Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

15781817 .. 15786355

Gene Structure 4539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12100.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGCTGCAATGCTCCATCCTCATCCTCTGGTCATCTCAGCCACCCCAAGTTTCATAGCTCCCTCTAACCAAAACGAATCCAAACCCATCAACCCTTCCCCAACCGAGTCACTCAAAAACTGCAAAACCATAAACCAAGTGAAGCAACTTCACTGTCAAATCACCAAGAAAGGCCACAGTCACAGACCCTCCACTGTCACCAAGCTCATAATCACCTGCGCCGAAATAGGCACCCTCCAAAGCTTGGACTATGCCCGAAAAGCCCTCGACTTGTTTCTTGAACAACAAGAAACAAGGGGTGTGTTGTTCATGTACAACTCTCTGATAAGAGGCTACTCTAGTGCTGGGCTTGGTGACGAAGCCATTGGGCTCTACGTTCAGATGGTGGTTCAGGGAGTTTCGCCGGATAAGTTCACGTTTCCGTTTGCGTTGAGCGCATGCTCGAAGGTTGTGGCGTTTTGTGAAGGGGTTCAGCTCCATGGGTCGATTGTGAAGATGGGTTTGGAGGGTGATGTGTTTGTTGGGAACTCTTTGATTCATTTCTATGCGGAATGTGGGGAGATGGGTTATGCCCGGAAGGTGTTTGATGAAATGCGTGACAGAAACACCGTGTCGTGGACTAGTTTGATTTGTGGTTATGGGAGGAGGAGTATGCCCAAGGAGGCTGTTTCTTTGTTTTTCCAGATGGTGGGTAATGGGATTGAGCCGAATTCGGTGACGATGGTGTGTGTCATTTCGGCTTGTGCAAAGTTGAAGGATGTGGGGTTGAGTGAGAGAGTGTGTGATTATATTGGGGAGTCTGGGATGAAGAGTAACATGCTTATGGTGAATTCACTTGTTGACATGTATATGAAATGTGGGGATACTGGTACTGCAAAGCGGCTTTTTGACGAATGTGTGGATAAGAACTTGGTTCTTTACAATACAGTTTTGTCAAATTATGTGCGCCAGGGACTGCCTGGTGAAGCGGTTTCTGTGTTGGGTGAAATGCTGCGACAGGGCCCAAGACCTGACAGGGTTACCATATTATCTGCGATCTCAGCTTGCGGGCAACTAAGTGATTCTCTTTCTGGAAAGTGTTGTCATGGTTATGTTTTGAGGAATGGACTAGAAGGTTGGGATACTATTTGTAATGCCATGATTGACATGTACATGAAGTGCGGCCAACAAGAGACTGCCTGCAAAGTTTTTGACAATATGTCAAATAAGACTGTAGTATCACGCAACTCGTTGATTTCTGGTTTCATAAGAAGTGGTGATGTGACGTCAGCTTGGAAAATGTTCAATGAGATGCCAAAGAGTGATCTTGTCTCTTGGAACACTATGATTGGAGCTCTTGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTATTCCGGGTGATGCAGGCTGAGGGAATAAAAGGGGATAGAGTGACCATGGTGGAAGTTGCATCTGCCTGCGGATATTTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATCGAAAAAAACGATATCAACTGTGATACGCGGCTGGGGACAGCCTTAGTTGACATGTTCGCTAAATGTGGAGATCCTCAAAGTGCAATAAAGGTGTTCAATACCATGGCCAGAAGAGATGTTTCTGCTTGGACTGCAGCCATTGGAGCAATGGCGATGGAAGGAAATGGGGAACGAGCTCTAGAGCTTTTCGATCACATGCTTAAGCAAAGGGTGAAACTGGATGAAGTAGTCTTTGTGGCAATACTGACAGCATGCAGCCATGCTGGTCTTTTGGAACAAGGGCGGAACATTTTCGTGTCAATGCAGTCGGTCCATGGCATTACCCCTAATATCGTTCATTACGGGTGCATGGTCGACCTGCTAGGCCGAGCTGGGCTCTTGGAAGAAGCTGCTAATCTGATAAAGTGCATGCCTATTGAACCCAATGATGTCATTTGGGGTACTCTCTTGGCTGCGTGTCGAACCCACAAAAACGTCGAGATGGCAGCATATGCGGCTGAACAAATATCAAAGTTGAACCCTCAAAGAACTGGTAGTCAGGTGCTTCTGTCAAACATATATGCCTCAGCTGGGAAATGGGCTGATGTTGCAAAAGTGAGGTTAGAATTGAAAGAGAGAGGAATTCAAAAGGTACCCGGATGCAGTTCCATTGTAGTTAATGGAGTGATCCATGAGTTTACATCCGGGGGTGGTGATACTGATAAACACCTAGAGAAGAGCCACATTGAATTAATGTTGCAAGAATTAAACAGCAGACTCAGAGATGCTGGTCACATTCCTGATTTGGACAATGTCCTGCTTGATGTTGATGAGAAGGAGAAAGAGTACCTGCTCAGTCAACATGGTGAGAAAGTGGCCATCGCTTTTGGGCTTATAGGTACAGGGCAAGGAGTGCCAATTCGTGTTGTGAAGAATCTGAGAATGTGTTCTGATTGTCACTCTTTTGCCAAATTAGTGTCAAGAATATATGAGAGGGAAATTATTGTTCGAGACAACAACAGGTTCCACTTCTTTAATCAGGGGCTTTGCTCTTGCAGTGATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

847

Amino Acids

93.14

Weight (kDa)

6.42

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	103 - 149	1.2e-08	PPR repeat family
PPR	PF01535	103 - 133	1.5e-06	PPR repeat
PPR_2	PF13041	201 - 250	1.8e-11	PPR repeat family
PPR	PF01535	204 - 234	2.5e-07	PPR repeat
PPR_2	PF13041	303 - 349	2.4e-07	PPR repeat family
PPR_2	PF13041	404 - 434	1.6e-06	PPR repeat family
PPR_2	PF13041	435 - 474	2.3e-08	PPR repeat family
PPR	PF01535	437 - 467	2.3e-07	PPR repeat
PPR_2	PF13041	535 - 583	3.3e-06	PPR repeat family
PPR_long	PF17177	550 - 668	1.8e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	653 - 714	3e-20	E motif
DYW_deaminase	PF14432	754 - 846	5.6e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	1268
Acc36I	ACCTGC	3 cut(s)	224, 1857, 2328
Acc65I	GGTACC	1 cut(s)	2122
AccB1I	GGYRCC	2 cut(s)	230, 2122
AccB7I	CCANNNNNTGG	2 cut(s)	244, 688
AccI	GTMKAC	1 cut(s)	1845
AccII	CGCG	1 cut(s)	1519
AciI	CCGC	9 cut(s)	548, 880, 968, 1047, 1161, 1443, 1519, 1774, 1985
AclWI	GGATC	2 cut(s)	1556, 2152
AcoI	YGGCCR	3 cut(s)	1162, 1596, 2346
AcsI	RAATTY	3 cut(s)	709, 829, 2112
AcyI	GRCGYC	1 cut(s)	1265
AfaI	GTAC	7 cut(s)	314, 871, 1151, 1933, 2124, 2318, 2371
AfiI	CCNNNNNNNGG	4 cut(s)	244, 615, 688, 2061
AflII	CTTAAG	1 cut(s)	1691
AflIII	ACRYGT	3 cut(s)	843, 1146, 1542
AhdI	GACNNNNNGTC	1 cut(s)	1198
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	948, 958
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
Alw21I	GWGCWC	3 cut(s)	1336, 1459, 1669
