Rh7AG267200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000183
Physical Location & Seq
Forward (+)
27760506 .. 27767166
6661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG267200.1

Sequence Viewer

Length: 288 bp
ATGATGGTGAGCTCCGTCTCTAGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATGCAGTTCCGCGGCTCTCCTGGTACTGCCAAACCCAAAGATGACGAGGCTGCTTGAGATGGAGACGAGCCCAGTTGCTGGAAGAATGTGGACGTGGCTGAGGTTAAAGTATGAAAGAAACCCGATTCCTTACAAGCCAAATGAAGTTTTGCCAATCAATCATCATAGAACAATGGATTCAAGACATTGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.32

Weight (kDa)

10.71

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 170
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 102, 104
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 82, 170
AgsI TTSAA 2 cut(s) 62, 273
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 22, 149
AlwNI CAGNNNCTG 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 142
AsuHPI GGTGA 2 cut(s) 19, 30
BanII GRGCYC 2 cut(s) 14, 164
Bbv12I GWGCWC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 21, 43, 145
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 2 cut(s) 22, 149
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 105, 143
BlsI GCNGC 2 cut(s) 106, 144
Bme1390I CCNGG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 170
Bse1I ACTGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 82, 170
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 82, 170
BsmAI GTCTC 2 cut(s) 22, 149
BsmBI CGTCTC 2 cut(s) 22, 149
Bsp1286I GDGCHC 2 cut(s) 14, 164
BspACI CCGC 2 cut(s) 102, 104
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 1 cut(s) 104
BsrI ACTGG 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 47, 191
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 22, 149
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 170
Cfr42I CCGCGG 1 cut(s) 105
Csp6I GTAC 1 cut(s) 116
CviJI RGCY 7 cut(s) 12, 34, 107, 142, 162, 190, 229
CviKI_1 RGCY 7 cut(s) 12, 34, 107, 142, 162, 190, 229
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 47, 191
Ecl136II GAGCTC 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 14, 164
Eco53kI GAGCTC 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 111
EcoT38I GRGCYC 2 cut(s) 14, 164
Esp3I CGTCTC 2 cut(s) 22, 149
FaiI YATR 3 cut(s) 94, 204, 258
Fnu4HI GCNGC 2 cut(s) 105, 143
FriOI GRGCYC 2 cut(s) 14, 164
Fsp4HI GCNGC 2 cut(s) 105, 143
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 105, 143
HinfI GANTC 3 cut(s) 43, 217, 269
HphI GGTGA 2 cut(s) 19, 30
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 21, 273
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 2 cut(s) 47, 191
HpySE526I ACGT 1 cut(s) 185
KspI CCGCGG 1 cut(s) 105
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 98, 125, 156, 177
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 185
MboII GAAGA 4 cut(s) 36, 47, 50, 186
MhlI GDGCHC 2 cut(s) 14, 164
MluCI AATT 1 cut(s) 89
MnlI CCTC 3 cut(s) 76, 132, 186
MseI TTAA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 104
PfeI GAWTC 3 cut(s) 43, 217, 269
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 2 cut(s) 106, 144
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 14
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 105, 143
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 2 cut(s) 14, 164
SetI ASST 4 cut(s) 14, 53, 188, 197
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 1 cut(s) 89
SsiI CCGC 2 cut(s) 102, 104
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 188
TasI AATT 1 cut(s) 89
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 3 cut(s) 43, 217, 269
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 219, 249
TspGWI ACGGA 1 cut(s) 4
Van91I CCANNNNNTGG 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 20
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.