Rmu_sc0009161.1_g000006

Homocysteine s-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009161.1
OG0000589
Physical Location & Seq
Reverse (-)
39380 .. 43240
3861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009161.1_g000006.1.cds

Sequence Viewer

Length: 1284 bp
atgaaatggctatctccccagtccccgtgttccctgaccatcactcaactactagtccacagcttcaacaccaagacgaacctcataagcacatgcgccaaaatgggcaccttcgaaagcttacaccttgctcgaaaagccttcaacttgttccttgaagaagaagaagaaacaaagggtgtattgttgattgggaataatactctgattttctatgcggaatgcggggacttggattatgcccggaaggtgtttgatgaaatgcttgagagaaacgctgtgtcgtggactagtttgatttgtggtcatggtaggaggaacatgccaaaggaggctgttttctttgtttttcgagatggtgtggggactatagattttccatttagaaaggttacacaatctggccaagttggctacatgctgattgctgatctaactgaatttgagatgaccgccaatgagctagaaacaaagggtgccttctctaggcatcttcctgcaatccaaagcgaggcagaagcttgtagagcaggcttgcttgtggctattcaccagagttggagacatgttgaggtagaaagtgattgtgcacagttgcttgctgtgctgaatcttcaaggggaagataactctgaggaaaattgtagaattgcaattgaggcatgcgaaatttactatgacaaatgcaccaaaggttcttgggaaattgtggacacaggaaagccttcaagacatccagttctagttgcggcatctgtgggaagctgtggagcctatttggctgatggttccgagtatagtggcaactgtggcgatgcagtgactctagaagcattgaaagatttccacagggaaagggttcagattctggccaactatgttgctcatctaattgcatatgagacgacacccaataaattagaggcaaaggcatatgctgaacttcttgaggaggaagcattagatattccagcatggtttacttttgcttctaaagttggaatcagtgtggggctgatttcatatattcggaaggtaacaagcaaaccaataatgatataccccaacagtggtgagacctatgatggtcagagcaagcaatgggtgcatctggatataaatcatttgattcatggtataattcacaaagtattgttctttctgttcaccggtagattttacctatttaaaagttggaaggttaccagcaaacatacactgatataccttgatagtggcgagactcttctgatggtcagagcaagcaagggacgtgagatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00270 ko01100 ko01110 map00270 map01100 map01110
Pfam Domains
Protein Families
S-methyl_trans

Protein Analysis

427

Amino Acids

47.91

Weight (kDa)

