Rroxscaffold_5G00358330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000183
Physical Location & Seq
Forward (+)
38412540 .. 38413363
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358330.1

Sequence Viewer

Length: 231 bp
ATGGAAGCACAGAGGCCTGCACACTTTCTTGAACAAATTCTCTTCATGGGGAGTACAAACTTTCTGGTTGAAAATGAGGTTCGAGGGCTCAGGATAAGAATGGATATGGTACAAAATCAAATTCAAAGTGAACCTCCTCCAGCTGCAATTGGATTGGATGAACTATATGTGCCGGAAACAATGGATTTGACATTGGACTCAACAAGGAATATAGAGGTGACGGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.67

Weight (kDa)

4.34

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 36, 120
AfaI GTAC 2 cut(s) 55, 111
AgsI TTSAA 3 cut(s) 32, 71, 125
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 36, 120
Asp700I GAANNNNTTC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 229
BanII GRGCYC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 89
BseGI GGATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 173
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 90
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 18
Csp6I GTAC 2 cut(s) 54, 110
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 16, 88, 143
CviKI_1 RGCY 3 cut(s) 16, 88, 143
CviQI GTAC 2 cut(s) 54, 110
DdeI CTNAG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 49
FaiI YATR 5 cut(s) 47, 107, 166, 168, 212
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 49
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 29, 91
Hpy8I GTNNAC 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 20, 146
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 49
LpnPI CCDG 5 cut(s) 30, 50, 76, 153, 186
Lsp1109I GCAGC 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 217
MboII GAAGA 1 cut(s) 34
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 3 cut(s) 36, 120, 147
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 6 cut(s) 6, 70, 77, 144, 147, 208
MroXI GAANNNNTTC 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 147
NlaIII CATG 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 2 cut(s) 55, 111
RsaNI GTAC 2 cut(s) 54, 110
SatI GCNGC 1 cut(s) 144
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 90
SetI ASST 4 cut(s) 81, 136, 145, 219
SgeI CNNG 9 cut(s) 29, 41, 58, 77, 95, 103, 152, 185, 216
Sse9I AATT 3 cut(s) 36, 120, 147
SseBI AGGCCT 1 cut(s) 16
StuI AGGCCT 1 cut(s) 16
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 82
TasI AATT 3 cut(s) 36, 120, 147
TatI WGTACW 1 cut(s) 53
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 34, 174
XapI RAATTY 2 cut(s) 36, 120
XmnI GAANNNNTTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.