Rmu_sc0001113.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001113.1
OG0000183
Physical Location & Seq
Reverse (-)
52250 .. 54512
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001113.1_g000013.1.cds

Sequence Viewer

Length: 645 bp
atggaggattggaggctattgagtattgagaatgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaacgagagagagaaaagggaaaaactgatattgatatttttcaacggacaagtacatcaccaaaaaagggtgttctggagtgtactctatttgcctcccaatgtacattcgaagggaataaaaccgaaacaagaactctatggactgacatcttcccttccgatgctggagatgcagatggctatgattttcatcacaacccaagtcctccatttacttttgaagaggacaaaggagcagctcgggtatggagttcagtgtggtcgggatttaaaatggggtatatgcttgactactcaaaaaaggcagcagaagaactcagaagcgccattcaggaggatgttatcaacttttacaagagagacaacaatcagcttgagcttgtgaccgctacgcatagcataactgcgtttcactccacatcttgtagtcaagagatcgaactcctctgtgaactcatcaactgttctcgacccctgccttatgttgtgaagtttcataaagttgttgagtatagttttctggtaaaaatctttttcgcaattcttgatcttcggcttccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.89

Weight (kDa)

4.54

Isoelectric Point (pI)

76.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 468
AfaI GTAC 3 cut(s) 133, 163, 184
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 122, 302
AluBI AGCT 3 cut(s) 320, 454, 460
AluI AGCT 3 cut(s) 320, 454, 460
Alw26I GTCTC 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 317, 386
AspLEI GCGC 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 321
BbvI GCAGC 2 cut(s) 329, 398
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 408
BisI GCNGC 2 cut(s) 318, 387
BlsI GCNGC 2 cut(s) 319, 388
BmeT110I CYCGRG 1 cut(s) 321
BmsI GCATC 2 cut(s) 232, 241
BpmI CTGGAG 2 cut(s) 176, 267
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 270
BseGI GGATG 1 cut(s) 424
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 2 cut(s) 329, 398
BsiHKCI CYCGRG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 189
Bsp1407I TGTACA 1 cut(s) 182
Bsp143I GATC 2 cut(s) 516, 628
BspACI CCGC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 182
BssMI GATC 2 cut(s) 516, 628
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 182
BstBI TTCGAA 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 2 cut(s) 519, 631
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 2 cut(s) 516, 628
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 329, 398
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 342
CfoI GCGC 1 cut(s) 407
Csp6I GTAC 3 cut(s) 132, 162, 183
CviJI RGCY 6 cut(s) 16, 261, 320, 454, 460, 637
CviKI_1 RGCY 6 cut(s) 16, 261, 320, 454, 460, 637
CviQI GTAC 3 cut(s) 132, 162, 183
DdeI CTNAG 1 cut(s) 398
DpnI GATC 2 cut(s) 518, 630
DpnII GATC 2 cut(s) 516, 628
DraI TTTAAA 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 318, 387
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 318, 387
GlaI GCGC 1 cut(s) 406
GluI GCNGC 2 cut(s) 318, 387
GsuI CTGGAG 2 cut(s) 176, 267
HaeII RGCGCY 1 cut(s) 408
HhaI GCGC 1 cut(s) 407
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 162, 533
Hpy188I TCNGA 2 cut(s) 241, 401
Hpy188III TCNNGA 6 cut(s) 155, 345, 413, 512, 549, 626
Hpy8I GTNNAC 2 cut(s) 162, 533
HpyAV CCTTC 2 cut(s) 185, 246
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 398
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 2 cut(s) 516, 628
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 5 cut(s) 140, 231, 398, 569, 587
Lsp1109I GCAGC 2 cut(s) 329, 398
LweI GCATC 2 cut(s) 232, 241
MaeIII GTNAC 1 cut(s) 463
MalI GATC 2 cut(s) 518, 630
MboI GATC 2 cut(s) 516, 628
MluCI AATT 1 cut(s) 621
MnlI CCTC 6 cut(s) 6, 184, 297, 298, 409, 536
MseI TTAA 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 2 cut(s) 516, 628
NmuCI GTSAC 1 cut(s) 463
NspV TTCGAA 1 cut(s) 189
PkrI GCNGC 2 cut(s) 319, 388
RsaI GTAC 3 cut(s) 133, 163, 184
RsaNI GTAC 3 cut(s) 132, 162, 183
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 318, 387
Sau3AI GATC 2 cut(s) 516, 628
SetI ASST 3 cut(s) 322, 456, 462
SfaNI GCATC 2 cut(s) 232, 241
SfuI TTCGAA 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 1 cut(s) 621
SsiI CCGC 1 cut(s) 468
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 189, 519, 550
TasI AATT 1 cut(s) 621
TatI WGTACW 3 cut(s) 131, 161, 182
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 317, 386
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 3 cut(s) 48, 260, 566
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.