTCCTCCTGATGCTAACATCATTAGAGATGTCAGAGTGAAGAATAAGTCTCAAACAAACTCTGTTATCGAGCTAGGATTGGATGATGAATCCTTTGAGAATTACCAAGGTGGGTTACTAGCGAAGCTATTGGAGAAAGATTCAACCCTTATGGATGAAACTGCTCGATATTGGGATCATATTATCTGCAAAAGGTATAAGTTTGACAAATGGGAAAAGATAGCAGAAGAACTCAGAAGTCTACAGAAGGGGGATGTTATCAACTTTTACAAGACTTACTTGCAACTATCATCTCCCAAGCGTCGGAGACTTGTAACTCGTGTTTGGGGTTGCAACACGGACATGAAAGAAGCTGAAGAAGCGCGAACGGAGTCTGAGCAAGTCATTGAAGACCTTGCAGCCTTTAAGAGGTCATCTCAGTTCTATGGTCATGGAAGTTGTCAGACAGTTGCTCCTCCGATTATGTGTAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

608

Amino Acids

70.16

Weight (kDa)

5.13

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 104 - 386 1.7e-81 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 706, 1591
AccII CGCG 2 cut(s) 786, 1714
AciI CCGC 3 cut(s) 378, 764, 951
AclWI GGATC 5 cut(s) 584, 597, 1076, 1089, 1533
AcsI RAATTY 6 cut(s) 35, 361, 635, 1006, 1129, 1294
AcuI CTGAAG 3 cut(s) 962, 1346, 1725
AfaI GTAC 4 cut(s) 737, 751, 923, 1124
AfiI CCNNNNNNNGG 7 cut(s) 19, 267, 533, 856, 1209, 1653, 1758
AgsI TTSAA 5 cut(s) 958, 1033, 1229, 1494, 1739
AjnI CCWGG 2 cut(s) 285, 330
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 4 cut(s) 451, 1142, 1404, 1651
AlwI GGATC 5 cut(s) 584, 597, 1076, 1089, 1533
Ama87I CYCGRG 1 cut(s) 1202
AoxI GGCC 3 cut(s) 21, 716, 1231
ApeKI GCWGC 2 cut(s) 325, 1748
ApoI RAATTY 6 cut(s) 35, 361, 635, 1006, 1129, 1294
Asp700I GAANNNNTTC 4 cut(s) 203, 635, 639, 1193
AspLEI GCGC 1 cut(s) 1714
AspS9I GGNCC 2 cut(s) 716, 1212
AsuHPI GGTGA 2 cut(s) 736, 857
AvaI CYCGRG 1 cut(s) 1202
AvaII GGWCC 1 cut(s) 1212
AxyI CCTNAGG 1 cut(s) 308
BaeI ACNNNNGTAYC 2 cut(s) 897, 930
BamHI GGATCC 2 cut(s) 589, 1081
BarI GAAGNNNNNNTAC 2 cut(s) 719, 751
BauI CACGAG 1 cut(s) 1668
BbsI GAAGAC 4 cut(s) 151, 1295, 1343, 1746
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 337, 1760
BccI CCATC 3 cut(s) 99, 665, 707
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 287, 332
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 4 cut(s) 451, 1142, 1404, 1651
BfaI CTAG 7 cut(s) 102, 410, 446, 699, 888, 1424, 1469
BfmI CTRYAG 1 cut(s) 1592
BisI GCNGC 2 cut(s) 326, 1749
BlsI GCNGC 2 cut(s) 327, 1750
BmcAI AGTACT 1 cut(s) 751
Bme1390I CCNGG 2 cut(s) 287, 332
Bme18I GGWCC 1 cut(s) 1212
BmeT110I CYCGRG 1 cut(s) 1202
BmgT120I GGNCC 2 cut(s) 716, 1212
BmiI GGNNCC 4 cut(s) 591, 1083, 1091, 1214
BmrFI CCNGG 2 cut(s) 287, 332
BmsI GCATC 3 cut(s) 625, 812, 1351
BpiI GAAGAC 4 cut(s) 151, 1295, 1343, 1746
BplI GAGNNNNNCTC 2 cut(s) 1750, 1782
BpmI CTGGAG 3 cut(s) 114, 269, 956
BpuEI CTTGAG 3 cut(s) 475, 579, 1126
BsaI GGTCTC 1 cut(s) 451
BsaJI CCNNGG 6 cut(s) 13, 330, 527, 1085, 1240, 1456
BsaXI ACNNNNNCTCC 2 cut(s) 1786, 1816
Bsc4I CCNNNNNNNGG 7 cut(s) 19, 267, 533, 856, 1209, 1653, 1758
Bse1I ACTGG 2 cut(s) 131, 517
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 611
BseBI CCWGG 2 cut(s) 287, 332
BseDI CCNNGG 6 cut(s) 13, 330, 527, 1085, 1240, 1456
