Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000183

Physical Location & Seq

Genomic Coordinates Reverse (-)

85426177 .. 85433134

Gene Structure 6958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTTCTTTCCTCTAAAGCCCCCACCGAAGTGGGGGTTGGAGCCCTAAACTCGAACACGGCAACCCGGCTGCACTCAATCGCGCCGTGTCCGACTCTCTCCGTGACTCCTTGTCTCCGTCTCCACCGTTTCGACTCTCTCCGTCCCCGACTCTCTGTCTTCTCCTCTCCTGTCTCCGTCTCCGAGCTCCGTCTTTACATTGAAGGCCTTGGTCATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAATATGGTGAAAACAATTTTTTCTGGACAACCACTTCCTACCAAACTGATGCTTAAGAACAATTGTATTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTGAAGTATAAGACTGAAACAAACTCTGTGATTCAGAATGTGGAGCATCCAAAGCTTGCTGCATTCATTAAGGAACATACTTGGGTGATGGAATCCGGAGAATATCTTACTTTTCCTCAAAACCAGTCCGAGGTAAAGGGTGGGGTTCTTCATTATATTGAGTCCATTGAAGAGGCGAGTTTCCTCATCATAGTGTTGGGGGAGTTTTGGGTCACCAAACTCAATGACAAAGATGGAGAGAACCCTATGCACCATGCGTATTATCCAAATGATAATATGATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

215

Amino Acids

23.97

Weight (kDa)

5.75

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	108 - 179	5.2e-09	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01440
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis	RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata	RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora	Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa	Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha	Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana	Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	33, 490
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	3 cut(s)	203, 253, 530
AhdI	GACNNNNNGTC	2 cut(s)	111, 155
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	187, 415
AluI	AGCT	2 cut(s)	187, 415
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	5 cut(s)	119, 125, 178, 184, 329
Aor13HI	TCCGGA	1 cut(s)	455
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	2 cut(s)	70, 419
AspLEI	GCGC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	271, 457, 565
BanII	GRGCYC	2 cut(s)	46, 189
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	57, 406
BccI	CCATC	3 cut(s)	442, 587, 634
BceAI	ACGGC	2 cut(s)	70, 75
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	5 cut(s)	119, 125, 178, 184, 329
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	71, 420
BlsI	GCNGC	2 cut(s)	72, 421
Bme1390I	CCNGG	1 cut(s)	67
BmeRI	GACNNNNNGTC	2 cut(s)	111, 155
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	3 cut(s)	291, 325, 415
BpiI	GAAGAC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	208, 489
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 490
Bse1I	ACTGG	1 cut(s)	484
BseAI	TCCGGA	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	208, 489
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	33, 490
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	57, 406
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	67, 456
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	33, 490
BsmAI	GTCTC	5 cut(s)	119, 125, 178, 184, 329
BsmBI	CGTCTC	2 cut(s)	125, 184
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	46, 189
Bsp13I	TCCGGA	1 cut(s)	455
BspANI	GGCC	1 cut(s)	207
BspEI	TCCGGA	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	208, 489
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	417
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	85
BstMAI	GTCTC	5 cut(s)	119, 125, 178, 184, 329
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 412
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	57, 406
BstV2I	GAAGAC	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	417
CfoI	GCGC	1 cut(s)	85
CviAII	CATG	2 cut(s)	215, 614
CviJI	RGCY	7 cut(s)	20, 44, 70, 187, 207, 246, 415
CviKI_1	RGCY	7 cut(s)	20, 44, 70, 187, 207, 246, 415
DriI	GACNNNNNGTC	2 cut(s)	111, 155
Eam1104I	CTCTTC	1 cut(s)	525
Eam1105I	GACNNNNNGTC	2 cut(s)	111, 155
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	207
Eco24I	GRGCYC	2 cut(s)	46, 189
Eco53kI	GAGCTC	1 cut(s)	187
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	46, 189
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	2 cut(s)	125, 184
FaeI	CATG	2 cut(s)	218, 617
FaiI	YATR	9 cut(s)	216, 257, 369, 438, 516, 551, 608, 615, 638
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	2 cut(s)	214, 613
Fnu4HI	GCNGC	2 cut(s)	71, 420
FokI	GGATG	1 cut(s)	393
FriOI	GRGCYC	2 cut(s)	46, 189
Fsp4HI	GCNGC	2 cut(s)	71, 420
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	71, 420
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	67, 456
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	218, 617
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	7 cut(s)	94, 106, 134, 150, 391, 452, 521
HpaII	CCGG	2 cut(s)	67, 456
HphI	GGTGA	3 cut(s)	271, 457, 565
Hpy188I	TCNGA	4 cut(s)	93, 184, 396, 490
Hpy188III	TCNNGA	3 cut(s)	276, 332, 456
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	73, 422, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 412
Hsp92II	CATG	2 cut(s)	218, 617
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	455
LmnI	GCTCC	4 cut(s)	41, 192, 334, 403
LpnPI	CCDG	6 cut(s)	80, 183, 261, 345, 469, 497
Lsp1109I	GCAGC	2 cut(s)	57, 406
LweI	GCATC	3 cut(s)	291, 325, 415
MaeIII	GTNAC	2 cut(s)	103, 571
MboII	GAAGA	5 cut(s)	151, 242, 245, 500, 542
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	46, 189
MluCI	AATT	3 cut(s)	240, 267, 313
MlyI	GAGTC	5 cut(s)	88, 100, 128, 144, 530
MmeI	TCCRAC	2 cut(s)	19, 116
MnlI	CCTC	7 cut(s)	22, 175, 353, 484, 486, 526, 554
MroI	TCCGGA	1 cut(s)	455
MseI	TTAA	3 cut(s)	306, 429, 646
MslI	CAYNNNNRTG	2 cut(s)	29, 551
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	67, 456
MspR9I	CCNGG	1 cut(s)	67
MunI	CAATTG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	422
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	335, 412
NciI	CCSGG	1 cut(s)	67
NlaIII	CATG	2 cut(s)	218, 617
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	103, 571
OliI	CACNNNNGTG	1 cut(s)	29
PceI	AGGCCT	1 cut(s)	207
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	391, 452
PkrI	GCNGC	2 cut(s)	72, 421
PleI	GAGTC	5 cut(s)	88, 100, 128, 144, 529
PpsI	GAGTC	5 cut(s)	88, 100, 128, 144, 529
Psp124BI	GAGCTC	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	43
RseI	CAYNNNNRTG	2 cut(s)	29, 551
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	3 cut(s)	306, 429, 646
SatI	GCNGC	2 cut(s)	71, 420
SchI	GAGTC	5 cut(s)	88, 100, 128, 144, 530
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	46, 189
SetI	ASST	4 cut(s)	189, 345, 417, 495
SfaNI	GCATC	3 cut(s)	291, 325, 415
SmiMI	CAYNNNNRTG	2 cut(s)	29, 551
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	240, 267, 313
SseBI	AGGCCT	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	53, 132
TasI	AATT	3 cut(s)	240, 267, 313
TfiI	GAWTC	2 cut(s)	391, 452
Tru1I	TTAA	3 cut(s)	306, 429, 646
Tru9I	TTAA	3 cut(s)	306, 429, 646
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	2 cut(s)	103, 571
TseI	GCWGC	2 cut(s)	70, 419
Tsp45I	GTSAC	2 cut(s)	103, 571
TspDTI	ATGAA	2 cut(s)	415, 500
TspGWI	ACGGA	5 cut(s)	91, 107, 131, 166, 179
TspRI	CASTG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.