Rh3AG306000

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000183
Physical Location & Seq
Forward (+)
38015434 .. 38035745
20312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG306000.1

Sequence Viewer

Length: 1056 bp
ATGGTCAATCAGTATAGATACATGACAGTAACCTGTATTCTCTGTATTCAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCCGGAACTGAAGCTCTGGGGCTTCAATGATAAGCTTCCAGCTTTATTGTCAACAATTTTGACAACAACCAAAAATTTCCTGCCAACTTATGATTGTTTCAAGGTTATTAAAGAAAATATGGAACGTCTGATAAAGAACACTAATATGAAGCCTCCGAGTCATGCTGAATACTTGAAACTGCAAGTTTTGTACCAGAGATTCTACGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCATTTATTCCAGAGCTTTGGTCCCAGGTTCAACATGAGGAGATTGATTTTAGTTCAGATGGCAGTTTAGCTATGGACAGGCTTATGTTTTCAATCAGTCTAGGCTTGGATTCAATCAGCGTATCTAGAGGTGTTGCACGAATCACTCCTACGAATGTGATTTCCGGTTCAAGATTTGATTTCTTGAAGTTTGAGACGTTGATTAAGGAGTTGTTCCCACTAGGCTTGCTTTGGGAATTGAATGACATGATCGACCAACTTCTTTCTGATCGTGATATTGACTCGATCCTGATGCATTCTTTTATTGAGAGAAACATCCATCGCCTATATCTCTTTTTAAGGATCAGTGAGCCAGATGATTCTGAAGTGAGGGTGCATAACTCAACAATGAACAGATGGTGGTCATTTAAAAGAGATACTTATAGTAATGTGGTGTGGTTGGTTACGGTAGAGAGAAACAAAAGTTCAAATGCATTGGATCATCTTCTGTGGACCCACAATCTTGGAGTGTTTATACCACCTGAAATTAGTGCTTATCTTGCACCCATAGATCTTAAAAGGATACGCAAGCCATCCGAGTTTCTACGGATCTCAAGGCATGTTATTGTTCATCAACTTTCTCAGATATGGAATCATAGCAAATCTAGAGGGATTGAGATGAAGTCAGGAATTTATTTTGCGATGCAATCTGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

351

Amino Acids

40.94

Weight (kDa)