Alw26I	GTCTC	3 cut(s)	1166, 1315, 2475
AlwI	GGATC	2 cut(s)	1556, 2152
AlwNI	CAGNNNCTG	1 cut(s)	955
AoxI	GGCC	6 cut(s)	172, 1000, 1162, 1596, 1855, 2346
ApaI	GGGCCC	1 cut(s)	1004
ApeKI	GCWGC	7 cut(s)	5, 991, 1625, 1746, 1880, 1943, 1976
ApoI	RAATTY	3 cut(s)	709, 829, 2112
AseI	ATTAAT	1 cut(s)	2222
Asp700I	GAANNNNTTC	4 cut(s)	468, 1280, 1781, 2416
Asp718I	GGTACC	1 cut(s)	2122
AspLEI	GCGC	3 cut(s)	221, 437, 948
AspS9I	GGNCC	3 cut(s)	1000, 1001, 1801
AsuC2I	CCSGG	4 cut(s)	574, 1379, 2127, 2176
AvaII	GGWCC	1 cut(s)	1801
BaeGI	GKGCMC	1 cut(s)	1004
BaeI	ACNNNNGTAYC	2 cut(s)	1200, 1233
BalI	TGGCCA	2 cut(s)	1598, 2348
BanI	GGYRCC	2 cut(s)	230, 2122
BanII	GRGCYC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
Bbv12I	GWGCWC	3 cut(s)	1336, 1459, 1669
BbvCI	CCTCAGC	2 cut(s)	1392, 2056
BbvI	GCAGC	6 cut(s)	978, 1637, 1758, 1867, 1930, 1988
BciT130I	CCWGG	2 cut(s)	950, 960
BciVI	GTATCC	2 cut(s)	856, 1114
BcnI	CCSGG	4 cut(s)	574, 1379, 2127, 2176
BcoDI	GTCTC	3 cut(s)	1166, 1315, 2475
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	6 cut(s)	339, 621, 1109, 1670, 1853, 2201
BfmI	CTRYAG	2 cut(s)	1212, 1623
BfrI	CTTAAG	1 cut(s)	1691
BfuAI	ACCTGC	3 cut(s)	224, 1857, 2328
BfuI	GTATCC	2 cut(s)	856, 1114
Bme1390I	CCNGG	6 cut(s)	574, 950, 960, 1379, 2127, 2176
Bme18I	GGWCC	1 cut(s)	1801
BmeRI	GACNNNNNGTC	1 cut(s)	1198
BmgT120I	GGNCC	3 cut(s)	1000, 1001, 1801
BmiI	GGNNCC	4 cut(s)	232, 1002, 2124, 2495
BmrFI	CCNGG	6 cut(s)	574, 950, 960, 1379, 2127, 2176
BmsI	GCATC	5 cut(s)	1281, 1374, 1442, 2120, 2245
BplI	GAGNNNNNCTC	2 cut(s)	1851, 1883
Bpu10I	CCTNAGC	2 cut(s)	1392, 2056
BpuMI	CCSGG	4 cut(s)	574, 1379, 2127, 2176
BsaHI	GRCGYC	1 cut(s)	1265
BsaJI	CCNNGG	7 cut(s)	478, 657, 949, 1419, 1593, 1804, 2175
BsaXI	ACNNNNNCTCC	8 cut(s)	173, 203, 634, 664, 1323, 1353, 2300, 2330
Bsc4I	CCNNNNNNNGG	4 cut(s)	244, 615, 688, 2061
Bse1I	ACTGG	4 cut(s)	871, 1713, 2026, 2540
Bse3DI	GCAATG	2 cut(s)	15, 1644
BseBI	CCWGG	2 cut(s)	950, 960
BseDI	CCNNGG	7 cut(s)	478, 657, 949, 1419, 1593, 1804, 2175
BseGI	GGATG	7 cut(s)	16, 22, 763, 810, 1717, 2135, 2171
BseLI	CCNNNNNNNGG	4 cut(s)	244, 615, 688, 2061
BseMI	GCAATG	2 cut(s)	15, 1644
