Rorug07G0069600

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
5273941 .. 5279617
5677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0069600.1

Sequence Viewer

Length: 1524 bp
ATGAGGTCGTCGTCGTCGTCGTCTTGCTCGGATAGAATAGACATTGCCGCCAACGCTCAGAGGCTCGATGTCGACCATCGGATTTCGCTGCGTATCTACTTTCGGATCGCTAACACTCTTCTCAAACAGGCTGATATATTTCGACAAGAGAGGAATATTATAGACCTTTATGTCATGCTCCTAAGATTTTCGAGTTTGGCCTCCGAGACGATACCGTGTCATCGAGACTATAGAGCATCTGTTCAAAGAGAAAAGGATATTTTGAAAATGAAATTGTTGAATGCTCTCTGTGAACTGGAGAAATTAAAGCCAGCAGTGAAACAGAAGAATGATGAGTTTAACAGGAGAAATGCATATCAAAACAACGGGTGGGGCCATAATCATCAAATTCAAGCTCCTCCGAAGAAGCAAAATTTGATTAGTTATGACATAAACAAGGCAGCAAATCCAGCTTCAAAAGCACAGTTCTATCAAAATCCAGGGACTCAGTTTTCATATGCCAGGCCCATGGAGGAGCAATTTCGCAAACTATCCATAAATCTTCAGCCTCCAAAGGAGGATACTCTTTCCAAACATTCAATTTTGGGCCCGAATGGGCTTTATGGGCAGTGGCAGCCACCTAAAATTGATATAGGGGTTCAATATCCAAGCATTGTAGACTTGACTCCTCTTGAAATCCCAAGTCTGGAACAGTCCATAGAAGGCAAAAATGCGACTTTAAGCAATTCGGAACATGAAAGACCAAGTTTAGAACCGATTCCGACCCAGAGTAGTAACGATGGTCAGATACCTCATACTGAGGAACCTTCCCTTATTTCCTTCGAATCAATAGAACCTCCTGAACATACACAACTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTGCAAGATTTGATCCCAGCAATTTCACCCCAAGTCTCTGCGGTAGAAAGTGAATTGGAGACTCTCTCATCAGATGAATTTCTTCGTGCTGAATCTCCCCTGCAATTGCACATTTCAACAACGATGATGGATCACTTCTTGAAGTTAGCAAAGTCAAATACTAAAAAGGACTTAGAAACTTGTGGGATTCTAGCTGGTTCACTTAAAAACAGGAAGTTTTATGTTACAGCTCTCATCATACCAAAGCAAGAGTCAACGGCAAATTCTTGCCAAGCCACGCATGAAGAGGAGATATTTGAAGTTCAGGACAAACGATCTCTCTTCCCTCTTGGCTGGATACATACTCATCCTACACAGTCTTGTTTCATGTCGTCGATTGATGTTCACACGCATTATTCTTATCAGATTATGTTGCCCGAAGCTGTTGCAATTGTCATGGCACCAAGAGATAGTGCAAGAACCCATGGCATTTTCCGATTGACAACCCCGGGTGGCATGTCAGTCATTAGAAAGTGCCCGCAGCGTGGTTTTCATTCACATGATCAGCCACCAGATGGTGGGCCAATTTACAACACCTGTACAGATGTTTATATGAGCCCTAATCTTAAATTTGACGTCATCGATCTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

507

Amino Acids

57.31

Weight (kDa)

