Rmu_sc0003160.1_g000003

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003160.1
Physical Location & Seq
Forward (+)
12855 .. 14347
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003160.1_g000003.1.cds

Sequence Viewer

Length: 711 bp
atgaggtatgctttcatcgagtacatgtgctcttctcctgatgctaacctcattagagatgtcagtgtgaagaataagactgaaacaaactctgttattgagccggcagaggggattgagtccatcagattgagagcattaatagatctttttgatgaaattatagacaaaccattttatgatcaactaaggacgaaggagcagctgggatatgttcagtgtgactggaaggtgatatccagtgtttttggcttttatttcatagttcagtcatcggagtacaacccaatctacttgcagcggagagttgacaactttatgaatggtctggaagacatattgcaaggattggatgatgcttcctttgagaattatagaggtgggctaatggcaaagctattggtgaaaaattcattctttataaatgaaaccgatcgattggaatcagattatccaggtaaaaggtatacatttgactatgcaaagagggtggcagaagagctcagcagtctacagaaggagcatgttgtcaacttttacaagacgtacttgcgacaatcatctcccaagcatcagagacttgccattcgtgtttggggttgcaaaactgacttgaaagaagctgcagaatcgcgacgggagtctgtgcagatcattgaagaccttgaagcctttaagatgtcatctgtgttctatcctaacggttgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

236

Amino Acids

27.57

Weight (kDa)

