Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000183

Physical Location & Seq

Genomic Coordinates Forward (+)

58124615 .. 58128655

Gene Structure 4041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGAGCTCCATCTCCGGAACTTGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAATTCTGCGGCTCTCCTAGTACTGCCAAACCCAAAGATGACGAGGCTGCTTGAGACGGAGATGAGTCCAGTTGTTGGAAGCATGTGGACGTGGCCGAGATGGCTTATGTTCAAAAAGGAGTTTGACAGCAGCTATGTGGGATTTATGAAGGATGGAGCCAAGTGGTTGGTGAAGAACACTGAAATCCTTCTTTGTATGCAGCCATCTCAAGAGGAGTTGAAGCACCTGAAGGTTTTGGGGTTGGCAGTGATTTACATAATGATGTTTGTATTGAATCTGTACGAGTACACGAAGAAGAACTTGGGGCCTCTGAGATCGATTGTGTGGACTGTGGAGGTTGCTATGATCAATATTGTTGCTCCAATCTACTGGAGATTCGAAGTTGCTATGATCAATATTGTTGCTCCAATCTACAGGAGATTCGAAGGAGTGCTTGATGATTTCCTTGGTTTACTCAACACGAAGCTTTGTGACTACAAAGATTTTAATGCTTTTGATATTATGATTGGCTCAAAGAATGGTTTTCTCATCTCAGATGGAGTATATAAGAACTCAATGCAAACCAGAGGATGGGAAGCTTCTTGCAATTGGTCACTTGATGGGGGATATCTTGCTATATGCAATGCTCTCACGTTGCTGTATGTACCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

249

Amino Acids

28.45

Weight (kDa)