6.42

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
USP8_dimer PF08969 14 - 108 2.8e-12 USP8 dimerisation domain
JAB PF01398 329 - 437 1.7e-18 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB PF14464 348 - 430 2.8e-07 Prokaryotic homologs of the JAB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AatII GACGTC 1 cut(s) 1509
AccB1I GGYRCC 1 cut(s) 1330
AccB7I CCANNNNNTGG 2 cut(s) 1445, 1448
AccI GTMKAC 2 cut(s) 72, 657
AciI CCGC 3 cut(s) 48, 932, 1409
AclWI GGATC 3 cut(s) 113, 898, 1029
AcsI RAATTY 5 cut(s) 387, 412, 968, 1153, 1499
AcuI CTGAAG 2 cut(s) 527, 909
AcyI GRCGYC 1 cut(s) 1506
AfaI GTAC 2 cut(s) 882, 1471
AfiI CCNNNNNNNGG 4 cut(s) 685, 1415, 1445, 1448
AjnI CCWGG 2 cut(s) 478, 500
AluBI AGCT 5 cut(s) 395, 452, 1085, 1121, 1313
AluI AGCT 5 cut(s) 395, 452, 1085, 1121, 1313
Alw26I GTCTC 4 cut(s) 200, 219, 931, 944
AlwI GGATC 3 cut(s) 113, 898, 1029
Ama87I CYCGRG 1 cut(s) 1378
AoxI GGCC 5 cut(s) 198, 373, 503, 586, 1451
ApaI GGGCCC 1 cut(s) 590
ApeKI GCWGC 4 cut(s) 88, 440, 613, 1411
ApoI RAATTY 5 cut(s) 387, 412, 968, 1153, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 1127, 1159
Asp700I GAANNNNTTC 2 cut(s) 756, 972
AspS9I GGNCC 5 cut(s) 373, 504, 586, 587, 1451
AsuC2I CCSGG 2 cut(s) 1379, 1380
AsuHPI GGTGA 1 cut(s) 909
AsuII TTCGAA 1 cut(s) 822
AvaI CYCGRG 1 cut(s) 1378
BaeGI GKGCMC 2 cut(s) 590, 1409
BanI GGYRCC 1 cut(s) 1330
BanII GRGCYC 2 cut(s) 590, 1490
BbvI GCAGC 4 cut(s) 75, 452, 625, 1423
BccI CCATC 4 cut(s) 84, 773, 1012, 1439
BceAI ACGGC 1 cut(s) 1164
BcgI CGANNNNNNTGC 2 cut(s) 1298, 1332
BciT130I CCWGG 2 cut(s) 480, 502
BciVI GTATCC 2 cut(s) 553, 1221
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 2 cut(s) 1379, 1380
BcoDI GTCTC 4 cut(s) 200, 219, 931, 944
BfaI CTAG 1 cut(s) 1082
BfmI CTRYAG 1 cut(s) 229
BfuI GTATCC 2 cut(s) 553, 1221
BisI GCNGC 5 cut(s) 48, 89, 441, 614, 1412
BlsI GCNGC 5 cut(s) 49, 90, 442, 615, 1413
Bme1390I CCNGG 4 cut(s) 480, 502, 1379, 1380
BmeT110I CYCGRG 1 cut(s) 1378
BmgT120I GGNCC 5 cut(s) 373, 504, 586, 587, 1451
BmiI GGNNCC 4 cut(s) 374, 588, 804, 1332
BmrFI CCNGG 4 cut(s) 480, 502, 1379, 1380
BmsI GCATC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 822
BpuMI CCSGG 2 cut(s) 1379, 1380
Bsa29I ATCGAT 1 cut(s) 1512
BsaHI GRCGYC 1 cut(s) 1506
BsaJI CCNNGG 5 cut(s) 479, 507, 1354, 1377, 1378
Bsc4I CCNNNNNNNGG 4 cut(s) 685, 1415, 1445, 1448
Bse1I ACTGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 2 cut(s) 480, 502
BseCI ATCGAT 1 cut(s) 1512
BseDI CCNNGG 5 cut(s) 479, 507, 1354, 1377, 1378
BseGI GGATG 1 cut(s) 1237
BseLI CCNNNNNNNGG 4 cut(s) 685, 1415, 1445, 1448
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 3 cut(s) 71, 500, 789