BseGI GGATG 7 cut(s) 427, 657, 865, 1312, 1438, 1510, 1609
BseLI CCNNNNNNNGG 7 cut(s) 19, 267, 533, 856, 1209, 1653, 1758
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 4 cut(s) 540, 1597, 1716, 1781
BseNI ACTGG 2 cut(s) 131, 517
BseRI GAGGAG 2 cut(s) 335, 1794
BseXI GCAGC 2 cut(s) 337, 1760
BseYI CCCAGC 2 cut(s) 897, 901
Bsh1236I CGCG 2 cut(s) 786, 1714
BshFI GGCC 3 cut(s) 23, 718, 1233
BsiHKAI GWGCWC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 1202
BslFI GGGAC 3 cut(s) 14, 413, 1198
BslI CCNNNNNNNGG 7 cut(s) 19, 267, 533, 856, 1209, 1653, 1758
BsmAI GTCTC 4 cut(s) 451, 1142, 1404, 1651
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 3 cut(s) 14, 413, 1198
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 3 cut(s) 23, 718, 1233
Bso31I GGTCTC 1 cut(s) 451
BsoBI CYCGRG 1 cut(s) 1202
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 4 cut(s) 168, 589, 1081, 1525
Bsp19I CCATGG 1 cut(s) 1240
BspACI CCGC 3 cut(s) 378, 764, 951
BspANI GGCC 3 cut(s) 23, 718, 1233
BspCNI CTCAG 4 cut(s) 541, 1596, 1717, 1780
BspFNI CGCG 2 cut(s) 786, 1714
BspLI GGNNCC 4 cut(s) 591, 1083, 1091, 1214
BspPI GGATC 5 cut(s) 584, 597, 1076, 1089, 1533
BspTNI GGTCTC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 611
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 2 cut(s) 131, 517
BssECI CCNNGG 6 cut(s) 13, 330, 527, 1085, 1240, 1456
BssMI GATC 4 cut(s) 168, 589, 1081, 1525
BssNAI GTATAC 1 cut(s) 707
BssSI CACGAG 1 cut(s) 1668
BssT1I CCWWGG 5 cut(s) 13, 527, 1085, 1240, 1456
Bst1107I GTATAC 1 cut(s) 707
Bst2BI CACGAG 1 cut(s) 1668
Bst2UI CCWGG 2 cut(s) 287, 332
Bst4CI ACNGT 4 cut(s) 845, 1177, 1343, 1798
Bst6I CTCTTC 1 cut(s) 812
BstAPI GCANNNNNTGC 2 cut(s) 256, 386
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 4 cut(s) 387, 524, 768, 1059
BstDEI CTNAG 6 cut(s) 308, 489, 549, 1583, 1725, 1767
BstDSI CCRYGG 1 cut(s) 1240
BstEII GGTNACC 1 cut(s) 845
BstENI CCTNNNNNAGG 1 cut(s) 1756
BstF5I GGATG 7 cut(s) 427, 657, 865, 1312, 1438, 1510, 1609
BstFNI CGCG 2 cut(s) 786, 1714
BstHHI GCGC 1 cut(s) 1714
BstKTI GATC 4 cut(s) 171, 592, 1084, 1528
BstMAI GTCTC 4 cut(s) 451, 1142, 1404, 1651
BstMBI GATC 4 cut(s) 168, 589, 1081, 1525
BstMWI GCNNNNNNNGC 4 cut(s) 256, 386, 893, 1709
BstNI CCWGG 2 cut(s) 287, 332
BstNSI RCATGY 4 cut(s) 51, 71, 389, 1160
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 2 cut(s) 285, 330
BstSFI CTRYAG 1 cut(s) 1592
BstUI CGCG 2 cut(s) 786, 1714
BstV1I GCAGC 2 cut(s) 337, 1760
BstV2I GAAGAC 4 cut(s) 151, 1295, 1343, 1746
BstX2I RGATCY 2 cut(s) 589, 1081
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 2 cut(s) 589, 1081
BstZ17I GTATAC 1 cut(s) 707
Bsu36I CCTNAGG 1 cut(s) 308
BsuRI GGCC 3 cut(s) 23, 718, 1233
BtgI CCRYGG 1 cut(s) 1240
BtsCI GGATG 7 cut(s) 427, 657, 865, 1312, 1438, 1510, 1609
BtsIMutI CAGTG 3 cut(s) 138, 180, 524
Cac8I GCNNGC 4 cut(s) 387, 524, 768, 1059