8.86

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	100 - 158	5.4e-13	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01440
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis	RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata	RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora	Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa	Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha	Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana	Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	167, 663
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	4 cut(s)	114, 374, 380, 738
AfiI	CCNNNNNNNGG	4 cut(s)	24, 79, 167, 663
AgsI	TTSAA	4 cut(s)	59, 205, 313, 367
AjiI	CACGTC	1 cut(s)	183
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	5 cut(s)	9, 225, 559, 671, 744
AluI	AGCT	5 cut(s)	9, 225, 559, 671, 744
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	2 cut(s)	185, 398
ApeKI	GCWGC	3 cut(s)	139, 222, 292
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	16, 27, 274
AsuII	TTCGAA	2 cut(s)	471, 516
BanII	GRGCYC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	3 cut(s)	126, 234, 304
BccI	CCATC	8 cut(s)	20, 40, 186, 239, 304, 623, 657, 686
BclI	TGATCA	2 cut(s)	438, 483
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	4 cut(s)	102, 140, 223, 293
BlsI	GCNGC	4 cut(s)	103, 141, 224, 294
BmcAI	AGTACT	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	250, 399
BpmI	CTGGAG	1 cut(s)	484
Bpu14I	TTCGAA	2 cut(s)	471, 516
BpuEI	CTTGAG	2 cut(s)	164, 285
Bsa29I	ATCGAT	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 79, 167, 663
Bse1I	ACTGG	2 cut(s)	161, 467
Bse3DI	GCAATG	1 cut(s)	721
BseAI	TCCGGA	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	2 cut(s)	250, 668
BseLI	CCNNNNNNNGG	4 cut(s)	24, 79, 167, 663
BseMI	GCAATG	1 cut(s)	721
BseMII	CTCAG	2 cut(s)	395, 639
BseNI	ACTGG	2 cut(s)	161, 467
BseRI	GAGGAG	2 cut(s)	95, 320
BseXI	GCAGC	3 cut(s)	126, 234, 304
BshFI	GGCC	2 cut(s)	187, 400
BshVI	ATCGAT	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	4 cut(s)	24, 79, 167, 663
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	187, 400
Bsp119I	TTCGAA	2 cut(s)	471, 516
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	407, 438, 483
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	187, 400
BspCNI	CTCAG	2 cut(s)	396, 638
BspDI	ATCGAT	1 cut(s)	410
BspEI	TCCGGA	1 cut(s)	17
BspLI	GGNNCC	2 cut(s)	250, 399
BspT104I	TTCGAA	2 cut(s)	471, 516
BsrDI	GCAATG	1 cut(s)	721
BsrI	ACTGG	2 cut(s)	161, 467
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	407, 438, 483
BssT1I	CCWWGG	1 cut(s)	538
Bst4CI	ACNGT	1 cut(s)	424
BstBI	TTCGAA	2 cut(s)	471, 516
BstDEI	CTNAG	3 cut(s)	44, 404, 625
BstF5I	GGATG	2 cut(s)	250, 668
BstKTI	GATC	3 cut(s)	410, 441, 486
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	407, 438, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	126, 234, 304
BstXI	CCANNNNNNTGG	2 cut(s)	259, 462
Bsu15I	ATCGAT	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	187, 400
BsuTUI	ATCGAT	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	250, 668
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	270, 345
Cfr13I	GGNCC	1 cut(s)	398
ClaI	ATCGAT	1 cut(s)	410
Csp6I	GTAC	4 cut(s)	113, 373, 379, 737
CviAII	CATG	1 cut(s)	175
CviQI	GTAC	4 cut(s)	113, 373, 379, 737
DdeI	CTNAG	3 cut(s)	44, 404, 625
DpnI	GATC	3 cut(s)	409, 440, 485
DpnII	GATC	3 cut(s)	407, 438, 483
EaeI	YGGCCR	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	701
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	178
FalI	AAGNNNNNCTT	4 cut(s)	377, 409, 510, 542
FatI	CATG	1 cut(s)	174
FbaI	TGATCA	2 cut(s)	438, 483
Fnu4HI	GCNGC	4 cut(s)	102, 140, 223, 293
FokI	GGATG	2 cut(s)	257, 675
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	102, 140, 223, 293
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	4 cut(s)	102, 140, 223, 293
GsuI	CTGGAG	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	187, 400
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	557, 669
HinfI	GANTC	5 cut(s)	40, 157, 367, 468, 513
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	3 cut(s)	16, 27, 274
Hpy166II	GTNNAC	4 cut(s)	180, 381, 420, 545
Hpy188I	TCNGA	2 cut(s)	405, 628
Hpy188III	TCNNGA	2 cut(s)	18, 302
Hpy8I	GTNNAC	4 cut(s)	180, 381, 420, 545
HpyAV	CCTTC	4 cut(s)	235, 290, 316, 512
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	2 cut(s)	182, 725
HpyCH4V	TGCA	5 cut(s)	93, 292, 652, 678, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	44, 404, 625
HpySE526I	ACGT	2 cut(s)	182, 725
Hsp92II	CATG	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	17
Ksp22I	TGATCA	2 cut(s)	438, 483
Kzo9I	GATC	3 cut(s)	407, 438, 483
LmnI	GCTCC	4 cut(s)	14, 248, 457, 502
LpnPI	CCDG	6 cut(s)	31, 174, 332, 448, 493, 670
Lsp1109I	GCAGC	3 cut(s)	126, 234, 304
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	182, 725
MaeIII	GTNAC	2 cut(s)	563, 684
MalI	GATC	3 cut(s)	409, 440, 485
MboI	GATC	3 cut(s)	407, 438, 483
MboII	GAAGA	5 cut(s)	44, 47, 277, 397, 400
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	86, 94, 679
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	6 cut(s)	73, 129, 298, 411, 421, 653
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	679
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	3 cut(s)	407, 438, 483
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	250, 399
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	563, 684
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	2 cut(s)	471, 516
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	40, 367, 468, 513
PflMI	CCANNNNNTGG	2 cut(s)	167, 663
PkrI	GCNGC	4 cut(s)	103, 141, 224, 294
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	250, 399
PspPI	GGNCC	1 cut(s)	398
RsaI	GTAC	4 cut(s)	114, 374, 380, 738
RsaNI	GTAC	4 cut(s)	113, 373, 379, 737
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	4 cut(s)	102, 140, 223, 293
Sau3AI	GATC	3 cut(s)	407, 438, 483
Sau96I	GGNCC	1 cut(s)	398
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	1 cut(s)	166
SduI	GDGCHC	1 cut(s)	11
SfcI	CTRYAG	1 cut(s)	505
SfuI	TTCGAA	2 cut(s)	471, 516
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	143, 300
SmoI	CTYRAG	2 cut(s)	143, 300
Sse9I	AATT	3 cut(s)	86, 94, 679
SsiI	CCGC	1 cut(s)	101
SspI	AATATT	2 cut(s)	445, 490
SspMI	CTAG	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	2 cut(s)	185, 728
TaqI	TCGA	3 cut(s)	410, 471, 516
TasI	AATT	3 cut(s)	86, 94, 679
TatI	WGTACW	2 cut(s)	112, 378
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	40, 367, 468, 513
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	277, 345
TseFI	GTSAC	2 cut(s)	563, 684
TseI	GCWGC	3 cut(s)	139, 222, 292
Tsp45I	GTSAC	2 cut(s)	563, 684
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	277, 345
Van91I	CCANNNNNTGG	2 cut(s)	167, 663
XceI	RCATGY	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.