BseMII	CTCAG	7 cut(s)	51, 1053, 1383, 2070, 2263, 2338, 2399
BseNI	ACTGG	4 cut(s)	871, 1713, 2026, 2540
BseRI	GAGGAG	2 cut(s)	658, 661
BseSI	GKGCMC	1 cut(s)	1004
BseXI	GCAGC	6 cut(s)	978, 1637, 1758, 1867, 1930, 1988
BseYI	CCCAGC	4 cut(s)	344, 1522, 1862, 2060
Bsh1236I	CGCG	1 cut(s)	1519
BshFI	GGCC	6 cut(s)	174, 1002, 1164, 1598, 1857, 2348
BshNI	GGYRCC	2 cut(s)	230, 2122
BsiHKAI	GWGCWC	3 cut(s)	1336, 1459, 1669
BsiSI	CCGG	5 cut(s)	404, 574, 1378, 2127, 2175
BslFI	GGGAC	2 cut(s)	966, 1540
BslI	CCNNNNNNNGG	4 cut(s)	244, 615, 688, 2061
BsmAI	GTCTC	3 cut(s)	1166, 1315, 2475
BsmFI	GGGAC	2 cut(s)	966, 1540
BsnI	GGCC	6 cut(s)	174, 1002, 1164, 1598, 1857, 2348
Bsp120I	GGGCCC	1 cut(s)	1000
Bsp1286I	GDGCHC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
Bsp1407I	TGTACA	2 cut(s)	312, 1149
Bsp143I	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
Bsp19I	CCATGG	4 cut(s)	478, 1419, 1593, 1804
BspACI	CCGC	9 cut(s)	548, 880, 968, 1047, 1161, 1443, 1519, 1774, 1985
BspANI	GGCC	6 cut(s)	174, 1002, 1164, 1598, 1857, 2348
BspCNI	CTCAG	7 cut(s)	50, 1052, 1384, 2069, 2262, 2337, 2400
BspFNI	CGCG	1 cut(s)	1519
BspLI	GGNNCC	4 cut(s)	232, 1002, 2124, 2495
BspMAI	CTGCAG	1 cut(s)	1627
BspMI	ACCTGC	3 cut(s)	224, 1857, 2328
BspPI	GGATC	2 cut(s)	1556, 2152
BspQI	GCTCTTC	1 cut(s)	2201
BspT107I	GGYRCC	2 cut(s)	230, 2122
BspTI	CTTAAG	1 cut(s)	1691
BsrDI	GCAATG	2 cut(s)	15, 1644
BsrGI	TGTACA	2 cut(s)	312, 1149
BsrI	ACTGG	4 cut(s)	871, 1713, 2026, 2540
BssECI	CCNNGG	7 cut(s)	478, 657, 949, 1419, 1593, 1804, 2175
BssMI	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
BssNI	GRCGYC	1 cut(s)	1265
BssT1I	CCWWGG	5 cut(s)	478, 657, 1419, 1593, 1804
Bst2UI	CCWGG	2 cut(s)	950, 960
Bst4CI	ACNGT	7 cut(s)	155, 179, 196, 610, 928, 1213, 1511
Bst6I	CTCTTC	3 cut(s)	803, 1597, 2201
BstACI	GRCGYC	1 cut(s)	1265
BstAFI	CTTAAG	1 cut(s)	1691
BstAPI	GCANNNNNTGC	2 cut(s)	1982, 2383
BstAUI	TGTACA	2 cut(s)	312, 1149
BstC8I	GCNNGC	8 cut(s)	439, 1045, 1049, 1180, 1389, 1441, 1744, 1901
BstDEI	CTNAG	9 cut(s)	37, 1039, 1055, 1392, 1534, 2056, 2249, 2324, 2408
BstDSI	CCRYGG	4 cut(s)	478, 1419, 1593, 1804
BstEII	GGTNACC	1 cut(s)	1018
BstF5I	GGATG	7 cut(s)	16, 22, 763, 810, 1717, 2135, 2171
