Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

3245835 .. 3246011

Gene Structure 177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36132

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGGGTTTGGAGGAAAATGTGTTTATTGGGAATTCTTTGGTTCGTTTCTATGAAGAATGTAGGGACTTGGATCGTGCCTGGCAGTGTTTGATGAAATGCTTGAGAGAAACACTGTGTCGTGGACTTAGTTTGATTTGTGGTTATGGTAGGAGGAATATGCCAAAGGATCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

58

Amino Acids

6.8

Weight (kDa)

7.6

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	78, 161, 174
AcsI	RAATTY	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	77
AlwI	GGATC	3 cut(s)	78, 161, 174
ApoI	RAATTY	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	79
BfaI	CTAG	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	70, 166
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	78, 161, 174
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	2 cut(s)	70, 166
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	73, 169
BstMBI	GATC	2 cut(s)	70, 166
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	89, 110
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	72, 168
DpnII	GATC	2 cut(s)	70, 166
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	77
FaiI	YATR	3 cut(s)	51, 144, 158
FaqI	GGGAC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	114
HpyF3I	CTNAG	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	70, 166
LpnPI	CCDG	2 cut(s)	64, 91
MaeI	CTAG	1 cut(s)	175
MalI	GATC	2 cut(s)	72, 168
MboI	GATC	2 cut(s)	70, 166
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	2 cut(s)	4, 144
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	70, 166
NlaIV	GGNNCC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	166
Sau3AI	GATC	2 cut(s)	70, 166
ScrFI	CCNGG	1 cut(s)	79
SgeI	CNNG	6 cut(s)	79, 86, 90, 91, 112, 131
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	175
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	114
TasI	AATT	1 cut(s)	31
TscAI	CASTG	2 cut(s)	89, 117
TspDTI	ATGAA	2 cut(s)	66, 107
TspRI	CASTG	2 cut(s)	89, 117
XapI	RAATTY	1 cut(s)	31
XspI	CTAG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.