Rorug05G0420400

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
58469946 .. 58472138
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0420400.1

Sequence Viewer

Length: 1800 bp
ATGGCCATCCAATTGAGTGCTTCTTCCTCATTCTCTTCTGTTCCTTTTTCCACCCGTTCATACACATACGATGTGTTTCTGAGTTTCAGAGGCGAGGATACACGCTACAATTTTACAGGTCATTTGCACAGAAATTTGGTTCAAAGGGGGATCAACACTTTCATAGATGATGATGATCTTCCAAGGGGAGAGGAAATATCAGAAGCACTTCTCCGATCCATTGAAGGATCAAAGCTCTCTCTCATTGTGTTCTCTGAAAACTACGCATCCTCAAAGTGGTGTTTGGATGAACTTGTTCATATCCTTGGATGTAGAAGATCAAAGAAACAAATGGTTTGGCCAATCTTTTACAAAGTGGATCCCTCGGACGTAAGACACCAAACAGGCACATTTAGTGAGGCACTTGCAGAGCATGAGCGCCGATTTGAAGATGACAAGAACAAGGTGTTAAGATGGAGAGCAGCTCTTTCAGAAGCAGCAAATTTATCTGGGTGGCATCTCCCGGGCGGGCATGAATATGAATCTAAATTTATTGCTAGAATCATTAAAGAGATTTCTGCACAAGTAATAAAACATACCCCTTTGAATGTGGCAAAGTTTCCAGTCGGGATAGAATCTCGTGTACAAGACATGCTTAAACACTTAGAAGTTGGGGGAAGTGATGTACGTATGGTAGGGATATGGGGAAGTGGTGGAATAGGGAAGACAACAATTGCTAAAGCTGTTTACAATACAATTGTCCATAAGTTTGAAGATAGTTGCTTTTTGGCAAATGTTAGAGAACGTTCAGTGCCACATGAAGGTCTAGCCAACCTACAGAACATTGTTCTTTCAAAGATTCTAAGGGGCAAACTGGAAGTAATCAATGTTGATGAAGGAATCAATTTGTTGCGTGAAAGGTTGAGACATAAAAGGATTTTGTTAATTCTTGATGATGTGAATAAATCGGATCAGTTAGACGCATTAGCCGGAGCACCTGATTGGTTTGGTCGTGGCAGCAGAATTATCATAACAACAAGAGATAAGAGTTTGTTTGTTCACGATGTCAATCATATATACAAAGCCAGGGAATTAGATCATCGCGAAGGTTGTGAGCTCTTCAGTTCAATTGCCTTCAAGAATAAGAGAATTTTAGATGACAATGAGAAGCACTTAGTTAGCACTATTGTTATATATGCTCAAGGCCTTCCGTTGGTCCTGGTAGTTTTGGGTTCACATCTATGTGGTAGATCGGTACATAAATGGCAAGCTATGCTAGATGGTTTTAGAAGAAATCTTCCCGAAGGCATTCAAGATATTCTCAAAGTCAGTTATGATGGACTGGAAAAAATAGTGAAAGAAGTTTTCCTCGACATTGCTTGTTTCTTCAAAGGTTGGAAGACAAATGATGTGATACAAATACTAGAAGGTTGTGACCGCAACAACCCCACACATAGTATTGAAGTTCTTGAAGAAAAAGCCCTCATAAATGTTTCTGAATTTGGTTTTATAAGTATGCATGATTTGCTAGAAGAGATGGGTAAAGACATAGTTCGGCAAGAATCTACAGAGCCTGGTGAGCGAAGCAGATTGTGGCATCATAAGGATGTGCATGATGTTCTAACAGGAAATACGGGAACAAAAAAAATTGAAGGTGTAATGATAAAGATGCCTACAGCAGATGAGATACGCTTGAGTCCTAAATGCTTCAAAAATATGAGAAATCTTAAAATTTTTATAAACGTCAATGGACGGTTTGGTGGAAAGGTTGATTATTATCCGAATCAGTTGCGGTTACTTGATGGCATGACTGTCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

599

Amino Acids

68.18

Weight (kDa)