BstFNI	CGCG	1 cut(s)	1519
BstHHI	GCGC	3 cut(s)	221, 437, 948
BstKTI	GATC	6 cut(s)	1038, 1306, 1465, 1564, 1684, 2160
BstMAI	GTCTC	3 cut(s)	1166, 1315, 2475
BstMBI	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
BstMWI	GCNNNNNNNGC	9 cut(s)	260, 434, 1040, 1622, 1634, 1982, 1985, 2078, 2383
BstNI	CCWGG	2 cut(s)	950, 960
BstNSI	RCATGY	8 cut(s)	441, 820, 847, 1150, 1546, 1690, 1746, 1903
BstPI	GGTNACC	1 cut(s)	1018
BstSCI	CCNGG	6 cut(s)	572, 948, 958, 1377, 2125, 2174
BstSFI	CTRYAG	2 cut(s)	1212, 1623
BstSLI	GKGCMC	1 cut(s)	1004
BstUI	CGCG	1 cut(s)	1519
BstV1I	GCAGC	6 cut(s)	978, 1637, 1758, 1867, 1930, 1988
BstX2I	RGATCY	1 cut(s)	1561
BstYI	RGATCY	1 cut(s)	1561
BsuI	GTATCC	2 cut(s)	856, 1114
BsuRI	GGCC	6 cut(s)	174, 1002, 1164, 1598, 1857, 2348
BtgI	CCRYGG	4 cut(s)	478, 1419, 1593, 1804
BtgZI	GCGATG	2 cut(s)	1658, 2335
BtsCI	GGATG	7 cut(s)	16, 22, 763, 810, 1717, 2135, 2171
BtsI	GCAGTG	1 cut(s)	2533
BtsIMutI	CAGTG	3 cut(s)	151, 192, 2533
BveI	ACCTGC	3 cut(s)	224, 1857, 2328
Cac8I	GCNNGC	8 cut(s)	439, 1045, 1049, 1180, 1389, 1441, 1744, 1901
CaiI	CAGNNNCTG	1 cut(s)	955
CfoI	GCGC	3 cut(s)	221, 437, 948
Cfr13I	GGNCC	3 cut(s)	1000, 1001, 1801
Csp6I	GTAC	7 cut(s)	313, 870, 1150, 1932, 2123, 2317, 2370
CviQI	GTAC	7 cut(s)	313, 870, 1150, 1932, 2123, 2317, 2370
DdeI	CTNAG	9 cut(s)	37, 1039, 1055, 1392, 1534, 2056, 2249, 2324, 2408
DpnI	GATC	6 cut(s)	1037, 1305, 1464, 1563, 1683, 2159
DpnII	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
DriI	GACNNNNNGTC	1 cut(s)	1198
EaeI	YGGCCR	3 cut(s)	1162, 1596, 2346
Eam1104I	CTCTTC	3 cut(s)	803, 1597, 2201
Eam1105I	GACNNNNNGTC	1 cut(s)	1198
EarI	CTCTTC	3 cut(s)	803, 1597, 2201
EciI	GGCGGA	1 cut(s)	1789
Ecl136II	GAGCTC	3 cut(s)	1334, 1457, 1667
Eco130I	CCWWGG	5 cut(s)	478, 657, 1419, 1593, 1804
Eco24I	GRGCYC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
Eco32I	GATATC	1 cut(s)	1504
Eco47I	GGWCC	1 cut(s)	1801
Eco53kI	GAGCTC	3 cut(s)	1334, 1457, 1667
Eco91I	GGTNACC	1 cut(s)	1018
EcoICRI	GAGCTC	3 cut(s)	1334, 1457, 1667
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	1018
EcoRI	GAATTC	3 cut(s)	709, 829, 2112
EcoRII	CCWGG	2 cut(s)	948, 958
EcoRV	GATATC	1 cut(s)	1504
