Rh2DG665200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000183
Physical Location & Seq
Reverse (-)
89025090 .. 89025408
319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG665200.1

Sequence Viewer

Length: 204 bp
ATGGTGAGCTTCGTCTCCGGAAGATGGAAGCCATCACCGAATCTTAGGTTTCTTCTTCAATCCAAGAGAAACCCAAAGGAGGAGAAATTATACAGTTTCGCGGCTCTCCTGGTACTGCCAAACCTAAAGATGACGAGGCTGCTTGAGACAGAGACGAGCCCAGTTGCTGGAAGCATGTGGACGTGGCCGAGGTTTGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.74

Weight (kDa)

10.61

Isoelectric Point (pI)

63.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 167
AccII CGCG 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 17
AciI CCGC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 185
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 24, 79, 167, 194
AgsI TTSAA 1 cut(s) 59
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 19, 140, 146
AlwNI CAGNNNCTG 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 17
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 16, 27
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 18, 40
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 3 cut(s) 19, 140, 146
BisI GCNGC 2 cut(s) 102, 140
BlsI GCNGC 2 cut(s) 103, 141
Bme1390I CCNGG 1 cut(s) 110
BmgBI CACGTC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 79, 167, 194
Bse1I ACTGG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 17
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 4 cut(s) 24, 79, 167, 194
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 24, 79, 167, 194
BsmAI GTCTC 3 cut(s) 19, 140, 146
BsmBI CGTCTC 2 cut(s) 19, 146
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 17
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 17
BspFNI CGCG 1 cut(s) 101
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 101
BstMAI GTCTC 3 cut(s) 19, 140, 146
BstNI CCWGG 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 187
BtrI CACGTC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 167
Csp6I GTAC 1 cut(s) 113
CviAII CATG 1 cut(s) 175
CviJI RGCY 6 cut(s) 9, 31, 104, 139, 159, 187
CviKI_1 RGCY 6 cut(s) 9, 31, 104, 139, 159, 187
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 161
Esp3I CGTCTC 2 cut(s) 19, 146
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 91, 176
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 102, 140
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 102, 140
GluI GCNGC 2 cut(s) 102, 140
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 18
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 16, 27
Hpy166II GTNNAC 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 17
LpnPI CCDG 5 cut(s) 31, 95, 122, 153, 174
Lsp1109I GCAGC 1 cut(s) 126
MaeII ACGT 1 cut(s) 182
MboII GAAGA 3 cut(s) 33, 44, 47
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 1 cut(s) 86
MnlI CCTC 3 cut(s) 73, 129, 183
MroI TCCGGA 1 cut(s) 17
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 101
NlaIII CATG 1 cut(s) 178
NspI RCATGY 1 cut(s) 178
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 167
PkrI GCNGC 2 cut(s) 103, 141
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
SatI GCNGC 2 cut(s) 102, 140
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 161
SetI ASST 5 cut(s) 11, 50, 126, 185, 194
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 86
SsiI CCGC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 185
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 167
XceI RCATGY 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.