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 5 cut(s) 387, 527, 657, 861, 1193
BseSI GKGCMC 2 cut(s) 590, 1409
BseXI GCAGC 4 cut(s) 75, 452, 625, 1423
BseYI CCCAGC 1 cut(s) 907
BshFI GGCC 5 cut(s) 200, 375, 505, 588, 1453
BshNI GGYRCC 1 cut(s) 1330
BshVI ATCGAT 1 cut(s) 1512
BsiHKCI CYCGRG 1 cut(s) 1378
BsiSI CCGG 1 cut(s) 1379
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 4 cut(s) 685, 1415, 1445, 1448
BsmAI GTCTC 4 cut(s) 200, 219, 931, 944
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 496
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 5 cut(s) 200, 375, 505, 588, 1453
BsoBI CYCGRG 1 cut(s) 1378
Bsp119I TTCGAA 1 cut(s) 822
Bsp120I GGGCCC 1 cut(s) 586
Bsp1286I GDGCHC 3 cut(s) 590, 1409, 1490
Bsp1407I TGTACA 1 cut(s) 1469
Bsp143I GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
Bsp19I CCATGG 2 cut(s) 507, 1354
BspACI CCGC 3 cut(s) 48, 932, 1409
BspANI GGCC 5 cut(s) 200, 375, 505, 588, 1453
BspCNI CTCAG 3 cut(s) 70, 499, 790
BspDI ATCGAT 1 cut(s) 1512
BspLI GGNNCC 4 cut(s) 374, 588, 804, 1332
BspPI GGATC 3 cut(s) 113, 898, 1029
BspT104I TTCGAA 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 1330
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 1469
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 5 cut(s) 479, 507, 1354, 1377, 1378
BssMI GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
BssNI GRCGYC 1 cut(s) 1506
BssT1I CCWWGG 2 cut(s) 507, 1354
Bst2UI CCWGG 2 cut(s) 480, 502
Bst4CI ACNGT 4 cut(s) 216, 465, 693, 1248
Bst6I CTCTTC 3 cut(s) 123, 1170, 1217
BstACI GRCGYC 1 cut(s) 1506
BstAUI TGTACA 1 cut(s) 1469
BstBI TTCGAA 1 cut(s) 822
BstC8I GCNNGC 2 cut(s) 312, 1409
BstDEI CTNAG 5 cut(s) 57, 182, 486, 798, 1063
BstDSI CCRYGG 2 cut(s) 507, 1354
BstF5I GGATG 1 cut(s) 1237
BstKTI GATC 6 cut(s) 108, 906, 1024, 1208, 1435, 1516
BstMAI GTCTC 4 cut(s) 200, 219, 931, 944
BstMBI GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
BstMWI GCNNNNNNNGC 5 cut(s) 53, 449, 458, 604, 613
BstNI CCWGG 2 cut(s) 480, 502
BstNSI RCATGY 1 cut(s) 1390
BstSCI CCNGG 4 cut(s) 478, 500, 1377, 1378
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 2 cut(s) 590, 1409
BstV1I GCAGC 4 cut(s) 75, 452, 625, 1423
BstXI CCANNNNNNTGG 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 1512
BsuI GTATCC 2 cut(s) 553, 1221
BsuRI GGCC 5 cut(s) 200, 375, 505, 588, 1453
BsuTUI ATCGAT 1 cut(s) 1512
BtgI CCRYGG 2 cut(s) 507, 1354
BtsCI GGATG 1 cut(s) 1237
BtsI GCAGTG 2 cut(s) 321, 614
BtsIMutI CAGTG 2 cut(s) 321, 614
Cac8I GCNNGC 2 cut(s) 312, 1409
Cfr13I GGNCC 5 cut(s) 373, 504, 586, 587, 1451
Cfr9I CCCGGG 1 cut(s) 1378
ClaI ATCGAT 1 cut(s) 1512
Csp6I GTAC 2 cut(s) 881, 1470
CviAII CATG 9 cut(s) 175, 508, 734, 1172, 1258, 1327, 1355, 1387, 1430