EcoT14I	CCWWGG	5 cut(s)	478, 657, 1419, 1593, 1804
EcoT38I	GRGCYC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
ErhI	CCWWGG	5 cut(s)	478, 657, 1419, 1593, 1804
FaqI	GGGAC	2 cut(s)	966, 1540
FauI	CCCGC	1 cut(s)	1040
FauNDI	CATATG	1 cut(s)	1981
FblI	GTMKAC	1 cut(s)	1845
FokI	GGATG	7 cut(s)	3, 9, 770, 817, 1724, 2142, 2158
FriOI	GRGCYC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
FspBI	CTAG	6 cut(s)	339, 621, 1109, 1670, 1853, 2201
GlaI	GCGC	3 cut(s)	220, 436, 947
GsaI	CCCAGC	4 cut(s)	348, 1526, 1866, 2064
HaeIII	GGCC	6 cut(s)	174, 1002, 1164, 1598, 1857, 2348
HapII	CCGG	5 cut(s)	404, 574, 1378, 2127, 2175
HhaI	GCGC	3 cut(s)	221, 437, 948
Hin1I	GRCGYC	1 cut(s)	1265
Hin6I	GCGC	3 cut(s)	219, 435, 946
HinP1I	GCGC	3 cut(s)	219, 435, 946
HincII	GTYRAC	4 cut(s)	841, 1540, 1846, 2330
HindII	GTYRAC	4 cut(s)	841, 1540, 1846, 2330
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	8 cut(s)	77, 107, 535, 797, 1061, 1477, 2247, 2404
HpaII	CCGG	5 cut(s)	404, 574, 1378, 2127, 2175
Hpy166II	GTNNAC	8 cut(s)	414, 618, 841, 1476, 1540, 1846, 2169, 2330
Hpy188I	TCNGA	6 cut(s)	324, 381, 1890, 2252, 2409, 2422
Hpy188III	TCNNGA	9 cut(s)	278, 682, 1071, 1460, 1670, 1969, 2270, 2451, 2480
Hpy8I	GTNNAC	8 cut(s)	414, 618, 841, 1476, 1540, 1846, 2169, 2330
Hpy99I	CGWCG	1 cut(s)	1970
HpyAV	CCTTC	8 cut(s)	105, 439, 458, 571, 748, 1106, 1643, 2299
HpyCH4III	ACNGT	7 cut(s)	155, 179, 196, 610, 928, 1213, 1511
HpyCH4IV	ACGT	4 cut(s)	375, 416, 1265, 1965
HpyF10VI	GCNNNNNNNGC	9 cut(s)	260, 434, 1040, 1622, 1634, 1982, 1985, 2078, 2383
HpyF3I	CTNAG	9 cut(s)	37, 1039, 1055, 1392, 1534, 2056, 2249, 2324, 2408
HpySE526I	ACGT	4 cut(s)	375, 416, 1265, 1965
Hsp92I	GRCGYC	1 cut(s)	1265
HspAI	GCGC	3 cut(s)	219, 435, 946
KpnI	GGTACC	1 cut(s)	2126
Kzo9I	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
LguI	GCTCTTC	1 cut(s)	2201
LmnI	GCTCC	6 cut(s)	18, 64, 480, 1331, 1454, 1634
Lsp1109I	GCAGC	6 cut(s)	978, 1637, 1758, 1867, 1930, 1988
LweI	GCATC	5 cut(s)	1281, 1374, 1442, 2120, 2245
MaeI	CTAG	6 cut(s)	339, 621, 1109, 1670, 1853, 2201
MaeII	ACGT	4 cut(s)	375, 416, 1265, 1965
MalI	GATC	6 cut(s)	1037, 1305, 1464, 1563, 1683, 2159