5.73

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22690 AT3G22690 AT3G22690
fragaria_vesca FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica Prupe.1G018800_v2.0.a1
pyrus_communis pycom07g16490
rosa_chinensis RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 107, 476
AciI CCGC 4 cut(s) 218, 225, 453, 749
AcoI YGGCCR 2 cut(s) 403, 870
AcsI RAATTY 2 cut(s) 440, 669
AfiI CCNNNNNNNGG 3 cut(s) 486, 511, 1070
AflIII ACRYGT 1 cut(s) 565
AgeI ACCGGT 1 cut(s) 1169
AgsI TTSAA 6 cut(s) 67, 145, 158, 617, 729, 838
AhlI ACTAGT 2 cut(s) 52, 290
AjiI CACGTC 1 cut(s) 1274
AluBI AGCT 5 cut(s) 63, 120, 463, 521, 765
AluI AGCT 5 cut(s) 63, 120, 463, 521, 765
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 4 cut(s) 556, 896, 1070, 1235
Alw44I GTGCAC 1 cut(s) 588
AlwNI CAGNNNCTG 1 cut(s) 868
AoxI GGCC 2 cut(s) 403, 870
ApaLI GTGCAC 1 cut(s) 588
ApoI RAATTY 2 cut(s) 440, 669
AsiGI ACCGGT 1 cut(s) 1169
Asp700I GAANNNNTTC 3 cut(s) 724, 842, 858
AspLEI GCGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 542, 1085, 1159
AsuII TTCGAA 1 cut(s) 114
BaeGI GKGCMC 2 cut(s) 110, 592
BalI TGGCCA 2 cut(s) 405, 872
BanI GGYRCC 2 cut(s) 107, 476
Bbv12I GWGCWC 1 cut(s) 592
BccI CCATC 5 cut(s) 47, 350, 779, 1079, 1246
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 4 cut(s) 556, 896, 1070, 1235
BcuI ACTAGT 2 cut(s) 52, 290
BfaI CTAG 6 cut(s) 53, 291, 464, 486, 743, 827
BfmI CTRYAG 1 cut(s) 369
BglI GCCNNNNNGGC 2 cut(s) 411, 779
BglII AGATCT 1 cut(s) 1278
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
Bme1390I CCNGG 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 1274
BmiI GGNNCC 4 cut(s) 109, 478, 772, 790
BmrFI CCNGG 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 13
BmsI GCATC 4 cut(s) 499, 761, 805, 1117
BmuI ACTGGG 1 cut(s) 13
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 287, 968
BpuMI CCSGG 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 1119
BsaI GGTCTC 1 cut(s) 1070
BsaWI WCCGGW 1 cut(s) 1169
Bsc4I CCNNNNNNNGG 3 cut(s) 486, 511, 1070
Bse118I RCCGGY 1 cut(s) 1169
Bse1I ACTGG 2 cut(s) 19, 737
Bse3DI GCAATG 1 cut(s) 1106
Bse8I GATNNNNATC 1 cut(s) 1119
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 1119
BseLI CCNNNNNNNGG 3 cut(s) 486, 511, 1070
BseMI GCAATG 1 cut(s) 1106
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 19, 737
BseRI GAGGAG 1 cut(s) 965
BseSI GKGCMC 2 cut(s) 110, 592
BshFI GGCC 2 cut(s) 405, 872
BshNI GGYRCC 2 cut(s) 107, 476
BshTI ACCGGT 1 cut(s) 1169
BsiHKAI GWGCWC 1 cut(s) 592
BsiSI CCGG 2 cut(s) 244, 1170
BslFI GGGAC 3 cut(s) 7, 242, 379
BslI CCNNNNNNNGG 3 cut(s) 486, 511, 1070
BsmAI GTCTC 4 cut(s) 556, 896, 1070, 1235
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 3 cut(s) 7, 242, 379
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 2 cut(s) 405, 872
Bso31I GGTCTC 1 cut(s) 1070
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 110, 592
Bsp143I GATC 2 cut(s) 430, 1278
BspACI CCGC 4 cut(s) 218, 225, 453, 749
BspANI GGCC 2 cut(s) 405, 872
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 4 cut(s) 109, 478, 772, 790
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 2 cut(s) 107, 476