CfoI GCGC 1 cut(s) 1714
Cfr13I GGNCC 2 cut(s) 716, 1212
CseI GACGC 2 cut(s) 775, 1640
Csp6I GTAC 4 cut(s) 736, 750, 922, 1123
CviQI GTAC 4 cut(s) 736, 750, 922, 1123
DdeI CTNAG 6 cut(s) 308, 489, 549, 1583, 1725, 1767
DpnI GATC 4 cut(s) 170, 591, 1083, 1527
DpnII GATC 4 cut(s) 168, 589, 1081, 1525
DraI TTTAAA 2 cut(s) 1164, 1278
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Eco130I CCWWGG 5 cut(s) 13, 527, 1085, 1240, 1456
Eco147I AGGCCT 1 cut(s) 1233
Eco31I GGTCTC 1 cut(s) 451
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 1212
Eco57I CTGAAG 3 cut(s) 962, 1346, 1725
Eco81I CCTNAGG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 1202
Eco91I GGTNACC 1 cut(s) 845
EcoNI CCTNNNNNAGG 1 cut(s) 1756
EcoO65I GGTNACC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 285, 330
EcoRV GATATC 1 cut(s) 486
EcoT14I CCWWGG 5 cut(s) 13, 527, 1085, 1240, 1456
EcoT22I ATGCAT 1 cut(s) 49
ErhI CCWWGG 5 cut(s) 13, 527, 1085, 1240, 1456
Esp3I CGTCTC 1 cut(s) 1142
FalI AAGNNNNNCTT 2 cut(s) 1613, 1645
FaqI GGGAC 3 cut(s) 14, 413, 1198
FauI CCCGC 1 cut(s) 385
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 2 cut(s) 706, 1591
Fnu4HI GCNGC 2 cut(s) 326, 1749
FokI GGATG 7 cut(s) 434, 644, 872, 1299, 1445, 1517, 1616
Fsp4HI GCNGC 2 cut(s) 326, 1749
FspBI CTAG 7 cut(s) 102, 410, 446, 699, 888, 1424, 1469
GlaI GCGC 1 cut(s) 1713
GluI GCNGC 2 cut(s) 326, 1749
GsaI CCCAGC 2 cut(s) 901, 905
GsuI CTGGAG 3 cut(s) 114, 269, 956
HaeIII GGCC 3 cut(s) 23, 718, 1233
HgaI GACGC 2 cut(s) 775, 1640
HhaI GCGC 1 cut(s) 1714
Hin6I GCGC 1 cut(s) 1712
HinP1I GCGC 1 cut(s) 1712
HindIII AAGCTT 2 cut(s) 740, 1820
HinfI GANTC 6 cut(s) 185, 832, 967, 1439, 1490, 1721
HphI GGTGA 2 cut(s) 736, 857
Hpy166II GTNNAC 5 cut(s) 281, 707, 922, 924, 1592
Hpy188III TCNNGA 9 cut(s) 189, 278, 454, 596, 674, 829, 935, 1202, 1358
Hpy8I GTNNAC 5 cut(s) 281, 707, 922, 924, 1592
Hpy99I CGWCG 1 cut(s) 1656
HpyAV CCTTC 5 cut(s) 580, 860, 937, 1223, 1591
HpyCH4III ACNGT 4 cut(s) 845, 1177, 1343, 1798
HpyCH4IV ACGT 2 cut(s) 500, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 386, 893, 1709
HpyF3I CTNAG 6 cut(s) 308, 489, 549, 1583, 1725, 1767
HpySE526I ACGT 2 cut(s) 500, 1151
HspAI GCGC 1 cut(s) 1712
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 168, 589, 1081, 1525
LmnI GCTCC 7 cut(s) 133, 322, 800, 937, 1054, 1089, 1807
Lsp1109I GCAGC 2 cut(s) 337, 1760
LweI GCATC 3 cut(s) 625, 812, 1351
MaeI CTAG 7 cut(s) 102, 410, 446, 699, 888, 1424, 1469
MaeII ACGT 2 cut(s) 500, 1151
MaeIII GTNAC 5 cut(s) 50, 537, 845, 1464, 1663
MalI GATC 4 cut(s) 170, 591, 1083, 1527
MboI GATC 4 cut(s) 168, 589, 1081, 1525
MflI RGATCY 2 cut(s) 589, 1081
MhlI GDGCHC 1 cut(s) 130
MlyI GAGTC 3 cut(s) 179, 826, 1730
MmeI TCCRAC 2 cut(s) 995, 1634
Mph1103I ATGCAT 1 cut(s) 49
MroXI GAANNNNTTC 4 cut(s) 203, 635, 639, 1193
MseI TTAA 7 cut(s) 122, 237, 347, 1041, 1163, 1277, 1755
