Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2166726 .. 2167560

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36013

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCTTGAGAACAATACTGTGTCGTGGACTAGTTTGATTTGTGGTCATGGGAGGAGGAATATGCCAAAGGAGGCTGTTTTCTTTGTTTTCGAGATGGTTGCTGCCGGGATTAAGCCCAATTTGGTGACAATGGTGTGCGTCATTTCTGCTTGTGCAAAGTTGAAGTATGCTTCGTTGAGTGCGAGGGTGTGTGCTTACATTGGGGAGTTTGGATTGAAGAGTAATATGCTTATGGTGAATTCACTTGTTGATGATATGTATATGAAATGTGGAGCTACTGATGCTGCAAAGCAGGTTTTTGATGATTGTGTAAAAAAGAACTTGGTTCTTTACAATACGATTTTGTCAAATTTTGTGCGCCAGGGACTTGCTAGTGAAGCAGTTTCAATCATGGGTGAAATGCTTCGACAGGGCCTAAGACCCGACAAGGTTACCATGTTATCTGCAATTTCAGCTTGTGCACAACTAAAGTGCTTATCTTTCTGGAAAGTGCTGCCATGGTTATGTTCTAAGGAATGGACTGTAAGGTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

178

Amino Acids

19.71

Weight (kDa)

9.0

Isoelectric Point (pI)

24.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 53	3e-09	PPR repeat family
PPR_2	PF13041	107 - 154	2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	238, 349
AgsI	TTSAA	3 cut(s)	163, 217, 387
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	275, 455
AluI	AGCT	2 cut(s)	275, 455
Alw21I	GWGCWC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	412
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	101, 284, 493
ApoI	RAATTY	2 cut(s)	238, 349
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	136, 247, 407
BaeGI	GKGCMC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	3 cut(s)	88, 271, 480
BccI	CCATC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	106
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	2 cut(s)	30, 372
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	3 cut(s)	102, 285, 494
BlsI	GCNGC	3 cut(s)	103, 286, 495
Bme1390I	CCNGG	2 cut(s)	106, 362
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	2 cut(s)	106, 362
BmsI	GCATC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	361, 497
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	361, 497
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	3 cut(s)	88, 271, 480
BshFI	GGCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	497
BspANI	GGCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	361, 497
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	2 cut(s)	19, 523
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	416, 510
BstDSI	CCRYGG	1 cut(s)	497
BstEII	GGTNACC	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 377, 452
BstNI	CCWGG	1 cut(s)	362
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	104, 360
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	88, 271, 480
BsuRI	GGCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	497
BveI	ACCTGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	1 cut(s)	127
CviAII	CATG	4 cut(s)	47, 391, 436, 498
CviJI	RGCY	5 cut(s)	74, 115, 275, 414, 455
CviKI_1	RGCY	5 cut(s)	74, 115, 275, 414, 455
DdeI	CTNAG	2 cut(s)	416, 510
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	497
FaeI	CATG	4 cut(s)	50, 394, 439, 501
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	4 cut(s)	46, 390, 435, 497
Fnu4HI	GCNGC	3 cut(s)	102, 285, 494
Fsp4HI	GCNGC	3 cut(s)	102, 285, 494
FspBI	CTAG	2 cut(s)	30, 372
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	102, 285, 494
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	50, 394, 439, 501
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	136, 247, 407
Hpy166II	GTNNAC	2 cut(s)	27, 461
Hpy188III	TCNNGA	2 cut(s)	91, 484
Hpy8I	GTNNAC	2 cut(s)	27, 461
HpyCH4III	ACNGT	2 cut(s)	19, 523
HpyCH4V	TGCA	4 cut(s)	155, 287, 446, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 377, 452
HpyF3I	CTNAG	2 cut(s)	416, 510
Hsp92II	CATG	4 cut(s)	50, 394, 439, 501
HspAI	GCGC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	6 cut(s)	118, 278, 347, 374, 395, 469
Lsp1109I	GCAGC	3 cut(s)	88, 271, 480
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	30, 372
MaeIII	GTNAC	2 cut(s)	124, 430
MboII	GAAGA	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	4 cut(s)	118, 238, 349, 447
MnlI	CCTC	4 cut(s)	45, 48, 64, 177
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	502
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	106, 362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	3 cut(s)	281, 377, 452
NciI	CCSGG	1 cut(s)	106
NcoI	CCATGG	1 cut(s)	497
NlaIII	CATG	4 cut(s)	50, 394, 439, 501
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	402
PkrI	GCNGC	3 cut(s)	103, 286, 495
Psp6I	CCWGG	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	102, 285, 494
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	2 cut(s)	106, 362
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	5 cut(s)	277, 297, 432, 457, 530
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	4 cut(s)	118, 238, 349, 447
SspMI	CTAG	2 cut(s)	30, 372
StyD4I	CCNGG	2 cut(s)	104, 360
StyI	CCWWGG	1 cut(s)	497
TaaI	ACNGT	2 cut(s)	19, 523
TaqI	TCGA	2 cut(s)	90, 406
TasI	AATT	4 cut(s)	118, 238, 349, 447
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	101, 284, 493
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	278
VneI	GTGCAC	1 cut(s)	459
XapI	RAATTY	2 cut(s)	238, 349
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	2 cut(s)	30, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.