Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000183

Physical Location & Seq

Genomic Coordinates Forward (+)

78548257 .. 78551375

Gene Structure 3119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAGCTTCGTCTCCGGAAGATGGAAGCTATCACCAAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTACTGCCAAACCCAAAGATGACGAGGCTGCTTGAGACGGAGACAAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGATGGCTTATGTTCAAAAAGGAGTTTGACAGCAGCTATGTGGGATTTATGAAGGATGGAGCCAAGTGGTTGGTGAAGAACACTGAAATCCTTCTTTGTATGCAGCTATCTCAAGTGGCTGGATTTGTAAAATACAATAAGGAGTTGAAGCACCTGAAGGTTTTGGGGTTGGCAGTGATTTACATAATGATGTTTGTATTGAATCTGTACGAGTACACGAAGAAGAACTTGGGGCCTCTGAGATCGATTGTGTGGACTGTGGAGGTTGCTATGATCAATATTGTTGCTCCAATCTATTGGAGATTCGAAGTTGCTATGATCAATATTGTTGCTCCAATCTACCGGAGATTCGAAGGAGTGCCTGATGATTTCCTTGGTTTACTCGACACGAAGGTAATATGGGCCAATCATGTTCTTGCAATTAGGCTCGAGGCCTACTCTAGTAGTCTCCTCAGCCGAAATGGCAAGAGAGGTTTTGAAAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005811 GO:0006996 GO:0007275 GO:0008150 GO:0009555 GO:0009987 GO:0012505 GO:0016043 GO:0032501 GO:0032502 GO:0034389 GO:0040007 GO:0040008 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048229 GO:0048518 GO:0048583 GO:0048584 GO:0048589 GO:0048856 GO:0050789 GO:0065007 GO:0071840 GO:0080134 GO:0080186 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

REF

Protein Analysis

225

Amino Acids

25.97

Weight (kDa)

