Rroxscaffold_1G00008340

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000183
Physical Location & Seq
Forward (+)
10534584 .. 10538014
3431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008340.1

Sequence Viewer

Length: 363 bp
ATGAGGATGAAGGAGCAGCTGGGATATGTTCAGTGTGACTGGAAGGTGATATCCGGTGTTTTTGGCTTTTATTTCATAGTTCAGTCATCGGAGTACAACCCAATCTACTTGCAGCGGAGAGTTGACAACTTTATGAATGGTCTGGAAGACATATTGCAAGGATTGGACGATGATTCCTTTGAGAATTATAGAGGTGGGCTAATGGCAAAGCTATTGGCGAAAAATTCATTCTTTATAAATGAAACCAATCGATTGGAATCAGATTATCCGGGTAAAAGGTATACATTTGACTATGCAAAGAGGGTGGCAGAAGAGCTCAGCAGTCTACAGAAGGAGGATGTTGTCAACTTTTACAAGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

120

Amino Acids

14.16

Weight (kDa)

4.98

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PqqF-like_C_4 PF22456 1 - 84 1.3e-14 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 236
AccI GTMKAC 2 cut(s) 281, 325
AciI CCGC 1 cut(s) 115
AcsI RAATTY 1 cut(s) 223
AfaI GTAC 1 cut(s) 95
AluBI AGCT 3 cut(s) 19, 211, 316
AluI AGCT 3 cut(s) 19, 211, 316
Alw21I GWGCWC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 16, 112
ApoI RAATTY 1 cut(s) 223
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 28, 124
BcnI CCSGG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 326
BisI GCNGC 2 cut(s) 17, 113
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 2 cut(s) 18, 114
Bme1390I CCNGG 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 270
Bsa29I ATCGAT 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 250
BseGI GGATG 2 cut(s) 12, 343
BseJI GATNNNNATC 1 cut(s) 256
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 28, 124
BseYI CCCAGC 1 cut(s) 19
BshVI ATCGAT 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 2 cut(s) 54, 269
Bsp1286I GDGCHC 1 cut(s) 318
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 330
BspDI ATCGAT 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 44
BssNAI GTATAC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 2 cut(s) 12, 343
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 28, 124
BstV2I GAAGAC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 253
BstZ17I GTATAC 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 250
BtsCI GGATG 2 cut(s) 12, 343
BtsIMutI CAGTG 1 cut(s) 38
ClaI ATCGAT 1 cut(s) 250
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviJI RGCY 5 cut(s) 19, 66, 199, 211, 316
CviKI_1 RGCY 5 cut(s) 19, 66, 199, 211, 316
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Ecl136II GAGCTC 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 318
Eco32I GATATC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoRV GATATC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 318
FaiI YATR 8 cut(s) 27, 77, 134, 152, 189, 236, 282, 294
FblI GTMKAC 2 cut(s) 281, 325
Fnu4HI GCNGC 2 cut(s) 17, 113
FokI GGATG 2 cut(s) 19, 350
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 17, 113
GluI GCNGC 2 cut(s) 17, 113
GsaI CCCAGC 1 cut(s) 23
HapII CCGG 2 cut(s) 54, 269
HincII GTYRAC 2 cut(s) 124, 346
HindII GTYRAC 2 cut(s) 124, 346
HinfI GANTC 2 cut(s) 173, 257
HpaII CCGG 2 cut(s) 54, 269
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 4 cut(s) 124, 282, 326, 346
Hpy188I TCNGA 2 cut(s) 91, 262
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 4 cut(s) 124, 282, 326, 346
HpyAV CCTTC 3 cut(s) 4, 37, 325
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 112, 157, 296
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 359
LguI GCTCTTC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 5 cut(s) 5, 25, 67, 128, 282
Lsp1109I GCAGC 2 cut(s) 28, 124
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 35
MboII GAAGA 2 cut(s) 158, 323
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 2 cut(s) 184, 223
MnlI CCTC 3 cut(s) 185, 294, 328
MspA1I CMGCKG 2 cut(s) 19, 115
MspI CCGG 2 cut(s) 54, 269
MspR9I CCNGG 1 cut(s) 270
NciI CCSGG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 173, 257
PkrI GCNGC 2 cut(s) 18, 114
PsiI TTATAA 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SacI GAGCTC 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 2 cut(s) 17, 113
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 318
SetI ASST 7 cut(s) 21, 48, 196, 213, 281, 318, 362
SfcI CTRYAG 1 cut(s) 326
SgeI CNNG 8 cut(s) 32, 52, 66, 121, 155, 170, 281, 282
Sse9I AATT 2 cut(s) 184, 223
SsiI CCGC 1 cut(s) 115
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 184, 223
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 2 cut(s) 173, 257
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 2 cut(s) 16, 112
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 5 cut(s) 23, 64, 149, 216, 255
TspRI CASTG 1 cut(s) 38
XapI RAATTY 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 281, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.