Rmu_sc0010523.1_g000005

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010523.1
OG0000183
Physical Location & Seq
Reverse (-)
23681 .. 25923
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010523.1_g000005.1.cds

Sequence Viewer

Length: 834 bp
atgtttgttggaatgggcagcttctcggaccctcctgaggcacaggggcttgcacactttctagaacacatgctcttcatggggagtacagcgtttcaagatgaaaatgagtatgacagttacttgtctaagcacggagggtcatcaaatgcatgcactcgtgaagagaatacttcgtaccactttgaggtgaaaccagagtttcttaagggtgccttgtcaagattttctcagttctttgtttcacctctaatgaaaagtgaagccatggagagagagttacagtctatagattcagagttcaaccgggttctgcaaaatgatttttgtcgccttgaacaacttcaaggccatacagccacacctggtcacccatttaataaattcacttggggaaataagaaaagcttggatgatgcaagggaaagggggataaacttgcgtcagcaaatactgaaattgtacagagactattaccatggtggattgatgaagctagttgtcattggtggagaatctcttgatatacttgagcagtgggttttggaattgtttggagatatcaaaaaaggtcccccagtaaacctggagttcaaggcagagggtcctatttggaatgctggaaaactttacaggctagaggctgttaatgatgttcacatgctccacttagcatggacacttccatgtcttaatgaacactatttgaaaagcccagattattttttaagtcatctccttgagcatggtaagatattcattattaggtattttgatgttaatgattgcctctgcagagaacaaactgttcatattggacaaaggggagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

277

Amino Acids

31.89

Weight (kDa)