8.02

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 192 1.8e-55 TIR domain
TIR_2 PF13676 25 - 121 2.9e-15 TIR domain
NB-ARC PF00931 206 - 375 4.7e-19 NB-ARC domain
WHD_ROQ1 PF23282 446 - 515 1.8e-15 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1490, 1718
AccII CGCG 1 cut(s) 1083
AciI CCGC 4 cut(s) 507, 1417, 1771, 1795
AclI AACGTT 1 cut(s) 784
AclWI GGATC 6 cut(s) 158, 210, 235, 353, 366, 957
AcoI YGGCCR 2 cut(s) 3, 338
AcsI RAATTY 6 cut(s) 133, 481, 527, 1128, 1478, 1710
AcuI CTGAAG 1 cut(s) 1084
AfaI GTAC 3 cut(s) 624, 666, 1236
AfiI CCNNNNNNNGG 3 cut(s) 276, 800, 1192
AjnI CCWGG 3 cut(s) 1064, 1197, 1552
AluBI AGCT 5 cut(s) 235, 464, 722, 1096, 1250
AluI AGCT 5 cut(s) 235, 464, 722, 1096, 1250
Alw21I GWGCWC 2 cut(s) 976, 1098
Alw26I GTCTC 1 cut(s) 898
AlwI GGATC 6 cut(s) 158, 210, 235, 353, 366, 957
AlwNI CAGNNNCTG 1 cut(s) 1553
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 3 cut(s) 3, 338, 1183
ApeKI GCWGC 3 cut(s) 461, 476, 996
ApoI RAATTY 6 cut(s) 133, 481, 527, 1128, 1478, 1710
Asp700I GAANNNNTTC 3 cut(s) 207, 294, 1287
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 1 cut(s) 1195
AsuC2I CCSGG 2 cut(s) 503, 504
AsuHPI GGTGA 1 cut(s) 1568
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 1 cut(s) 1195
BalI TGGCCA 2 cut(s) 5, 340
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 1098
BauI CACGAG 1 cut(s) 618
BbsI GAAGAC 2 cut(s) 710, 1385
Bbv12I GWGCWC 2 cut(s) 976, 1098
BbvI GCAGC 3 cut(s) 473, 488, 1008
BccI CCATC 6 cut(s) 14, 447, 1253, 1310, 1510, 1775
BcgI CGANNNNNNTGC 2 cut(s) 1750, 1784
BciT130I CCWGG 3 cut(s) 1066, 1199, 1554
BciVI GTATCC 1 cut(s) 91
BcnI CCSGG 2 cut(s) 503, 504
BcoDI GTCTC 1 cut(s) 898
BfaI CTAG 5 cut(s) 537, 806, 1256, 1403, 1508
BfmI CTRYAG 3 cut(s) 815, 1545, 1653
BfoI RGCGCY 1 cut(s) 421
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 3 cut(s) 462, 477, 997
BlsI GCNGC 3 cut(s) 463, 478, 998
Bme1390I CCNGG 5 cut(s) 503, 504, 1066, 1199, 1554
Bme18I GGWCC 1 cut(s) 1195
BmeT110I CYCGRG 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 1195
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 5 cut(s) 503, 504, 1066, 1199, 1554
BmsI GCATC 4 cut(s) 275, 505, 1585, 1638
BpiI GAAGAC 2 cut(s) 710, 1385
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpuEI CTTGAG 2 cut(s) 1164, 1693
BpuMI CCSGG 2 cut(s) 503, 504
BsaAI YACGTR 1 cut(s) 668
BsaBI GATNNNNATC 3 cut(s) 174, 1047, 1755
BsaJI CCNNGG 5 cut(s) 182, 304, 363, 502, 1065
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 800, 1192
Bse1I ACTGG 3 cut(s) 602, 858, 1326
Bse3DI GCAATG 1 cut(s) 1353
Bse8I GATNNNNATC 3 cut(s) 174, 1047, 1755
BseBI CCWGG 3 cut(s) 1066, 1199, 1554
BseDI CCNNGG 5 cut(s) 182, 304, 363, 502, 1065
BseGI GGATG 5 cut(s) 6, 266, 292, 314, 1591
BseJI GATNNNNATC 3 cut(s) 174, 1047, 1755
BseLI CCNNNNNNNGG 3 cut(s) 276, 800, 1192
