Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003413.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

350527 .. 352645

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003413.1_g000075.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcagaaaatccaaaggataggaggtaagagcggttttccacaaggtggatccctcaaacgtggtgacgcatttgctacacttgatcaatgcaaatacaaggacagcatggacatatggaaggcagctcttaaggaagcagcagatttgtctgaatggccttgcaaggatggcgagtggcttgtgaagatgggtttggaggaagatgtgtttattggggattctttgattcatttctatgcagagtgtggggacttggattatgcccagaaggtgtttgatgaaatgcttgaaaaatatactgtgtcgtggactagtttgatttgtggttatggtaggaggaatatgccaaaggagccgttttctttgcccaatttggtgactatggtgtgtgccatttcagcttgtgcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

5.19

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	33
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	45, 58
AdeI	CACNNNGTG	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	47
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	293
AhlI	ACTAGT	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	128, 404
AluI	AGCT	2 cut(s)	128, 404
AlwI	GGATC	2 cut(s)	45, 58
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	125, 140
AsuHPI	GGTGA	2 cut(s)	77, 391
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	137, 152
BccI	CCATC	2 cut(s)	164, 184
BceAI	ACGGC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	126, 141
BlsI	GCNGC	2 cut(s)	127, 142
BmiI	GGNNCC	2 cut(s)	52, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	137, 152
BshFI	GGCC	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	50, 85
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	52, 357
BspPI	GGATC	2 cut(s)	45, 58
BspTI	CTTAAG	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	33
BssMI	GATC	2 cut(s)	50, 85
Bst4CI	ACNGT	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	53, 88
BstMBI	GATC	2 cut(s)	50, 85
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 355, 401
BstV1I	GCAGC	2 cut(s)	137, 152
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	175
CseI	GACGC	1 cut(s)	77
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	128, 160, 181, 358, 404
CviKI_1	RGCY	5 cut(s)	128, 160, 181, 358, 404
DpnI	GATC	2 cut(s)	52, 87
DpnII	GATC	2 cut(s)	50, 85
DraIII	CACNNNGTG	1 cut(s)	47
FaeI	CATG	1 cut(s)	112
FaiI	YATR	9 cut(s)	110, 116, 118, 240, 264, 300, 333, 347, 386
FaqI	GGGAC	1 cut(s)	266
FatI	CATG	1 cut(s)	108
FauNDI	CATATG	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	126, 141
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	126, 141
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	2 cut(s)	126, 141
HaeIII	GGCC	1 cut(s)	160
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	2 cut(s)	221, 229
HphI	GGTGA	2 cut(s)	77, 391
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	115, 265
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	5 cut(s)	4, 93, 165, 242, 410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 355, 401
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	50, 85
LmnI	GCTCC	1 cut(s)	355
LpnPI	CCDG	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	137, 152
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	65, 379
MalI	GATC	2 cut(s)	52, 87
MbiI	CCGCTC	1 cut(s)	33
MboI	GATC	2 cut(s)	50, 85
MboII	GAAGA	2 cut(s)	199, 215
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	373
MnlI	CCTC	4 cut(s)	17, 65, 193, 333
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	171, 355, 401
NdeI	CATATG	1 cut(s)	116
NdeII	GATC	2 cut(s)	50, 85
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	2 cut(s)	52, 357
NmuCI	GTSAC	2 cut(s)	65, 379
PfeI	GAWTC	2 cut(s)	221, 229
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	127, 142
PspN4I	GGNNCC	2 cut(s)	52, 357
PsuI	RGATCY	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	126, 141
Sau3AI	GATC	2 cut(s)	50, 85
SetI	ASST	6 cut(s)	28, 49, 64, 130, 276, 406
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	64
TasI	AATT	1 cut(s)	373
TfiI	GAWTC	2 cut(s)	221, 229
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	2 cut(s)	65, 379
TseI	GCWGC	2 cut(s)	125, 140
Tsp45I	GTSAC	2 cut(s)	65, 379
TspDTI	ATGAA	2 cut(s)	221, 297
Van91I	CCANNNNNTGG	1 cut(s)	47
Vha464I	CTTAAG	1 cut(s)	131
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.