5.8

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 3 cut(s) 88, 179, 464
AfiI CCNNNNNNNGG 2 cut(s) 37, 187
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 6 cut(s) 98, 304, 338, 347, 595, 709
AjnI CCWGG 2 cut(s) 364, 585
AluBI AGCT 4 cut(s) 21, 408, 496, 830
AluI AGCT 4 cut(s) 21, 408, 496, 830
Alw26I GTCTC 1 cut(s) 462
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 28, 572, 605
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 3 cut(s) 202, 237, 362
AvaII GGWCC 3 cut(s) 28, 572, 605
AxyI CCTNAGG 1 cut(s) 36
BanI GGYRCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 366, 587
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 3 cut(s) 62, 497, 638
BfmI CTRYAG 2 cut(s) 288, 793
BfrI CTTAAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 3 cut(s) 308, 366, 587
Bme18I GGWCC 3 cut(s) 28, 572, 605
BmgT120I GGNCC 3 cut(s) 28, 572, 605
BmiI GGNNCC 4 cut(s) 30, 214, 574, 606
BmrFI CCNGG 3 cut(s) 308, 366, 587
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 608
BpuEI CTTGAG 2 cut(s) 551, 761
BpuMI CCSGG 1 cut(s) 308
BsaJI CCNNGG 2 cut(s) 267, 478
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 187
Bse1I ACTGG 1 cut(s) 578
Bse21I CCTNAGG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 366, 587
BseDI CCNNGG 2 cut(s) 267, 478
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 37, 187
BseMII CTCAG 2 cut(s) 27, 245
BseNI ACTGG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 351
BshNI GGYRCC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 2 cut(s) 37, 187
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 558
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 462
Bsp19I CCATGG 2 cut(s) 267, 478
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 2 cut(s) 28, 244
BspLI GGNNCC 4 cut(s) 30, 214, 574, 606
BspMAI CTGCAG 1 cut(s) 797
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 267, 478
BssSI CACGAG 1 cut(s) 159
BssT1I CCWWGG 2 cut(s) 267, 478
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 366, 587
Bst4CI ACNGT 3 cut(s) 119, 285, 808
Bst6I CTCTTC 2 cut(s) 80, 159
BstAFI CTTAAG 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 51, 154
BstDEI CTNAG 4 cut(s) 36, 129, 231, 670
BstDSI CCRYGG 2 cut(s) 267, 478
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 1 cut(s) 418
BstMAI GTCTC 1 cut(s) 462
BstNI CCWGG 2 cut(s) 366, 587
BstNSI RCATGY 3 cut(s) 73, 156, 664
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 3 cut(s) 306, 364, 585
BstSFI CTRYAG 2 cut(s) 288, 793
BstV1I GCAGC 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 36
BsuRI GGCC 1 cut(s) 351
BtgI CCRYGG 2 cut(s) 267, 478
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 2 cut(s) 51, 154
Cfr13I GGNCC 3 cut(s) 28, 572, 605
CseI GACGC 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 364
Csp6I GTAC 3 cut(s) 87, 178, 463
CviAII CATG 9 cut(s) 70, 79, 153, 268, 479, 661, 675, 687, 746
CviQI GTAC 3 cut(s) 87, 178, 463
DdeI CTNAG 4 cut(s) 36, 129, 231, 670
Eam1104I CTCTTC 2 cut(s) 80, 159
EarI CTCTTC 2 cut(s) 80, 159
Eco130I CCWWGG 2 cut(s) 267, 478
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 3 cut(s) 28, 572, 605
Eco81I CCTNAGG 1 cut(s) 36
Eco91I GGTNACC 1 cut(s) 368
EcoO109I RGGNCCY 2 cut(s) 572, 605
EcoO65I GGTNACC 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 364, 585
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 267, 478
EcoT22I ATGCAT 1 cut(s) 154
ErhI CCWWGG 2 cut(s) 267, 478
FaeI CATG 9 cut(s) 73, 82, 156, 271, 482, 664, 678, 690, 749
FalI AAGNNNNNCTT 5 cut(s) 200, 232, 392, 424, 814
FaqI GGGAC 1 cut(s) 558
FatI CATG 9 cut(s) 69, 78, 152, 267, 478, 660, 674, 686, 745
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 3 cut(s) 62, 497, 638
GluI GCNGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 1 cut(s) 351
HapII CCGG 1 cut(s) 307
HgaI GACGC 1 cut(s) 431
Hin1II CATG 9 cut(s) 73, 82, 156, 271, 482, 664, 678, 690, 749
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 2 cut(s) 293, 515
HpaII CCGG 1 cut(s) 307
HphI GGTGA 3 cut(s) 202, 237, 362
Hpy166II GTNNAC 2 cut(s) 583, 658
Hpy188I TCNGA 2 cut(s) 28, 298
Hpy188III TCNNGA 6 cut(s) 35, 62, 98, 161, 222, 521
Hpy8I GTNNAC 2 cut(s) 583, 658
HpyCH4III ACNGT 3 cut(s) 119, 285, 808
HpyCH4V TGCA 6 cut(s) 53, 152, 156, 316, 419, 795
HpyF3I CTNAG 4 cut(s) 36, 129, 231, 670
Hsp92II CATG 9 cut(s) 73, 82, 156, 271, 482, 664, 678, 690, 749
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 669, 827
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 406
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 3 cut(s) 62, 497, 638
MaeIII GTNAC 3 cut(s) 119, 279, 368
MboII GAAGA 2 cut(s) 67, 176
MluCI AATT 3 cut(s) 383, 458, 548
MnlI CCTC 8 cut(s) 31, 42, 131, 181, 258, 595, 634, 800
Mph1103I ATGCAT 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 6 cut(s) 207, 378, 648, 693, 728, 780
MslI CAYNNNNRTG 1 cut(s) 685
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 3 cut(s) 308, 366, 587
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 366, 587
NciI CCSGG 1 cut(s) 308
NcoI CCATGG 2 cut(s) 267, 478
NlaIII CATG 9 cut(s) 73, 82, 156, 271, 482, 664, 678, 690, 749
NlaIV GGNNCC 4 cut(s) 30, 214, 574, 606
NmuCI GTSAC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 3 cut(s) 73, 156, 664
PaeI GCATGC 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 293, 515
PkrI GCNGC 1 cut(s) 20
PpuMI RGGWCCY 2 cut(s) 572, 605
Psp5II RGGWCCY 2 cut(s) 572, 605
Psp6I CCWGG 2 cut(s) 364, 585
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 2 cut(s) 364, 585
PspN4I GGNNCC 4 cut(s) 30, 214, 574, 606
PspPI GGNCC 3 cut(s) 28, 572, 605
PspPPI RGGWCCY 2 cut(s) 572, 605
PstI CTGCAG 1 cut(s) 797
RsaI GTAC 3 cut(s) 88, 179, 464
RsaNI GTAC 3 cut(s) 87, 178, 463
RseI CAYNNNNRTG 1 cut(s) 685
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 6 cut(s) 207, 378, 648, 693, 728, 780
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 3 cut(s) 28, 572, 605
ScrFI CCNGG 3 cut(s) 308, 366, 587
SexAI ACCWGGT 1 cut(s) 364
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 2 cut(s) 288, 793
SinI GGWCC 3 cut(s) 28, 572, 605
SmiMI CAYNNNNRTG 1 cut(s) 685
SmlI CTYRAG 3 cut(s) 206, 530, 740
SmoI CTYRAG 3 cut(s) 206, 530, 740
SphI GCATGC 1 cut(s) 156
Sse9I AATT 3 cut(s) 383, 458, 548
SspMI CTAG 3 cut(s) 62, 497, 638
StyD4I CCNGG 3 cut(s) 306, 364, 585
StyI CCWWGG 2 cut(s) 267, 478
TaaI ACNGT 3 cut(s) 119, 285, 808
TasI AATT 3 cut(s) 383, 458, 548
TatI WGTACW 2 cut(s) 86, 462
TfiI GAWTC 2 cut(s) 293, 515
Tru1I TTAA 6 cut(s) 207, 378, 648, 693, 728, 780
Tru9I TTAA 6 cut(s) 207, 378, 648, 693, 728, 780
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 7 cut(s) 67, 117, 269, 506, 711, 748, 800
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 3 cut(s) 28, 572, 605
XapI RAATTY 1 cut(s) 383
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 3 cut(s) 73, 156, 664
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 3 cut(s) 62, 497, 638
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.