MboI	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
MboII	GAAGA	6 cut(s)	505, 820, 1614, 1886, 2218, 2413
MfeI	CAATTG	1 cut(s)	1365
MflI	RGATCY	1 cut(s)	1561
MhlI	GDGCHC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
MlsI	TGGCCA	2 cut(s)	1598, 2348
MluNI	TGGCCA	2 cut(s)	1598, 2348
MlyI	GAGTC	4 cut(s)	116, 806, 1471, 2241
Mox20I	TGGCCA	2 cut(s)	1598, 2348
MroXI	GAANNNNTTC	4 cut(s)	468, 1280, 1781, 2416
MscI	TGGCCA	2 cut(s)	1598, 2348
MseI	TTAA	5 cut(s)	1692, 2148, 2222, 2237, 2505
MslI	CAYNNNNRTG	6 cut(s)	543, 821, 848, 1089, 1151, 1784
Msp20I	TGGCCA	2 cut(s)	1598, 2348
MspA1I	CMGCKG	1 cut(s)	2060
MspCI	CTTAAG	1 cut(s)	1691
MspI	CCGG	5 cut(s)	404, 574, 1378, 2127, 2175
MspR9I	CCNGG	6 cut(s)	574, 950, 960, 1379, 2127, 2176
MunI	CAATTG	1 cut(s)	1365
MvaI	CCWGG	2 cut(s)	950, 960
MvnI	CGCG	1 cut(s)	1519
MwoI	GCNNNNNNNGC	9 cut(s)	260, 434, 1040, 1622, 1634, 1982, 1985, 2078, 2383
NciI	CCSGG	4 cut(s)	574, 1379, 2127, 2176
NcoI	CCATGG	4 cut(s)	478, 1419, 1593, 1804
NdeI	CATATG	1 cut(s)	1981
NdeII	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
NlaIV	GGNNCC	4 cut(s)	232, 1002, 2124, 2495
NmeAIII	GCCGAG	1 cut(s)	1883
NspI	RCATGY	8 cut(s)	441, 820, 847, 1150, 1546, 1690, 1746, 1903
PaeI	GCATGC	3 cut(s)	441, 1746, 1903
PaqCI	CACCTGC	1 cut(s)	224
PciI	ACATGT	3 cut(s)	843, 1146, 1542
PciSI	GCTCTTC	1 cut(s)	2201
PcsI	WCGNNNNNNNCGW	1 cut(s)	1497
PdmI	GAANNNNTTC	4 cut(s)	468, 1280, 1781, 2416
PfeI	GAWTC	4 cut(s)	77, 535, 1061, 2404
PflFI	GACNNNGTC	1 cut(s)	2282
PflMI	CCANNNNNTGG	2 cut(s)	244, 688
PleI	GAGTC	4 cut(s)	115, 805, 1471, 2241
PpsI	GAGTC	4 cut(s)	115, 805, 1471, 2241
PscI	ACATGT	3 cut(s)	843, 1146, 1542
PshBI	ATTAAT	1 cut(s)	2222
Psp124BI	GAGCTC	3 cut(s)	1336, 1459, 1669
Psp6I	CCWGG	2 cut(s)	948, 958
PspEI	GGTNACC	1 cut(s)	1018
PspFI	CCCAGC	4 cut(s)	344, 1522, 1862, 2060
PspGI	CCWGG	2 cut(s)	948, 958
PspN4I	GGNNCC	4 cut(s)	232, 1002, 2124, 2495
PspOMI	GGGCCC	1 cut(s)	1000
PspPI	GGNCC	3 cut(s)	1000, 1001, 1801
PstI	CTGCAG	1 cut(s)	1627
PstNI	CAGNNNCTG	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	1561
PsyI	GACNNNGTC	1 cut(s)	2282
PvuII	CAGCTG	1 cut(s)	2060
RsaI	GTAC	7 cut(s)	314, 871, 1151, 1933, 2124, 2318, 2371
