MD12G1181700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000589
Physical Location & Seq
Reverse (-)
26142947 .. 26143201
255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1181700.v1.1.491

Sequence Viewer

Length: 255 bp
ATGGTTTCAGCCTCGTTCGGGTTTCGCGTGTGGGAGGTTAGGGGATTTAGGGAGTGGGTGGTGGATAGATGGGTACATAACGGATATTGGCATTGGAGGCATGTGTTTGTTGCTACTTCTTTACTAGACATGTATGCCAAGTGCGGGATGGAGAAAGCGCGTTGTGTGTTCGATGGGATGCCGGAAAAGGATACGGTTTCTTGGGGTAACATGATTCAGGATATGCATCAAATGGGCTTCCTAAAGACGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 DYW_deaminase PLAC8 PPR PPR_2

Protein Analysis

85

Amino Acids

10.05

Weight (kDa)

7.86

Isoelectric Point (pI)

29.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22690 AT3G22690 AT3G22690
fragaria_vesca FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica Prupe.1G018800_v2.0.a1
pyrus_communis pycom07g16490
rosa_chinensis RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 27, 160
AciI CCGC 1 cut(s) 144
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 2 cut(s) 18, 144
AflIII ACRYGT 1 cut(s) 129
AspLEI GCGC 1 cut(s) 160
BccI CCATC 3 cut(s) 63, 142, 167
BciVI GTATCC 1 cut(s) 184
BfaI CTAG 1 cut(s) 125
BfuI GTATCC 1 cut(s) 184
BmsI GCATC 2 cut(s) 168, 235
BsaBI GATNNNNATC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 144
Bse8I GATNNNNATC 1 cut(s) 225
BseGI GGATG 2 cut(s) 153, 183
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 18, 144
Bsh1236I CGCG 2 cut(s) 27, 160
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 18, 144
BspACI CCGC 1 cut(s) 144
BspFNI CGCG 2 cut(s) 27, 160
Bst4CI ACNGT 1 cut(s) 196
BstF5I GGATG 2 cut(s) 153, 183
BstFNI CGCG 2 cut(s) 27, 160
BstHHI GCGC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 104, 133
BstUI CGCG 2 cut(s) 27, 160
BsuI GTATCC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 153, 183
CfoI GCGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 74
CviAII CATG 3 cut(s) 101, 130, 211
CviJI RGCY 2 cut(s) 11, 237
CviKI_1 RGCY 2 cut(s) 11, 237
CviQI GTAC 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 3 cut(s) 104, 133, 214
FaiI YATR 6 cut(s) 78, 102, 131, 135, 212, 224
FatI CATG 3 cut(s) 100, 129, 210
FauI CCCGC 1 cut(s) 137
FokI GGATG 2 cut(s) 160, 190
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 159
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 104, 133, 214
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 104, 133, 214
HspAI GCGC 1 cut(s) 158
LpnPI CCDG 2 cut(s) 195, 203
LweI GCATC 2 cut(s) 168, 235
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 206
MnlI CCTC 3 cut(s) 22, 28, 90
Mph1103I ATGCAT 1 cut(s) 228
MspI CCGG 1 cut(s) 182
MvnI CGCG 2 cut(s) 27, 160
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 104, 133, 214
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 2 cut(s) 104, 133
PciI ACATGT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 129
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SetI ASST 1 cut(s) 39
SfaNI GCATC 2 cut(s) 168, 235
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 171
TfiI GAWTC 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 96
XceI RCATGY 2 cut(s) 104, 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.