BseMI GCAATG 1 cut(s) 1353
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 602, 858, 1326
BseXI GCAGC 3 cut(s) 473, 488, 1008
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 3 cut(s) 5, 340, 1185
BsiHKAI GWGCWC 2 cut(s) 976, 1098
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 2 cut(s) 503, 969
BslI CCNNNNNNNGG 3 cut(s) 276, 800, 1192
BsmAI GTCTC 1 cut(s) 898
BsmI GAATGC 1 cut(s) 1287
BsnI GGCC 3 cut(s) 5, 340, 1185
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 2 cut(s) 976, 1098
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
Bsp68I TCGCGA 1 cut(s) 1083
BspACI CCGC 4 cut(s) 507, 1417, 1771, 1795
BspANI GGCC 3 cut(s) 5, 340, 1185
BspCNI CTCAG 1 cut(s) 72
BspFNI CGCG 1 cut(s) 1083
BspLI GGNNCC 1 cut(s) 360
BspPI GGATC 6 cut(s) 158, 210, 235, 353, 366, 957
BspQI GCTCTTC 1 cut(s) 1103
BsrDI GCAATG 1 cut(s) 1353
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 3 cut(s) 602, 858, 1326
BssECI CCNNGG 5 cut(s) 182, 304, 363, 502, 1065
BssMI GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
BssSI CACGAG 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 182, 304
Bst2BI CACGAG 1 cut(s) 618
Bst2UI CCWGG 3 cut(s) 1066, 1199, 1554
Bst4CI ACNGT 2 cut(s) 1734, 1792
Bst6I CTCTTC 3 cut(s) 40, 1103, 1506
BstAPI GCANNNNNTGC 2 cut(s) 1252, 1504
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 668
BstC8I GCNNGC 2 cut(s) 509, 1248
BstDEI CTNAG 4 cut(s) 80, 643, 842, 1153
BstF5I GGATG 5 cut(s) 6, 266, 292, 314, 1591
BstFNI CGCG 1 cut(s) 1083
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 9 cut(s) 153, 178, 218, 230, 320, 361, 952, 1078, 1232
BstMAI GTCTC 1 cut(s) 898
BstMBI GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
BstMWI GCNNNNNNNGC 3 cut(s) 1252, 1504, 1558
BstNI CCWGG 3 cut(s) 1066, 1199, 1554
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 5 cut(s) 501, 502, 1064, 1197, 1552
BstSFI CTRYAG 3 cut(s) 815, 1545, 1653
BstSNI TACGTA 1 cut(s) 668
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 3 cut(s) 473, 488, 1008
BstV2I GAAGAC 2 cut(s) 710, 1385
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 5, 340, 1185
BtgZI GCGATG 1 cut(s) 1064
BtsCI GGATG 5 cut(s) 6, 266, 292, 314, 1591
BtsIMutI CAGTG 1 cut(s) 795
BtuMI TCGCGA 1 cut(s) 1083
Cac8I GCNNGC 2 cut(s) 509, 1248
CaiI CAGNNNCTG 1 cut(s) 1553
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 1 cut(s) 1195
Cfr9I CCCGGG 1 cut(s) 502
CseI GACGC 1 cut(s) 968
Csp6I GTAC 3 cut(s) 623, 665, 1235
CviAII CATG 7 cut(s) 413, 512, 631, 797, 1499, 1592, 1786
CviQI GTAC 3 cut(s) 623, 665, 1235
DdeI CTNAG 4 cut(s) 80, 643, 842, 1153
DpnI GATC 9 cut(s) 152, 177, 217, 229, 319, 360, 951, 1077, 1231
DpnII GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
EaeI YGGCCR 2 cut(s) 3, 338
Eam1104I CTCTTC 3 cut(s) 40, 1103, 1506
EarI CTCTTC 3 cut(s) 40, 1103, 1506
Ecl136II GAGCTC 1 cut(s) 1096
