Rh5AG501000

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
84843193 .. 84845469
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG501000.1

Sequence Viewer

Length: 495 bp
ATGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTACTGCCAAATCCAAAGATGACGAGGCTGCTTGAGACGGAGACGAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGGTACCGAATAATTGAATCAATGCTTGATTCGATTCGATTTGAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTAAAGCTGTGGGGCTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTCTGACAACAACCAAAAATTTCCTGCCAACTTATGATCGTTTCAAGGTTATTAAAGAAAATATGGAGCGTCTGATAAAGAACACTAATATGAATCCTCTGAGTCATGCGGAATACTTGAAACTGCAAGTTTTTGTACCAGAGATTCTACGATGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

164

Amino Acids

19.18

Weight (kDa)

9.63

Isoelectric Point (pI)

45.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 65 - 155 6.6e-17 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 14
AciI CCGC 3 cut(s) 96, 98, 443
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 3 cut(s) 111, 191, 471
AfiI CCNNNNNNNGG 3 cut(s) 21, 76, 164
AgsI TTSAA 5 cut(s) 56, 203, 304, 379, 454
AjiI CACGTC 1 cut(s) 180
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 6, 292, 313, 320
AluI AGCT 4 cut(s) 6, 292, 313, 320
Alw26I GTCTC 3 cut(s) 16, 137, 143
AlwNI CAGNNNCTG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 2 cut(s) 182, 231
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 352
Asp718I GGTACC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 24
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 123
BccI CCATC 2 cut(s) 15, 37
BciT130I CCWGG 1 cut(s) 107
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 3 cut(s) 16, 137, 143
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 2 cut(s) 99, 137
BlsI GCNGC 2 cut(s) 100, 138
Bme1390I CCNGG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 96, 185
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 76, 164
Bse1I ACTGG 2 cut(s) 158, 234
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 96, 185
BseLI CCNNNNNNNGG 3 cut(s) 21, 76, 164
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 2 cut(s) 158, 234
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 184, 233
BshNI GGYRCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 3 cut(s) 21, 76, 164
BsmAI GTCTC 3 cut(s) 16, 137, 143
BsmBI CGTCTC 3 cut(s) 16, 137, 143
BsnI GGCC 2 cut(s) 184, 233
Bsp1286I GDGCHC 1 cut(s) 158
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 1 cut(s) 370
BspACI CCGC 3 cut(s) 96, 98, 443
BspANI GGCC 2 cut(s) 184, 233
BspCNI CTCAG 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 14
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 189
BsrI ACTGG 2 cut(s) 158, 234
BssECI CCNNGG 2 cut(s) 96, 185
BssMI GATC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 41, 434
BstDSI CCRYGG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 3 cut(s) 16, 137, 143
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 1 cut(s) 123
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 184, 233
BtgI CCRYGG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 164
Cfr42I CCGCGG 1 cut(s) 99
CseI GACGC 1 cut(s) 392
Csp6I GTAC 3 cut(s) 110, 190, 470
CviAII CATG 2 cut(s) 172, 440
CviQI GTAC 3 cut(s) 110, 190, 470
DdeI CTNAG 2 cut(s) 41, 434
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 158
Esp3I CGTCTC 3 cut(s) 16, 137, 143
FaeI CATG 2 cut(s) 175, 443
FaiI YATR 7 cut(s) 88, 173, 264, 369, 398, 425, 441
FatI CATG 2 cut(s) 171, 439
Fnu4HI GCNGC 2 cut(s) 99, 137
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 99, 137
GluI GCNGC 2 cut(s) 99, 137
HaeIII GGCC 2 cut(s) 184, 233
HapII CCGG 1 cut(s) 15
HgaI GACGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 175, 443
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 7 cut(s) 37, 203, 215, 220, 427, 436, 478
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 177, 330
Hpy188I TCNGA 3 cut(s) 339, 408, 435
Hpy188III TCNNGA 2 cut(s) 15, 281
Hpy8I GTNNAC 2 cut(s) 177, 330
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 90, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 41, 434
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 2 cut(s) 175, 443
Kpn2I TCCGGA 1 cut(s) 14
KpnI GGTACC 1 cut(s) 193
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 370
LmnI GCTCC 1 cut(s) 400
Lsp1109I GCAGC 1 cut(s) 123
MaeII ACGT 1 cut(s) 179
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 3 cut(s) 30, 41, 44
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 5 cut(s) 83, 198, 271, 333, 352
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 5 cut(s) 70, 126, 180, 223, 441
MroI TCCGGA 1 cut(s) 14
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 98, 320
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 370
NlaIII CATG 2 cut(s) 175, 443
NlaIV GGNNCC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 210
NspI RCATGY 1 cut(s) 175
PfeI GAWTC 6 cut(s) 37, 203, 215, 220, 427, 478
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 2 cut(s) 100, 138
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 191
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 3 cut(s) 111, 191, 471
RsaNI GTAC 3 cut(s) 110, 190, 470
RseI CAYNNNNRTG 1 cut(s) 422
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 99, 137
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 107
SduI GDGCHC 1 cut(s) 158
SetI ASST 8 cut(s) 8, 47, 182, 191, 294, 315, 322, 384
Sfr303I CCGCGG 1 cut(s) 99
SgrBI CCGCGG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 83, 198, 271, 333, 352
SsiI CCGC 3 cut(s) 96, 98, 443
StyD4I CCNGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 218, 223
TasI AATT 5 cut(s) 83, 198, 271, 333, 352
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 6 cut(s) 37, 203, 215, 220, 427, 478
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 164
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.