5.3

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01440
fragaria_vesca FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40370 FvH4_3g40410 FvH4_3g40410 FvH4_3g40411 FvH4_3g40412 FvH4_3g40413 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310 FvH4_5g00310
rosa_chinensis RchiOBHm_Chr1g0321501 RchiOBHm_Chr1g0334011 RchiOBHm_Chr1g0334041 RchiOBHm_Chr1g0335131 RchiOBHm_Chr2g0145491 RchiOBHm_Chr3g0492731 RchiOBHm_Chr5g0072791 RchiOBHm_Chr5g0072891 RchiOBHm_Chr5g0072931 RchiOBHm_Chr5g0072951 RchiOBHm_Chr5g0073041 RchiOBHm_Chr5g0073051 RchiOBHm_Chr5g0073061 RchiOBHm_Chr5g0073071 RchiOBHm_Chr5g0074151 RchiOBHm_Chr5g0074161 RchiOBHm_Chr7g0202261
rosa_laevigata RLG00000014828 RLG00000036342 RLG00000036343 RLG00000036346 RLG00000036350 RLG00000036353 RLG00000036355 RLG00000036356
rosa_multiflora Rmu_co8227831.1_g000001 Rmu_co8517625.1_g000001 Rmu_sc0001113.1_g000013 Rmu_sc0001394.1_g000005 Rmu_sc0002548.1_g000005 Rmu_sc0003160.1_g000003 Rmu_sc0003160.1_g000023 Rmu_sc0005069.1_g000004 Rmu_sc0005069.1_g000026 Rmu_sc0005592.1_g000031 Rmu_sc0005592.1_g000032 Rmu_sc0005592.1_g000033 Rmu_sc0007034.1_g000002 Rmu_sc0008926.1_g000001 Rmu_sc0008926.1_g000005 Rmu_sc0010523.1_g000004 Rmu_sc0010523.1_g000005 Rmu_sc0010900.1_g000006 Rmu_sc0010900.1_g000008 Rmu_sc0018267.1_g000001 Rmu_sc0040908.1_g000001
rosa_roxburghii Rroxscaffold_1G00008160 Rroxscaffold_1G00008170 Rroxscaffold_1G00008240 Rroxscaffold_1G00008250 Rroxscaffold_1G00008280 Rroxscaffold_1G00008290 Rroxscaffold_1G00008310 Rroxscaffold_1G00008340 Rroxscaffold_1G00008360 Rroxscaffold_2G00147720 Rroxscaffold_3G00254700 Rroxscaffold_5G00358330
rosa_rugosa Rorug01G0030700 Rorug03G0256700 Rorug03G0282500 Rorug04G0070500 Rorug05G0104700 Rorug05G0241200 Rorug05G0414700 Rorug05G0418900 Rorug05G0420400 Rorug05G0420500 Rorug05G0420500 Rorug05G0420700 Rorug05G0420800 Rorug05G0420900 Rorug06G0037800 Rorug07G0069500 Rorug07G0069600 Rorug07G0069600
rosa_samantha Rh2DG665200 Rh3AG306000 Rh3DG242400 Rh5AG458000 Rh5AG477100 Rh5AG477200 Rh5AG477400 Rh5AG477500 Rh5AG477600 Rh5AG487100 Rh5AG501000 Rh5BG497200 Rh5BG497400 Rh5BG497600 Rh5BG497700 Rh5BG498100 Rh5BG498200 Rh5BG498300 Rh5BG498400 Rh5CG521500 Rh5DG501800 Rh5DG509300 Rh5DG510000 Rh5DG510100 Rh5DG510400 Rh5DG520000 Rh6BG100200 Rh6BG523800 Rh6CG196600 Rh7AG255600 Rh7AG267200 Rh7DG203300
rosa_wichuraiana Rw1G031050 Rw5G044330 Rw5G044340 Rw5G044360 Rw5G044370 Rw5G046550 Rw7G017220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccI GTMKAC 2 cut(s) 467, 511
AccII CGCG 1 cut(s) 634
AciI CCGC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 3 cut(s) 23, 281, 548
AfiI CCNNNNNNNGG 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 616, 659, 668
AjnI CCWGG 1 cut(s) 454
AluBI AGCT 4 cut(s) 205, 397, 502, 623
AluI AGCT 4 cut(s) 205, 397, 502, 623
Alw21I GWGCWC 2 cut(s) 32, 504
Alw26I GTCTC 1 cut(s) 571
ApeKI GCWGC 3 cut(s) 202, 298, 623
ApoI RAATTY 1 cut(s) 409
ArsI GACNNNNNNTTYG 2 cut(s) 570, 602
AseI ATTAAT 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 244, 415
BanII GRGCYC 1 cut(s) 504
BbsI GAAGAC 2 cut(s) 339, 666
Bbv12I GWGCWC 2 cut(s) 32, 504
BbvI GCAGC 3 cut(s) 214, 310, 610
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 456
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 571
BfmI CTRYAG 2 cut(s) 512, 624
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 203, 299, 624
BlpI GCTNAGC 1 cut(s) 503
BlsI GCNGC 3 cut(s) 204, 300, 625
Bme1390I CCNGG 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 31, 346, 580
BoxI GACNNNNGTC 1 cut(s) 640
BpiI GAAGAC 2 cut(s) 339, 666
Bpu1102I GCTNAGC 1 cut(s) 503
Bsa29I ATCGAT 1 cut(s) 436
BsaBI GATNNNNATC 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 230, 240
Bse8I GATNNNNATC 1 cut(s) 442
BseBI CCWGG 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 436
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 442
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 517
BseNI ACTGG 2 cut(s) 230, 240
BseXI GCAGC 3 cut(s) 214, 310, 610
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 634
Bsh1285I CGRYCG 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 2 cut(s) 32, 504
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 571
Bsp1286I GDGCHC 2 cut(s) 32, 504
Bsp143I GATC 4 cut(s) 145, 181, 433, 651
Bsp1720I GCTNAGC 1 cut(s) 503
Bsp68I TCGCGA 1 cut(s) 634
BspACI CCGC 1 cut(s) 301
BspCNI CTCAG 1 cut(s) 516
BspDI ATCGAT 1 cut(s) 436
BspFNI CGCG 1 cut(s) 634
BspMAI CTGCAG 1 cut(s) 628
BspQI GCTCTTC 2 cut(s) 37, 492
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 2 cut(s) 230, 240
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 4 cut(s) 145, 181, 433, 651
BssNAI GTATAC 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 456
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 2 cut(s) 37, 492
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 188, 503
BstF5I GGATG 1 cut(s) 358