BspTNI GGTCTC 1 cut(s) 1070
BsrDI GCAATG 1 cut(s) 1106
BsrFI RCCGGY 1 cut(s) 1169
BsrI ACTGG 2 cut(s) 19, 737
BssAI RCCGGY 1 cut(s) 1169
BssMI GATC 2 cut(s) 430, 1278
Bst4CI ACNGT 3 cut(s) 594, 809, 1070
Bst6I CTCTTC 1 cut(s) 1251
BstAPI GCANNNNNTGC 1 cut(s) 1105
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 6 cut(s) 532, 536, 600, 664, 1097, 1264
BstDEI CTNAG 1 cut(s) 633
BstEII GGTNACC 1 cut(s) 1201
BstENI CCTNNNNNAGG 1 cut(s) 484
BstF5I GGATG 1 cut(s) 733
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 433, 1281
BstMAI GTCTC 4 cut(s) 556, 896, 1070, 1235
BstMBI GATC 2 cut(s) 430, 1278
BstMWI GCNNNNNNNGC 8 cut(s) 137, 411, 527, 604, 659, 779, 810, 1105
BstNSI RCATGY 5 cut(s) 96, 325, 421, 569, 666
BstPI GGTNACC 1 cut(s) 1201
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 369
BstSLI GKGCMC 2 cut(s) 110, 592
BstX2I RGATCY 1 cut(s) 1278
BstYI RGATCY 1 cut(s) 1278
BsuRI GGCC 2 cut(s) 405, 872
BtgZI GCGATG 1 cut(s) 828
BtrI CACGTC 1 cut(s) 1274
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 825
BtsIMutI CAGTG 4 cut(s) 825, 1012, 1075, 1217
Cac8I GCNNGC 6 cut(s) 532, 536, 600, 664, 1097, 1264
CaiI CAGNNNCTG 1 cut(s) 868
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 1169
CspAI ACCGGT 1 cut(s) 1169
CviAII CATG 8 cut(s) 93, 308, 322, 418, 566, 663, 975, 1133
DdeI CTNAG 1 cut(s) 633
DpnI GATC 2 cut(s) 432, 1280
DpnII GATC 2 cut(s) 430, 1278
DraI TTTAAA 1 cut(s) 1189
EaeI YGGCCR 2 cut(s) 403, 870
Eam1104I CTCTTC 1 cut(s) 1251
EarI CTCTTC 1 cut(s) 1251
Eco31I GGTCTC 1 cut(s) 1070
Eco91I GGTNACC 1 cut(s) 1201
EcoNI CCTNNNNNAGG 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 1201
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 8 cut(s) 96, 311, 325, 421, 569, 666, 978, 1136
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 3 cut(s) 7, 242, 379
FatI CATG 8 cut(s) 92, 307, 321, 417, 565, 662, 974, 1132
FauI CCCGC 1 cut(s) 218
FauNDI CATATG 2 cut(s) 898, 934
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 1 cut(s) 720
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 6 cut(s) 53, 291, 464, 486, 743, 827
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 750
HaeIII GGCC 2 cut(s) 405, 872
HapII CCGG 2 cut(s) 244, 1170
HhaI GCGC 1 cut(s) 98
Hin1II CATG 8 cut(s) 96, 311, 325, 421, 569, 666, 978, 1136
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HindIII AAGCTT 2 cut(s) 118, 519
HinfI GANTC 6 cut(s) 610, 823, 865, 1002, 1129, 1243
HpaII CCGG 2 cut(s) 244, 1170
HphI GGTGA 3 cut(s) 542, 1085, 1159
Hpy166II GTNNAC 6 cut(s) 58, 288, 590, 712, 981, 1167
Hpy188I TCNGA 8 cut(s) 207, 634, 793, 864, 1032, 1092, 1251, 1259
Hpy188III TCNNGA 5 cut(s) 353, 729, 827, 947, 1112
Hpy8I GTNNAC 6 cut(s) 58, 288, 590, 712, 981, 1167
HpyAV CCTTC 7 cut(s) 121, 151, 241, 490, 735, 1027, 1192
HpyCH4III ACNGT 3 cut(s) 594, 809, 1070
HpyCH4IV ACGT 1 cut(s) 1273
HpyCH4V TGCA 7 cut(s) 500, 590, 653, 687, 818, 896, 1108
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 411, 527, 604, 659, 779, 810, 1105
HpyF3I CTNAG 1 cut(s) 633
HpySE526I ACGT 1 cut(s) 1273
Hsp92II CATG 8 cut(s) 96, 311, 325, 421, 569, 666, 978, 1136
