Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000183

Physical Location & Seq

Genomic Coordinates Forward (+)

23306639 .. 23328662

Gene Structure 22024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGATGCCTTGCAAGGATCTTTTGGTCGTTGTTTCGGATTCTGGGAAGCTCTCGGTGTGTGCAGCGGTAGCATTTGGAGTTGGTGTGGGTTTTAAAGACGGCGTTTGCAAGGCAACCGAGTTTTTTGCCGGGTATTTACTGGAGCAAAGTTTGTCAGTGGACAACTTGTTTGTGTTTGTTCTGATTTTCAAGTACTTCAAAGTGCCACTTATGTATCAGGTCTTTTGTAATCCTTTTAGCATTCTAATTTGTGTTCCATATGTTCTCAAAATTTCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009791 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0055035 GO:0061024 GO:0071840 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TerC

Protein Analysis

94

Amino Acids

10.39

Weight (kDa)

8.29

Isoelectric Point (pI)

23.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01440
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis	RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata	RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora	Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa	Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha	Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana	Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	193, 202
AluBI	AGCT	1 cut(s)	52
AluI	AGCT	1 cut(s)	52
AlwI	GGATC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	273
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AsuC2I	CCSGG	1 cut(s)	133
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BbvI	GCAGC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BcnI	CCSGG	1 cut(s)	133
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bse1I	ACTGG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	1 cut(s)	52
CviKI_1	RGCY	1 cut(s)	52
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	97
FaiI	YATR	4 cut(s)	215, 262, 264, 281
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	1 cut(s)	132
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	40, 186
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	15, 65, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	4 cut(s)	30, 128, 145, 206
Lsp1109I	GCAGC	1 cut(s)	77
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	2 cut(s)	249, 273
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	133
Mva1269I	GAATGC	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	133
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	2 cut(s)	54, 225
Sse9I	AATT	2 cut(s)	249, 273
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	131
TasI	AATT	2 cut(s)	249, 273
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.