Eco105I TACGTA 1 cut(s) 668
Eco130I CCWWGG 2 cut(s) 182, 304
Eco147I AGGCCT 1 cut(s) 1185
Eco24I GRGCYC 1 cut(s) 1098
Eco47I GGWCC 1 cut(s) 1195
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 1 cut(s) 1084
Eco88I CYCGRG 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 1096
EcoRII CCWGG 3 cut(s) 1064, 1197, 1552
EcoT14I CCWWGG 2 cut(s) 182, 304
EcoT22I ATGCAT 1 cut(s) 1500
EcoT38I GRGCYC 1 cut(s) 1098
ErhI CCWWGG 2 cut(s) 182, 304
FaeI CATG 7 cut(s) 416, 515, 634, 800, 1502, 1595, 1789
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FatI CATG 7 cut(s) 412, 511, 630, 796, 1498, 1591, 1785
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 3 cut(s) 462, 477, 997
FokI GGATG 4 cut(s) 253, 299, 321, 1598
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 3 cut(s) 462, 477, 997
FspBI CTAG 5 cut(s) 537, 806, 1256, 1403, 1508
GlaI GCGC 1 cut(s) 419
GluI GCNGC 3 cut(s) 462, 477, 997
HaeII RGCGCY 1 cut(s) 421
HaeIII GGCC 3 cut(s) 5, 340, 1185
HapII CCGG 2 cut(s) 503, 969
HgaI GACGC 1 cut(s) 968
HhaI GCGC 1 cut(s) 420
Hin1II CATG 7 cut(s) 416, 515, 634, 800, 1502, 1595, 1789
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HinfI GANTC 8 cut(s) 521, 540, 614, 838, 879, 1541, 1675, 1762
HpaII CCGG 2 cut(s) 503, 969
HphI GGTGA 1 cut(s) 1568
Hpy166II GTNNAC 4 cut(s) 623, 727, 1039, 1214
Hpy188III TCNNGA 8 cut(s) 607, 929, 1040, 1082, 1117, 1280, 1292, 1448
Hpy8I GTNNAC 4 cut(s) 623, 727, 1039, 1214
HpyAV CCTTC 9 cut(s) 218, 794, 869, 1079, 1123, 1196, 1277, 1400, 1625
HpyCH4III ACNGT 2 cut(s) 1734, 1792
HpyCH4IV ACGT 4 cut(s) 369, 667, 784, 1722
HpyCH4V TGCA 5 cut(s) 127, 407, 560, 1498, 1591
HpyF10VI GCNNNNNNNGC 3 cut(s) 1252, 1504, 1558
HpyF3I CTNAG 4 cut(s) 80, 643, 842, 1153
HpySE526I ACGT 4 cut(s) 369, 667, 784, 1722
Hsp92II CATG 7 cut(s) 416, 515, 634, 800, 1502, 1595, 1789
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
LguI GCTCTTC 1 cut(s) 1103
LmnI GCTCC 1 cut(s) 971
Lsp1109I GCAGC 3 cut(s) 473, 488, 1008
LweI GCATC 4 cut(s) 275, 505, 1585, 1638
MaeI CTAG 5 cut(s) 537, 806, 1256, 1403, 1508
MaeII ACGT 4 cut(s) 369, 667, 784, 1722
MaeIII GTNAC 2 cut(s) 1412, 1773
MalI GATC 9 cut(s) 152, 177, 217, 229, 319, 360, 951, 1077, 1231
MboI GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
MfeI CAATTG 4 cut(s) 11, 711, 735, 1107
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 976, 1098
MlsI TGGCCA 2 cut(s) 5, 340
MluNI TGGCCA 2 cut(s) 5, 340
MlyI GAGTC 1 cut(s) 1684
MmeI TCCRAC 1 cut(s) 1355
MnlI CCTC 9 cut(s) 37, 83, 88, 184, 280, 373, 391, 1358, 1472
Mox20I TGGCCA 2 cut(s) 5, 340
Mph1103I ATGCAT 1 cut(s) 1500
MroXI GAANNNNTTC 3 cut(s) 207, 294, 1287
MscI TGGCCA 2 cut(s) 5, 340
MseI TTAA 5 cut(s) 449, 546, 636, 923, 1707
MslI CAYNNNNRTG 4 cut(s) 516, 1219, 1221, 1584
Msp20I TGGCCA 2 cut(s) 5, 340
MspI CCGG 2 cut(s) 503, 969
MspR9I CCNGG 5 cut(s) 503, 504, 1066, 1199, 1554