CviQI GTAC 2 cut(s) 881, 1470
DdeI CTNAG 5 cut(s) 57, 182, 486, 798, 1063
DpnI GATC 6 cut(s) 107, 905, 1023, 1207, 1434, 1515
DpnII GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 3 cut(s) 123, 1170, 1217
EarI CTCTTC 3 cut(s) 123, 1170, 1217
Eco130I CCWWGG 2 cut(s) 507, 1354
Eco24I GRGCYC 2 cut(s) 590, 1490
Eco57I CTGAAG 2 cut(s) 527, 909
Eco88I CYCGRG 1 cut(s) 1378
EcoRII CCWGG 2 cut(s) 478, 500
EcoT14I CCWWGG 2 cut(s) 507, 1354
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 590, 1490
ErhI CCWWGG 2 cut(s) 507, 1354
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 9 cut(s) 178, 511, 737, 1175, 1261, 1330, 1358, 1390, 1433
FaqI GGGAC 1 cut(s) 496
FatI CATG 9 cut(s) 174, 507, 733, 1171, 1257, 1326, 1354, 1386, 1429
FauI CCCGC 1 cut(s) 1416
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 1432
FblI GTMKAC 2 cut(s) 72, 657
Fnu4HI GCNGC 5 cut(s) 48, 89, 441, 614, 1412
FokI GGATG 1 cut(s) 1224
FriOI GRGCYC 2 cut(s) 590, 1490
Fsp4HI GCNGC 5 cut(s) 48, 89, 441, 614, 1412
FspBI CTAG 1 cut(s) 1082
GluI GCNGC 5 cut(s) 48, 89, 441, 614, 1412
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 5 cut(s) 200, 375, 505, 588, 1453
HapII CCGG 1 cut(s) 1379
Hin1I GRCGYC 1 cut(s) 1506
Hin1II CATG 9 cut(s) 178, 511, 737, 1175, 1261, 1330, 1358, 1390, 1433
HincII GTYRAC 2 cut(s) 73, 1146
HindII GTYRAC 2 cut(s) 73, 1146
HinfI GANTC 8 cut(s) 484, 664, 757, 824, 952, 983, 1078, 1142
HpaII CCGG 1 cut(s) 1379
HphI GGTGA 1 cut(s) 909
Hpy166II GTNNAC 6 cut(s) 73, 293, 658, 1091, 1146, 1276
Hpy188III TCNNGA 6 cut(s) 224, 671, 686, 839, 1030, 1196
Hpy8I GTNNAC 6 cut(s) 73, 293, 658, 1091, 1146, 1276
Hpy99I CGWCG 5 cut(s) 13, 16, 19, 22, 1267
HpyAV CCTTC 4 cut(s) 695, 816, 829, 876
HpyCH4III ACNGT 4 cut(s) 216, 465, 693, 1248
HpyCH4IV ACGT 1 cut(s) 1506
HpyCH4V TGCA 6 cut(s) 353, 895, 994, 1000, 1319, 1346
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 449, 458, 604, 613
HpyF3I CTNAG 5 cut(s) 57, 182, 486, 798, 1063
HpySE526I ACGT 1 cut(s) 1506
Hsp92I GRCGYC 1 cut(s) 1506
Hsp92II CATG 9 cut(s) 178, 511, 737, 1175, 1261, 1330, 1358, 1390, 1433
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
LmnI GCTCC 3 cut(s) 183, 400, 514
Lsp1109I GCAGC 4 cut(s) 75, 452, 625, 1423
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 1082
MaeII ACGT 1 cut(s) 1506
MaeIII GTNAC 2 cut(s) 773, 1114
MalI GATC 6 cut(s) 107, 905, 1023, 1207, 1434, 1515
MboI GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
MboII GAAGA 8 cut(s) 110, 337, 415, 533, 965, 1187, 1204, 1508
MfeI CAATTG 2 cut(s) 995, 1320
MhlI GDGCHC 3 cut(s) 590, 1409, 1490
MlyI GAGTC 4 cut(s) 478, 658, 946, 1151
MmeI TCCRAC 1 cut(s) 785
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 2 cut(s) 756, 972