RsaNI	GTAC	7 cut(s)	313, 870, 1150, 1932, 2123, 2317, 2370
RseI	CAYNNNNRTG	6 cut(s)	543, 821, 848, 1089, 1151, 1784
SacI	GAGCTC	3 cut(s)	1336, 1459, 1669
SalI	GTCGAC	1 cut(s)	1844
SapI	GCTCTTC	1 cut(s)	2201
SaqAI	TTAA	5 cut(s)	1692, 2148, 2222, 2237, 2505
Sau3AI	GATC	6 cut(s)	1035, 1303, 1462, 1561, 1681, 2157
Sau96I	GGNCC	3 cut(s)	1000, 1001, 1801
SchI	GAGTC	4 cut(s)	116, 806, 1471, 2241
ScrFI	CCNGG	6 cut(s)	574, 950, 960, 1379, 2127, 2176
SduI	GDGCHC	6 cut(s)	372, 1004, 1336, 1459, 1669, 1869
SfaNI	GCATC	5 cut(s)	1281, 1374, 1442, 2120, 2245
SfcI	CTRYAG	2 cut(s)	1212, 1623
SinI	GGWCC	1 cut(s)	1801
SmiMI	CAYNNNNRTG	6 cut(s)	543, 821, 848, 1089, 1151, 1784
SmlI	CTYRAG	1 cut(s)	1691
SmoI	CTYRAG	1 cut(s)	1691
SpeI	ACTAGT	1 cut(s)	620
SphI	GCATGC	3 cut(s)	441, 1746, 1903
SsiI	CCGC	9 cut(s)	548, 880, 968, 1047, 1161, 1443, 1519, 1774, 1985
SspMI	CTAG	6 cut(s)	339, 621, 1109, 1670, 1853, 2201
SstI	GAGCTC	3 cut(s)	1336, 1459, 1669
StyD4I	CCNGG	6 cut(s)	572, 948, 958, 1377, 2125, 2174
StyI	CCWWGG	5 cut(s)	478, 657, 1419, 1593, 1804
TaaI	ACNGT	7 cut(s)	155, 179, 196, 610, 928, 1213, 1511
TaiI	ACGT	4 cut(s)	378, 419, 1268, 1968
TaqI	TCGA	9 cut(s)	267, 443, 485, 1491, 1680, 1845, 1951, 1968, 2479
TaqII	GACCGA	1 cut(s)	1789
TatI	WGTACW	2 cut(s)	312, 1149
TauI	GCSGC	4 cut(s)	883, 1164, 1522, 1988
TfiI	GAWTC	4 cut(s)	77, 535, 1061, 2404
Tru1I	TTAA	5 cut(s)	1692, 2148, 2222, 2237, 2505
Tru9I	TTAA	5 cut(s)	1692, 2148, 2222, 2237, 2505
TscAI	CASTG	3 cut(s)	158, 199, 2533
TseI	GCWGC	7 cut(s)	5, 991, 1625, 1746, 1880, 1943, 1976
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	3 cut(s)	158, 199, 2533
Tth111I	GACNNNGTC	1 cut(s)	2282
Van91I	CCANNNNNTGG	2 cut(s)	244, 688
Vha464I	CTTAAG	1 cut(s)	1691
VpaK11BI	GGWCC	1 cut(s)	1801
VspI	ATTAAT	1 cut(s)	2222
XapI	RAATTY	3 cut(s)	709, 829, 2112
XbaI	TCTAGA	1 cut(s)	1669
XceI	RCATGY	8 cut(s)	441, 820, 847, 1150, 1546, 1690, 1746, 1903
XcmI	CCANNNNNNNNNTGG	2 cut(s)	956, 1636
XmiI	GTMKAC	1 cut(s)	1845
XmnI	GAANNNNTTC	4 cut(s)	468, 1280, 1781, 2416
XspI	CTAG	6 cut(s)	339, 621, 1109, 1670, 1853, 2201
ZraI	GACGTC	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.