6.6

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 16 - 108 8.7e-16 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 4 cut(s) 637, 707, 843, 953
AcsI RAATTY 2 cut(s) 172, 1026
AcuI CTGAAG 2 cut(s) 128, 741
AfaI GTAC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 5 cut(s) 112, 133, 140, 373, 428
AluI AGCT 5 cut(s) 112, 133, 140, 373, 428
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 4 cut(s) 637, 707, 843, 953
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 172, 1026
AspS9I GGNCC 2 cut(s) 378, 849
AvaII GGWCC 2 cut(s) 378, 849
BccI CCATC 4 cut(s) 410, 684, 747, 937
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 1 cut(s) 383
BciVI GTATCC 2 cut(s) 64, 912
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 4 cut(s) 458, 483, 578, 1002
BfuI GTATCC 2 cut(s) 64, 912
BglII AGATCT 1 cut(s) 907
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 2 cut(s) 378, 849
BmgT120I GGNCC 2 cut(s) 378, 849
BmiI GGNNCC 2 cut(s) 380, 851
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 639, 1029
BpuEI CTTGAG 1 cut(s) 934
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 2 cut(s) 100, 521
Bse1I ACTGG 2 cut(s) 54, 316
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 672, 929
BseMII CTCAG 1 cut(s) 992
BseNI ACTGG 2 cut(s) 54, 316
BseRI GAGGAG 1 cut(s) 410
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 2 cut(s) 101, 522
BslFI GGGAC 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 545
BsmBI CGTCTC 1 cut(s) 545
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 1 cut(s) 53
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 991
BspEI TCCGGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 380, 851
BspPI GGATC 4 cut(s) 637, 707, 843, 953
BsrI ACTGG 2 cut(s) 54, 316
BssECI CCNNGG 1 cut(s) 381
BssMI GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 2 cut(s) 28, 805
BstC8I GCNNGC 2 cut(s) 584, 926
BstDEI CTNAG 1 cut(s) 978
BstF5I GGATG 2 cut(s) 672, 929
BstKTI GATC 7 cut(s) 609, 628, 645, 702, 838, 910, 948
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
BstMWI GCNNNNNNNGC 2 cut(s) 59, 896
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 2 cut(s) 326, 959
BstSCI CCNGG 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 907, 945
BstXI CCANNNNNNTGG 2 cut(s) 375, 860
BstYI RGATCY 2 cut(s) 907, 945
BsuI GTATCC 2 cut(s) 64, 912
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 2 cut(s) 662, 1052
BtsCI GGATG 2 cut(s) 672, 929
BtsIMutI CAGTG 1 cut(s) 709
Cac8I GCNNGC 2 cut(s) 584, 926
Cfr13I GGNCC 2 cut(s) 378, 849
Csp6I GTAC 1 cut(s) 289
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 6 cut(s) 22, 260, 323, 392, 604, 956
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 978
DpnI GATC 7 cut(s) 608, 627, 644, 701, 837, 909, 947
DpnII GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
DraI TTTAAA 2 cut(s) 330, 766
Eco47I GGWCC 2 cut(s) 378, 849
Eco57I CTGAAG 2 cut(s) 128, 741
EcoRII CCWGG 1 cut(s) 381
EcoT22I ATGCAT 2 cut(s) 654, 832
Esp3I CGTCTC 1 cut(s) 545
FaeI CATG 6 cut(s) 25, 263, 326, 395, 607, 959
FalI AAGNNNNNCTT 2 cut(s) 760, 792
FaqI GGGAC 1 cut(s) 364
FatI CATG 6 cut(s) 21, 259, 322, 391, 603, 955
FokI GGATG 2 cut(s) 659, 916
FspBI CTAG 4 cut(s) 458, 483, 578, 1002
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 101, 522
Hin1II CATG 6 cut(s) 25, 263, 326, 395, 607, 959
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 7 cut(s) 256, 297, 467, 498, 638, 716, 988
HpaII CCGG 2 cut(s) 101, 522
Hpy166II GTNNAC 2 cut(s) 150, 849
Hpy188I TCNGA 8 cut(s) 228, 255, 349, 415, 625, 721, 934, 981
Hpy188III TCNNGA 9 cut(s) 101, 368, 483, 528, 541, 629, 646, 1002, 1023
Hpy8I GTNNAC 2 cut(s) 150, 849
HpyCH4III ACNGT 2 cut(s) 28, 805
HpyCH4IV ACGT 2 cut(s) 223, 554
HpyCH4V TGCA 8 cut(s) 280, 322, 494, 652, 733, 830, 899, 1042
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 896
HpyF3I CTNAG 1 cut(s) 978
HpySE526I ACGT 2 cut(s) 223, 554
Hsp92II CATG 6 cut(s) 25, 263, 326, 395, 607, 959
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
LweI GCATC 2 cut(s) 639, 1029
MaeI CTAG 4 cut(s) 458, 483, 578, 1002
MaeII ACGT 2 cut(s) 223, 554
MaeIII GTNAC 2 cut(s) 28, 799
MalI GATC 7 cut(s) 608, 627, 644, 701, 837, 909, 947
MboI GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
MboII GAAGA 1 cut(s) 833
MflI RGATCY 2 cut(s) 907, 945
MluCI AATT 7 cut(s) 91, 153, 172, 593, 882, 1026, 1051
MlyI GAGTC 2 cut(s) 265, 632
MnlI CCTC 5 cut(s) 261, 388, 479, 720, 998
Mph1103I ATGCAT 2 cut(s) 654, 832
MroI TCCGGA 1 cut(s) 100
MseI TTAA 6 cut(s) 207, 329, 561, 695, 765, 912
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 101, 522
MspR9I CCNGG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 2 cut(s) 59, 896
NdeII GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
NlaIII CATG 6 cut(s) 25, 263, 326, 395, 607, 959
NlaIV GGNNCC 2 cut(s) 380, 851
NsiI ATGCAT 2 cut(s) 654, 832
NspI RCATGY 2 cut(s) 326, 959
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 5 cut(s) 297, 467, 498, 716, 988
PleI GAGTC 2 cut(s) 264, 632
PpsI GAGTC 2 cut(s) 264, 632
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 380, 851
PspPI GGNCC 2 cut(s) 378, 849
PsuI RGATCY 2 cut(s) 907, 945
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 6 cut(s) 207, 329, 561, 695, 765, 912
Sau3AI GATC 7 cut(s) 606, 625, 642, 699, 835, 907, 945
Sau96I GGNCC 2 cut(s) 378, 849
SchI GAGTC 2 cut(s) 265, 632
ScrFI CCNGG 1 cut(s) 383
SfaNI GCATC 2 cut(s) 639, 1029
SinI GGWCC 2 cut(s) 378, 849
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 949
SmoI CTYRAG 1 cut(s) 949
Sse9I AATT 7 cut(s) 91, 153, 172, 593, 882, 1026, 1051
SspMI CTAG 4 cut(s) 458, 483, 578, 1002
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 2 cut(s) 28, 805
TaiI ACGT 2 cut(s) 226, 557
TaqI TCGA 2 cut(s) 609, 641
TasI AATT 7 cut(s) 91, 153, 172, 593, 882, 1026, 1051
TfiI GAWTC 5 cut(s) 297, 467, 498, 716, 988
Tru1I TTAA 6 cut(s) 207, 329, 561, 695, 765, 912
Tru9I TTAA 6 cut(s) 207, 329, 561, 695, 765, 912
TscAI CASTG 1 cut(s) 709
TspDTI ATGAA 4 cut(s) 260, 761, 956, 1031
TspGWI ACGGA 1 cut(s) 958
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 378, 849
XapI RAATTY 2 cut(s) 172, 1026
XbaI TCTAGA 2 cut(s) 482, 1001
XceI RCATGY 2 cut(s) 326, 959
XspI CTAG 4 cut(s) 458, 483, 578, 1002
Zsp2I ATGCAT 2 cut(s) 654, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.