Rorug06G0037800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000183
Physical Location & Seq
Forward (+)
4739047 .. 4739523
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0037800.1

Sequence Viewer

Length: 477 bp
ATGGCTCTGGTTCTTTTACTTCTCTATGTGATAGGGTTGGCAATGGTTCCTCCCTCCTATACCCAGAACTCACAACAAGACTACCTCAATGCGCACAATGCGGCTCACACACAAGTCGGAGTGGCAAACATCATGTGGGACAGCACTGTTGCTGCCTACGCTCTGAACTACACCAAGTCAAGGATCGGGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGCGAAAATTTAGCCAAAGGCAGCGGCTCATTCACGGCCACTGCTGCGGTTAATTTGTGGGTGGCGGAAAAGCCTTACTACAACTACACTTCCAATGCTTGCACCGGCGGAAAGCAGTGCCTGCACTATACTCAAGTTGTGTGGGCAGAGTCTGTTAGGTTGGGGTGCGCTAGGCTTCAATGTAGCAATTTGTGGTGGTTTGTTACATGCAGCTATGATCCACCAGGCAACTACATCGGGGAGCATCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.32

Weight (kDa)

6.48

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 29 - 146 3.7e-14 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 93
AciI CCGC 5 cut(s) 101, 246, 269, 287, 330
AclWI GGATC 2 cut(s) 191, 434
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 1 cut(s) 435
AluI AGCT 1 cut(s) 435
AlwI GGATC 2 cut(s) 191, 434
AlwNI CAGNNNCTG 2 cut(s) 343, 374
AoxI GGCC 2 cut(s) 215, 258
ApeKI GCWGC 4 cut(s) 152, 243, 266, 432
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 2 cut(s) 94, 392
AspS9I GGNCC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 139, 253, 255, 444
BceAI ACGGC 2 cut(s) 238, 273
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 447
BfaI CTAG 1 cut(s) 393
BisI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
BlsI GCNGC 6 cut(s) 103, 154, 245, 248, 268, 434
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 139, 253, 255, 444
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 2 cut(s) 217, 260
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 217, 260
Bsp143I GATC 2 cut(s) 183, 439
BspACI CCGC 5 cut(s) 101, 246, 269, 287, 330
BspANI GGCC 2 cut(s) 217, 260
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 2 cut(s) 191, 434
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 2 cut(s) 183, 439
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 322, 344
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 466
BstHHI GCGC 2 cut(s) 94, 392
BstKTI GATC 2 cut(s) 186, 442
BstMBI GATC 2 cut(s) 183, 439
BstMWI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 445
BstV1I GCAGC 4 cut(s) 139, 253, 255, 444
BsuRI GGCC 2 cut(s) 217, 260
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 2 cut(s) 261, 344
BtsIMutI CAGTG 3 cut(s) 144, 261, 344
Cac8I GCNNGC 2 cut(s) 322, 344
CaiI CAGNNNCTG 2 cut(s) 343, 374
CfoI GCGC 2 cut(s) 94, 392
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviAII CATG 2 cut(s) 133, 429
CviJI RGCY 9 cut(s) 5, 104, 217, 236, 249, 260, 295, 397, 435
CviKI_1 RGCY 9 cut(s) 5, 104, 217, 236, 249, 260, 295, 397, 435
DdeI CTNAG 1 cut(s) 208
DpnI GATC 2 cut(s) 185, 441
DpnII GATC 2 cut(s) 183, 439
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 2 cut(s) 302, 345
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 136, 432
FaiI YATR 7 cut(s) 27, 60, 134, 351, 430, 438, 472
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 132, 428
Fnu4HI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
FspAI RTGCGCAY 1 cut(s) 93
FspBI CTAG 1 cut(s) 393
FspI TGCGCA 1 cut(s) 93
GlaI GCGC 2 cut(s) 93, 391
GluI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
HaeIII GGCC 2 cut(s) 217, 260
HapII CCGG 1 cut(s) 327
HhaI GCGC 2 cut(s) 94, 392
Hin1II CATG 2 cut(s) 136, 432
Hin6I GCGC 2 cut(s) 92, 390
HinP1I GCGC 2 cut(s) 92, 390
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 119, 165
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 195, 324, 346, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 136, 432
HspAI GCGC 2 cut(s) 92, 390
Kzo9I GATC 2 cut(s) 183, 439
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 6 cut(s) 77, 195, 340, 356, 432, 459
Lsp1109I GCAGC 4 cut(s) 139, 253, 255, 444
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 185, 441
MboI GATC 2 cut(s) 183, 439
MluCI AATT 3 cut(s) 229, 274, 409
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 4 cut(s) 60, 64, 95, 206
MseI TTAA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
NdeII GATC 2 cut(s) 183, 439
NlaIII CATG 2 cut(s) 136, 432
NlaIV GGNNCC 1 cut(s) 48
NsbI TGCGCA 1 cut(s) 93
NspI RCATGY 1 cut(s) 432
PkrI GCNGC 6 cut(s) 103, 154, 245, 248, 268, 434
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 215
PstNI CAGNNNCTG 2 cut(s) 343, 374
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
Sau3AI GATC 2 cut(s) 183, 439
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 447
SetI ASST 3 cut(s) 87, 383, 437
SgrAI CRCCGGYG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 3 cut(s) 229, 274, 409
SsiI CCGC 5 cut(s) 101, 246, 269, 287, 330
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 148
TasI AATT 3 cut(s) 229, 274, 409
TauI GCSGC 2 cut(s) 104, 249
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 3 cut(s) 151, 268, 344
TseI GCWGC 4 cut(s) 152, 243, 266, 432
TspRI CASTG 3 cut(s) 151, 268, 344
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 432
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.