9.74

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
REF	PF05755	109 - 166	8e-13	Rubber elongation factor protein (REF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01440
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis	RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata	RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora	Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa	Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha	Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana	Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	101
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	2 cut(s)	99, 101
AcoI	YGGCCR	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	114, 398, 404
AfiI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
AgsI	TTSAA	5 cut(s)	59, 205, 337, 391, 668
AjiI	CACGTC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	4 cut(s)	9, 31, 225, 295
AluI	AGCT	4 cut(s)	9, 31, 225, 295
Alw26I	GTCTC	4 cut(s)	19, 140, 146, 641
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	617
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	4 cut(s)	185, 422, 591, 621
ApeKI	GCWGC	3 cut(s)	139, 222, 292
Asp700I	GAANNNNTTC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	422, 591
AsuHPI	GGTGA	3 cut(s)	16, 27, 274
AsuII	TTCGAA	2 cut(s)	495, 540
AvaI	CYCGRG	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	126, 234, 304
BccI	CCATC	3 cut(s)	18, 186, 239
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	462, 507
BcoDI	GTCTC	4 cut(s)	19, 140, 146, 641
BfaI	CTAG	1 cut(s)	630
BglI	GCCNNNNNGGC	2 cut(s)	193, 651
BisI	GCNGC	4 cut(s)	102, 140, 223, 293
BlsI	GCNGC	4 cut(s)	103, 141, 224, 294
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	617
BmgBI	CACGTC	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	422, 591
BmiI	GGNNCC	2 cut(s)	250, 423
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	611, 643
Bpu10I	CCTNAGC	1 cut(s)	641
Bpu14I	TTCGAA	2 cut(s)	495, 540
BpuEI	CTTGAG	2 cut(s)	164, 285
Bsa29I	ATCGAT	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	99, 562
BsaWI	WCCGGW	2 cut(s)	17, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 79, 167
Bse1I	ACTGG	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	99, 562
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BseMII	CTCAG	2 cut(s)	419, 655
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	2 cut(s)	95, 629
BseXI	GCAGC	3 cut(s)	126, 234, 304
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	4 cut(s)	187, 424, 593, 623
BshVI	ATCGAT	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	2 cut(s)	18, 532
BslI	CCNNNNNNNGG	3 cut(s)	24, 79, 167
BsmAI	GTCTC	4 cut(s)	19, 140, 146, 641
BsmBI	CGTCTC	2 cut(s)	19, 140
BsnI	GGCC	4 cut(s)	187, 424, 593, 623
BsoBI	CYCGRG	1 cut(s)	617
Bsp119I	TTCGAA	2 cut(s)	495, 540
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	431, 462, 507
BspACI	CCGC	2 cut(s)	99, 101
BspANI	GGCC	4 cut(s)	187, 424, 593, 623
BspCNI	CTCAG	2 cut(s)	420, 654
BspDI	ATCGAT	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	250, 423
BspT104I	TTCGAA	2 cut(s)	495, 540
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	99, 562
BssMI	GATC	3 cut(s)	431, 462, 507
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	448
BstBI	TTCGAA	2 cut(s)	495, 540
BstDEI	CTNAG	3 cut(s)	44, 428, 641
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	434, 465, 510
BstMAI	GTCTC	4 cut(s)	19, 140, 146, 641
BstMBI	GATC	3 cut(s)	431, 462, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 651
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	126, 234, 304
BstXI	CCANNNNNNTGG	2 cut(s)	259, 486
Bsu15I	ATCGAT	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	187, 424, 593, 623
BsuTUI	ATCGAT	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	270, 369
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	422, 591
Cfr42I	CCGCGG	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	113, 397, 403
CviAII	CATG	3 cut(s)	175, 599, 675
CviQI	GTAC	3 cut(s)	113, 397, 403
DdeI	CTNAG	3 cut(s)	44, 428, 641
DpnI	GATC	3 cut(s)	433, 464, 509
DpnII	GATC	3 cut(s)	431, 462, 507
EaeI	YGGCCR	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	562
Eco147I	AGGCCT	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	2 cut(s)	19, 140
FaeI	CATG	3 cut(s)	178, 602, 678
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	3 cut(s)	174, 598, 674
FbaI	TGATCA	2 cut(s)	462, 507
Fnu4HI	GCNGC	4 cut(s)	102, 140, 223, 293
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	4 cut(s)	102, 140, 223, 293
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	4 cut(s)	102, 140, 223, 293
HaeIII	GGCC	4 cut(s)	187, 424, 593, 623
HapII	CCGG	2 cut(s)	18, 532
Hin1II	CATG	3 cut(s)	178, 602, 678
HinfI	GANTC	3 cut(s)	391, 492, 537
HpaII	CCGG	2 cut(s)	18, 532
HphI	GGTGA	3 cut(s)	16, 27, 274
Hpy166II	GTNNAC	4 cut(s)	180, 405, 444, 569
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	4 cut(s)	180, 405, 444, 569
HpyAV	CCTTC	5 cut(s)	235, 290, 340, 536, 574
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	3 cut(s)	93, 292, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 651
HpyF3I	CTNAG	3 cut(s)	44, 428, 641
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	178, 602, 678
Kpn2I	TCCGGA	1 cut(s)	17
Ksp22I	TGATCA	2 cut(s)	462, 507
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	431, 462, 507
LmnI	GCTCC	3 cut(s)	248, 481, 526
LpnPI	CCDG	9 cut(s)	31, 95, 122, 153, 174, 294, 356, 545, 564
Lsp1109I	GCAGC	3 cut(s)	126, 234, 304
MaeI	CTAG	1 cut(s)	630
MaeII	ACGT	1 cut(s)	182
MalI	GATC	3 cut(s)	433, 464, 509
MboI	GATC	3 cut(s)	431, 462, 507
MboII	GAAGA	6 cut(s)	33, 44, 47, 277, 421, 424
MluCI	AATT	2 cut(s)	86, 609
MnlI	CCTC	7 cut(s)	73, 129, 435, 445, 613, 650, 653
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	18, 532
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	193, 651
NdeII	GATC	3 cut(s)	431, 462, 507
NlaIII	CATG	3 cut(s)	178, 602, 678
NlaIV	GGNNCC	2 cut(s)	250, 423
NmeAIII	GCCGAG	1 cut(s)	213
NspI	RCATGY	1 cut(s)	178
NspV	TTCGAA	2 cut(s)	495, 540
PaeR7I	CTCGAG	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	391, 492, 537
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	4 cut(s)	103, 141, 224, 294
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	250, 423
PspPI	GGNCC	2 cut(s)	422, 591
PspXI	VCTCGAGB	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	114, 398, 404
RsaNI	GTAC	3 cut(s)	113, 397, 403
RseI	CAYNNNNRTG	1 cut(s)	377
SacII	CCGCGG	1 cut(s)	102
SatI	GCNGC	4 cut(s)	102, 140, 223, 293
Sau3AI	GATC	3 cut(s)	431, 462, 507
Sau96I	GGNCC	2 cut(s)	422, 591
ScrFI	CCNGG	1 cut(s)	110
Sfr274I	CTCGAG	1 cut(s)	617
Sfr303I	CCGCGG	1 cut(s)	102
SfuI	TTCGAA	2 cut(s)	495, 540
SgrBI	CCGCGG	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	143, 300, 617
SmoI	CTYRAG	3 cut(s)	143, 300, 617
Sse9I	AATT	2 cut(s)	86, 609
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	2 cut(s)	99, 101
SspI	AATATT	2 cut(s)	469, 514
SspMI	CTAG	1 cut(s)	630
StuI	AGGCCT	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	5 cut(s)	434, 495, 540, 573, 618
TasI	AATT	2 cut(s)	86, 609
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	3 cut(s)	391, 492, 537
TscAI	CASTG	2 cut(s)	277, 369
TseI	GCWGC	3 cut(s)	139, 222, 292
TspDTI	ATGAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	277, 369
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.