MslI CAYNNNNRTG 2 cut(s) 1076, 1691
MspA1I CMGCKG 2 cut(s) 901, 951
MspR9I CCNGG 2 cut(s) 287, 332
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 2 cut(s) 287, 332
MvnI CGCG 2 cut(s) 786, 1714
MwoI GCNNNNNNNGC 4 cut(s) 256, 386, 893, 1709
NcoI CCATGG 1 cut(s) 1240
NdeII GATC 4 cut(s) 168, 589, 1081, 1525
NlaIV GGNNCC 4 cut(s) 591, 1083, 1091, 1214
NmuCI GTSAC 3 cut(s) 50, 537, 845
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 4 cut(s) 51, 71, 389, 1160
PaeI GCATGC 1 cut(s) 389
PceI AGGCCT 1 cut(s) 1233
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 4 cut(s) 203, 635, 639, 1193
PfeI GAWTC 3 cut(s) 967, 1439, 1490
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 327, 1750
PleI GAGTC 3 cut(s) 179, 826, 1729
PpsI GAGTC 3 cut(s) 179, 826, 1729
Psp6I CCWGG 2 cut(s) 285, 330
PspEI GGTNACC 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 897, 901
PspGI CCWGG 2 cut(s) 285, 330
PspN4I GGNNCC 4 cut(s) 591, 1083, 1091, 1214
PspPI GGNCC 2 cut(s) 716, 1212
PsuI RGATCY 2 cut(s) 589, 1081
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 4 cut(s) 737, 751, 923, 1124
RsaNI GTAC 4 cut(s) 736, 750, 922, 1123
RseI CAYNNNNRTG 2 cut(s) 1076, 1691
SaqAI TTAA 7 cut(s) 122, 237, 347, 1041, 1163, 1277, 1755
SatI GCNGC 2 cut(s) 326, 1749
Sau3AI GATC 4 cut(s) 168, 589, 1081, 1525
Sau96I GGNCC 2 cut(s) 716, 1212
ScaI AGTACT 1 cut(s) 751
SchI GAGTC 3 cut(s) 179, 826, 1730
ScrFI CCNGG 2 cut(s) 287, 332
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 3 cut(s) 625, 812, 1351
SfcI CTRYAG 1 cut(s) 1592
SinI GGWCC 1 cut(s) 1212
SmiMI CAYNNNNRTG 2 cut(s) 1076, 1691
SmlI CTYRAG 3 cut(s) 454, 594, 1105
SmoI CTYRAG 3 cut(s) 454, 594, 1105
SphI GCATGC 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 1233
SsiI CCGC 3 cut(s) 378, 764, 951
SspMI CTAG 7 cut(s) 102, 410, 446, 699, 888, 1424, 1469
StuI AGGCCT 1 cut(s) 1233
StyD4I CCNGG 2 cut(s) 285, 330
StyI CCWWGG 5 cut(s) 13, 527, 1085, 1240, 1456
TaaI ACNGT 4 cut(s) 845, 1177, 1343, 1798
TaiI ACGT 2 cut(s) 503, 1154
TaqI TCGA 5 cut(s) 207, 1097, 1320, 1419, 1516
TatI WGTACW 2 cut(s) 749, 921
TfiI GAWTC 3 cut(s) 967, 1439, 1490
Tru1I TTAA 7 cut(s) 122, 237, 347, 1041, 1163, 1277, 1755
Tru9I TTAA 7 cut(s) 122, 237, 347, 1041, 1163, 1277, 1755
TscAI CASTG 3 cut(s) 138, 187, 524
TseFI GTSAC 3 cut(s) 50, 537, 845
TseI GCWGC 2 cut(s) 325, 1748
Tsp45I GTSAC 3 cut(s) 50, 537, 845
TspDTI ATGAA 8 cut(s) 600, 628, 648, 1128, 1186, 1452, 1521, 1709
TspGWI ACGGA 4 cut(s) 555, 650, 1703, 1733
TspRI CASTG 3 cut(s) 138, 187, 524
VpaK11BI GGWCC 1 cut(s) 1212
XagI CCTNNNNNAGG 1 cut(s) 1756
XapI RAATTY 6 cut(s) 35, 361, 635, 1006, 1129, 1294
XceI RCATGY 4 cut(s) 51, 71, 389, 1160
XmiI GTMKAC 2 cut(s) 706, 1591
XmnI GAANNNNTTC 4 cut(s) 203, 635, 639, 1193
XspI CTAG 7 cut(s) 102, 410, 446, 699, 888, 1424, 1469
ZrmI AGTACT 1 cut(s) 751
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.