BstFNI CGCG 1 cut(s) 634
BstKTI GATC 4 cut(s) 148, 184, 436, 654
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 4 cut(s) 145, 181, 433, 651
BstMCI CGRYCG 1 cut(s) 436
BstNI CCWGG 1 cut(s) 456
BstNSI RCATGY 2 cut(s) 28, 527
BstPAI GACNNNNGTC 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 454
BstSFI CTRYAG 2 cut(s) 512, 624
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 3 cut(s) 214, 310, 610
BstV2I GAAGAC 2 cut(s) 339, 666
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 468
Bsu15I ATCGAT 1 cut(s) 436
BsuTUI ATCGAT 1 cut(s) 436
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 3 cut(s) 70, 224, 247
BtuMI TCGCGA 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 103
ClaI ATCGAT 1 cut(s) 436
Csp6I GTAC 3 cut(s) 22, 280, 547
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 2 cut(s) 25, 524
CviJI RGCY 8 cut(s) 103, 205, 252, 385, 397, 502, 623, 671
CviKI_1 RGCY 8 cut(s) 103, 205, 252, 385, 397, 502, 623, 671
CviQI GTAC 3 cut(s) 22, 280, 547
DdeI CTNAG 2 cut(s) 188, 503
DpnI GATC 4 cut(s) 147, 183, 435, 653
DpnII GATC 4 cut(s) 145, 181, 433, 651
Eam1104I CTCTTC 2 cut(s) 37, 492
EarI CTCTTC 2 cut(s) 37, 492
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 454
EcoRV GATATC 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 2 cut(s) 28, 527
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FatI CATG 2 cut(s) 24, 523
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 2 cut(s) 467, 511
Fnu4HI GCNGC 3 cut(s) 203, 299, 624
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 3 cut(s) 203, 299, 624
GluI GCNGC 3 cut(s) 203, 299, 624
GsaI CCCAGC 1 cut(s) 209
HapII CCGG 1 cut(s) 104
Hin1II CATG 2 cut(s) 28, 527
HincII GTYRAC 2 cut(s) 310, 532
HindII GTYRAC 2 cut(s) 310, 532
HinfI GANTC 4 cut(s) 119, 443, 629, 641
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 244, 415
Hpy166II GTNNAC 4 cut(s) 310, 468, 512, 532
Hpy188I TCNGA 4 cut(s) 128, 277, 448, 576
Hpy188III TCNNGA 3 cut(s) 38, 329, 633
Hpy8I GTNNAC 4 cut(s) 310, 468, 512, 532
Hpy99I CGWCG 1 cut(s) 639
HpyAV CCTTC 3 cut(s) 190, 223, 511
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 298, 343, 482, 603, 626, 649
HpyF3I CTNAG 2 cut(s) 188, 503
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 2 cut(s) 28, 527
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 4 cut(s) 145, 181, 433, 651
LguI GCTCTTC 2 cut(s) 37, 492
LmnI GCTCC 2 cut(s) 199, 520
LpnPI CCDG 8 cut(s) 51, 117, 191, 211, 253, 314, 441, 468
Lsp1109I GCAGC 3 cut(s) 214, 310, 610
LweI GCATC 3 cut(s) 31, 346, 580
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 221
MalI GATC 4 cut(s) 147, 183, 435, 653
MboI GATC 4 cut(s) 145, 181, 433, 651
MboII GAAGA 5 cut(s) 24, 82, 344, 509, 671
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 32, 504
MluCI AATT 3 cut(s) 159, 370, 409
MlyI GAGTC 2 cut(s) 128, 650
MnlI CCTC 4 cut(s) 59, 103, 371, 480
MroNI GCCGGC 1 cut(s) 103
MseI TTAA 2 cut(s) 140, 675
MspA1I CMGCKG 2 cut(s) 205, 301
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 456
MvnI CGCG 1 cut(s) 634
NaeI GCCGGC 1 cut(s) 105
NdeII GATC 4 cut(s) 145, 181, 433, 651
NgoMIV GCCGGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 28, 527
NmuCI GTSAC 1 cut(s) 221
NruI TCGCGA 1 cut(s) 634
NspI RCATGY 2 cut(s) 28, 527
PciI ACATGT 1 cut(s) 24
PciSI GCTCTTC 2 cut(s) 37, 492
PdiI GCCGGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 443, 629
PkrI GCNGC 3 cut(s) 204, 300, 625
Ple19I CGATCG 1 cut(s) 436
PleI GAGTC 2 cut(s) 127, 649
PpsI GAGTC 2 cut(s) 127, 649
PscI ACATGT 1 cut(s) 24
PshAI GACNNNNGTC 1 cut(s) 640
PshBI ATTAAT 1 cut(s) 140
PsiI TTATAA 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 454
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 454
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 145
PvuI CGATCG 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 205
RruI TCGCGA 1 cut(s) 634
RsaI GTAC 3 cut(s) 23, 281, 548
RsaNI GTAC 3 cut(s) 22, 280, 547
SacI GAGCTC 1 cut(s) 504
SapI GCTCTTC 2 cut(s) 37, 492
SaqAI TTAA 2 cut(s) 140, 675
SatI GCNGC 3 cut(s) 203, 299, 624
Sau3AI GATC 4 cut(s) 145, 181, 433, 651
SchI GAGTC 2 cut(s) 128, 650
ScrFI CCNGG 1 cut(s) 456
SduI GDGCHC 2 cut(s) 32, 504
SfaNI GCATC 3 cut(s) 31, 346, 580
SfcI CTRYAG 2 cut(s) 512, 624
Sse9I AATT 3 cut(s) 159, 370, 409
SsiI CCGC 1 cut(s) 301
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 18, 436
TasI AATT 3 cut(s) 159, 370, 409
TatI WGTACW 2 cut(s) 21, 279
TfiI GAWTC 2 cut(s) 443, 629
Tru1I TTAA 2 cut(s) 140, 675
Tru9I TTAA 2 cut(s) 140, 675
TscAI CASTG 3 cut(s) 70, 224, 247
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 202, 298, 623
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 6 cut(s) 4, 171, 250, 335, 402, 441
TspRI CASTG 3 cut(s) 70, 224, 247
VspI ATTAAT 1 cut(s) 140
XapI RAATTY 1 cut(s) 409
XceI RCATGY 2 cut(s) 28, 527
XmiI GTMKAC 2 cut(s) 467, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.