MseI TTAA 5 cut(s) 305, 339, 719, 1095, 1497
MslI CAYNNNNRTG 1 cut(s) 1428
MspI CCGG 1 cut(s) 1379
MspR9I CCNGG 4 cut(s) 480, 502, 1379, 1380
MunI CAATTG 2 cut(s) 995, 1320
Mva1269I GAATGC 1 cut(s) 286
MvaI CCWGG 2 cut(s) 480, 502
MwoI GCNNNNNNNGC 5 cut(s) 53, 449, 458, 604, 613
NciI CCSGG 2 cut(s) 1379, 1380
NcoI CCATGG 2 cut(s) 507, 1354
NdeI CATATG 1 cut(s) 496
NdeII GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
NlaIII CATG 9 cut(s) 178, 511, 737, 1175, 1261, 1330, 1358, 1390, 1433
NlaIV GGNNCC 4 cut(s) 374, 588, 804, 1332
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 1 cut(s) 1390
NspV TTCGAA 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 17
PctI GAATGC 1 cut(s) 286
PdmI GAANNNNTTC 2 cut(s) 756, 972
PfeI GAWTC 4 cut(s) 757, 824, 983, 1078
PflMI CCANNNNNTGG 2 cut(s) 1445, 1448
PkrI GCNGC 5 cut(s) 49, 90, 442, 615, 1413
PleI GAGTC 4 cut(s) 478, 658, 946, 1150
PpsI GAGTC 4 cut(s) 478, 658, 946, 1150
Psp6I CCWGG 2 cut(s) 478, 500
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 2 cut(s) 478, 500
PspN4I GGNNCC 4 cut(s) 374, 588, 804, 1332
PspOMI GGGCCC 1 cut(s) 586
PspPI GGNCC 5 cut(s) 373, 504, 586, 587, 1451
RsaI GTAC 2 cut(s) 882, 1471
RsaNI GTAC 2 cut(s) 881, 1470
RseI CAYNNNNRTG 1 cut(s) 1428
SalI GTCGAC 1 cut(s) 71
SaqAI TTAA 5 cut(s) 305, 339, 719, 1095, 1497
SatI GCNGC 5 cut(s) 48, 89, 441, 614, 1412
Sau3AI GATC 6 cut(s) 105, 903, 1021, 1205, 1432, 1513
Sau96I GGNCC 5 cut(s) 373, 504, 586, 587, 1451
SchI GAGTC 4 cut(s) 478, 658, 946, 1151
ScrFI CCNGG 4 cut(s) 480, 502, 1379, 1380
SduI GDGCHC 3 cut(s) 590, 1409, 1490
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 822
SmaI CCCGGG 1 cut(s) 1380
SmiMI CAYNNNNRTG 1 cut(s) 1428
SsiI CCGC 3 cut(s) 48, 932, 1409
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 1082
StyD4I CCNGG 4 cut(s) 478, 500, 1377, 1378
StyI CCWWGG 2 cut(s) 507, 1354
TaaI ACNGT 4 cut(s) 216, 465, 693, 1248
TaiI ACGT 1 cut(s) 1509
TaqI TCGA 9 cut(s) 66, 72, 142, 191, 223, 822, 1265, 1512, 1519
TatI WGTACW 2 cut(s) 880, 1469
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 4 cut(s) 757, 824, 983, 1078
Tru1I TTAA 5 cut(s) 305, 339, 719, 1095, 1497
Tru9I TTAA 5 cut(s) 305, 339, 719, 1095, 1497
TscAI CASTG 2 cut(s) 321, 614
TseI GCWGC 4 cut(s) 88, 440, 613, 1411
TspDTI ATGAA 7 cut(s) 284, 483, 750, 981, 1188, 1246, 1412
TspMI CCCGGG 1 cut(s) 1378
TspRI CASTG 2 cut(s) 321, 614
Van91I CCANNNNNTGG 2 cut(s) 1445, 1448
XapI RAATTY 5 cut(s) 387, 412, 968, 1153, 1499
XceI RCATGY 1 cut(s) 1390
XmaI CCCGGG 1 cut(s) 1378
XmiI GTMKAC 2 cut(s) 72, 657
XmnI GAANNNNTTC 2 cut(s) 756, 972
XspI CTAG 1 cut(s) 1082
ZraI GACGTC 1 cut(s) 1507
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.