MunI CAATTG 4 cut(s) 11, 711, 735, 1107
Mva1269I GAATGC 1 cut(s) 1287
MvaI CCWGG 3 cut(s) 1066, 1199, 1554
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 3 cut(s) 1252, 1504, 1558
NciI CCSGG 2 cut(s) 503, 504
NdeII GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
NlaIII CATG 7 cut(s) 416, 515, 634, 800, 1502, 1595, 1789
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 1412
NruI TCGCGA 1 cut(s) 1083
NsiI ATGCAT 1 cut(s) 1500
NspI RCATGY 1 cut(s) 634
PceI AGGCCT 1 cut(s) 1185
PciSI GCTCTTC 1 cut(s) 1103
PctI GAATGC 1 cut(s) 1287
PdmI GAANNNNTTC 3 cut(s) 207, 294, 1287
PfeI GAWTC 7 cut(s) 521, 540, 614, 838, 879, 1541, 1762
PkrI GCNGC 3 cut(s) 463, 478, 998
PleI GAGTC 1 cut(s) 1683
PpsI GAGTC 1 cut(s) 1683
Ppu21I YACGTR 1 cut(s) 668
PsiI TTATAA 2 cut(s) 1490, 1718
Psp124BI GAGCTC 1 cut(s) 1098
Psp1406I AACGTT 1 cut(s) 784
Psp6I CCWGG 3 cut(s) 1064, 1197, 1552
PspGI CCWGG 3 cut(s) 1064, 1197, 1552
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 1195
PstNI CAGNNNCTG 1 cut(s) 1553
PsuI RGATCY 1 cut(s) 358
RruI TCGCGA 1 cut(s) 1083
RsaI GTAC 3 cut(s) 624, 666, 1236
RsaNI GTAC 3 cut(s) 623, 665, 1235
RseI CAYNNNNRTG 4 cut(s) 516, 1219, 1221, 1584
SacI GAGCTC 1 cut(s) 1098
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 5 cut(s) 449, 546, 636, 923, 1707
SatI GCNGC 3 cut(s) 462, 477, 997
Sau3AI GATC 9 cut(s) 150, 175, 215, 227, 317, 358, 949, 1075, 1229
Sau96I GGNCC 1 cut(s) 1195
SchI GAGTC 1 cut(s) 1684
ScrFI CCNGG 5 cut(s) 503, 504, 1066, 1199, 1554
SduI GDGCHC 2 cut(s) 976, 1098
SfaNI GCATC 4 cut(s) 275, 505, 1585, 1638
SfcI CTRYAG 3 cut(s) 815, 1545, 1653
SinI GGWCC 1 cut(s) 1195
SmaI CCCGGG 1 cut(s) 504
SmiMI CAYNNNNRTG 4 cut(s) 516, 1219, 1221, 1584
SmlI CTYRAG 2 cut(s) 1179, 1672
SmoI CTYRAG 2 cut(s) 1179, 1672
SnaBI TACGTA 1 cut(s) 668
SseBI AGGCCT 1 cut(s) 1185
SsiI CCGC 4 cut(s) 507, 1417, 1771, 1795
SspMI CTAG 5 cut(s) 537, 806, 1256, 1403, 1508
SstI GAGCTC 1 cut(s) 1098
StuI AGGCCT 1 cut(s) 1185
StyD4I CCNGG 5 cut(s) 501, 502, 1064, 1197, 1552
StyI CCWWGG 2 cut(s) 182, 304
TaaI ACNGT 2 cut(s) 1734, 1792
TaiI ACGT 4 cut(s) 372, 670, 787, 1725
TaqI TCGA 1 cut(s) 1350
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 7 cut(s) 521, 540, 614, 838, 879, 1541, 1762
Tru1I TTAA 5 cut(s) 449, 546, 636, 923, 1707
Tru9I TTAA 5 cut(s) 449, 546, 636, 923, 1707
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 1412
TseI GCWGC 3 cut(s) 461, 476, 996
Tsp45I GTSAC 1 cut(s) 1412
TspDTI ATGAA 8 cut(s) 48, 151, 287, 303, 528, 534, 813, 888
TspGWI ACGGA 1 cut(s) 1179
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 1195
XapI RAATTY 6 cut(s) 133, 481, 527, 1128, 1478, 1710
XceI RCATGY 1 cut(s) 634
XmaI CCCGGG 1 cut(s) 502
XmnI GAANNNNTTC 3 cut(s) 207, 294, 1287
XspI CTAG 5 cut(s) 537, 806, 1256, 1403, 1508
Zsp2I ATGCAT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.