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 430, 1278
LmnI GCTCC 1 cut(s) 770
LweI GCATC 4 cut(s) 499, 761, 805, 1117
MaeI CTAG 6 cut(s) 53, 291, 464, 486, 743, 827
MaeII ACGT 1 cut(s) 1273
MaeIII GTNAC 4 cut(s) 391, 820, 1036, 1201
MalI GATC 2 cut(s) 432, 1280
MboI GATC 2 cut(s) 430, 1278
MboII GAAGA 8 cut(s) 170, 173, 176, 179, 485, 605, 635, 1238
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 1278
MhlI GDGCHC 2 cut(s) 110, 592
MlsI TGGCCA 2 cut(s) 405, 872
MluCI AATT 9 cut(s) 440, 640, 648, 654, 669, 705, 891, 917, 1140
MluNI TGGCCA 2 cut(s) 405, 872
MlyI GAGTC 2 cut(s) 817, 1237
MmeI TCCRAC 3 cut(s) 539, 979, 1175
Mox20I TGGCCA 2 cut(s) 405, 872
MroXI GAANNNNTTC 3 cut(s) 724, 842, 858
MscI TGGCCA 2 cut(s) 405, 872
MseI TTAA 1 cut(s) 1188
Msp20I TGGCCA 2 cut(s) 405, 872
MspI CCGG 2 cut(s) 244, 1170
MspR9I CCNGG 1 cut(s) 244
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 227
MwoI GCNNNNNNNGC 8 cut(s) 137, 411, 527, 604, 659, 779, 810, 1105
NciI CCSGG 1 cut(s) 244
NdeI CATATG 2 cut(s) 898, 934
NdeII GATC 2 cut(s) 430, 1278
NlaIII CATG 8 cut(s) 96, 311, 325, 421, 569, 666, 978, 1136
NlaIV GGNNCC 4 cut(s) 109, 478, 772, 790
NmuCI GTSAC 1 cut(s) 820
NspI RCATGY 5 cut(s) 96, 325, 421, 569, 666
NspV TTCGAA 1 cut(s) 114
PaeI GCATGC 1 cut(s) 666
PciI ACATGT 1 cut(s) 565
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 3 cut(s) 724, 842, 858
PfeI GAWTC 4 cut(s) 610, 865, 1002, 1129
PinAI ACCGGT 1 cut(s) 1169
PkrI GCNGC 1 cut(s) 751
PleI GAGTC 2 cut(s) 817, 1237
PpsI GAGTC 2 cut(s) 817, 1237
PscI ACATGT 1 cut(s) 565
PspEI GGTNACC 1 cut(s) 1201
PspN4I GGNNCC 4 cut(s) 109, 478, 772, 790
PstNI CAGNNNCTG 1 cut(s) 868
PsuI RGATCY 1 cut(s) 1278
SaqAI TTAA 1 cut(s) 1188
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 2 cut(s) 430, 1278
SchI GAGTC 2 cut(s) 817, 1237
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 2 cut(s) 110, 592
SfaNI GCATC 4 cut(s) 499, 761, 805, 1117
SfcI CTRYAG 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 266, 947
SmoI CTYRAG 2 cut(s) 266, 947
SpeI ACTAGT 2 cut(s) 52, 290
SphI GCATGC 1 cut(s) 666
Sse9I AATT 9 cut(s) 440, 640, 648, 654, 669, 705, 891, 917, 1140
SsiI CCGC 4 cut(s) 218, 225, 453, 749
SspMI CTAG 6 cut(s) 53, 291, 464, 486, 743, 827
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 3 cut(s) 594, 809, 1070
TaiI ACGT 1 cut(s) 1276
TaqI TCGA 3 cut(s) 114, 133, 352
TasI AATT 9 cut(s) 440, 640, 648, 654, 669, 705, 891, 917, 1140
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 4 cut(s) 610, 865, 1002, 1129
Tru1I TTAA 1 cut(s) 1188
Tru9I TTAA 1 cut(s) 1188
TscAI CASTG 4 cut(s) 825, 1012, 1075, 1224
TseFI GTSAC 1 cut(s) 820
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 4 cut(s) 17, 273, 1011, 1121
TspRI CASTG 4 cut(s) 825, 1012, 1075, 1224
VneI GTGCAC 1 cut(s) 588
XagI CCTNNNNNAGG 1 cut(s) 484
XapI RAATTY 2 cut(s) 440, 669
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 5 cut(s) 96, 325, 421, 569, 666
XmnI GAANNNNTTC 3 cut(s) 724, 842, 858
XspI CTAG 6 cut(s) 53, 291, 464, 486, 743, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.