Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

51218316 .. 51218794

Gene Structure 479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029915

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAATGTGGGGACTTAGATTATGCCCTGAAGGTGTTTGATGAAATGCTTGAGAGAAATACTGTGTCGTGCAGTAGTTTGATTTGTGGTTATATGCCAAAGGAGGCTGTTTCTTTGTTTTTCGAGATGGTGGCTACCGGGATTAAACCCAATTCGGTGACTATGGTGTGTCTCATTTTTGCTTGCGCAAAGTTGAAGGATGTTGCGTTGAGTCAGAGGGTGTGTGCTTACATTCGGGAGTCTGGGCTGAAGAGTGATATGCTTATGGTGAAGACAGCCATTCGAGCAATGGCCATGCAAGGAAATGGGGAGCGAGCTCTAGAGCTTTTTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

113

Amino Acids

12.41

Weight (kDa)

5.16

Isoelectric Point (pI)

23.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	20 - 64	4.9e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	2 cut(s)	50, 269
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	2 cut(s)	317, 325
AluI	AGCT	2 cut(s)	317, 325
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	169, 280
BalI	TGGCCA	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	11, 294
BseGI	GGATG	1 cut(s)	205
BseMI	GCAATG	2 cut(s)	11, 294
BsgI	GTGCAG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	319
BspANI	GGCC	1 cut(s)	293
BsrDI	GCAATG	2 cut(s)	11, 294
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	184, 315
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	184, 315
CfoI	GCGC	1 cut(s)	188
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	7 cut(s)	107, 134, 247, 278, 293, 317, 325
CviKI_1	RGCY	7 cut(s)	107, 134, 247, 278, 293, 317, 325
DdeI	CTNAG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	2 cut(s)	50, 269
EcoICRI	GAGCTC	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	1 cut(s)	298
FaiI	YATR	7 cut(s)	24, 93, 95, 164, 260, 266, 296
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	294
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	320
FspI	TGCGCA	1 cut(s)	187
GlaI	GCGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	211, 239
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	169, 280
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	124, 236, 320
HpyAV	CCTTC	2 cut(s)	25, 190
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	4, 72, 298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	41, 151, 228
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	262, 283
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	1 cut(s)	151
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	220, 248
MnlI	CCTC	2 cut(s)	97, 210
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	144
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	139
NlaIII	CATG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	187
PleI	GAGTC	2 cut(s)	219, 247
PpsI	GAGTC	2 cut(s)	219, 247
Psp124BI	GAGCTC	1 cut(s)	319
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	144
SchI	GAGTC	2 cut(s)	220, 248
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	3 cut(s)	36, 319, 327
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	320
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	123, 283
TasI	AATT	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	57
XbaI	TCTAGA	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.