Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

26373314 .. 26431219

Gene Structure 57906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCGTTTCGGCGTGAGAAAAGGTACATGGACTAAAGAGGAAGATGAACTTCTGAGACAGGTCATCGAAAAGCATGGAGAAGGAAAATGGCATCAGGTTCCTTTCAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTGAGGTGGATAAATTATTTGGAGCCAAATATCAAGAGAGGAGAGTTTACAGTTGATGAAGTTGATATGATCATCAGACTTCATAAGCTTCTAGGAAACAGGTGGTCTTTAATTGCTGGAAGACTACCGGGAAGAACAGCCAACGATGTAAAGAACTATTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGGCGCAAAAAAAATGAAAGATAAATCCCAAAAAAACACAATCGCCCCTTTGGTTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTGAATTTTTTGGAAAGAGATGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTTCCACTTCTTTACCAACAGCACCACCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCTGAAGACAGTACAGGAAGCGTTGATAGAACAACATGTTCTAGTCTTGGTTTAGAGGACGACTTCTTCACAAACTTCTGGGTTGAAGATATGGTACAATTGTCCAGTATAGATGGCCATGATCTAGTCAACAACTTCTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

235

Amino Acids

27.45

Weight (kDa)

9.2

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	8 - 55	7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	11 - 69	1.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	61 - 105	3.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	64 - 107	5.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	436, 484
AcuI	CTGAAG	2 cut(s)	327, 585
AfaI	GTAC	3 cut(s)	28, 574, 657
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	109, 436, 647
AluBI	AGCT	2 cut(s)	138, 232
AluI	AGCT	2 cut(s)	138, 232
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	676
ApoI	RAATTY	2 cut(s)	436, 484
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	273
BaeI	ACNNNNGTAYC	2 cut(s)	647, 680
BalI	TGGCCA	1 cut(s)	678
BarI	GAAGNNNNNNTAC	2 cut(s)	639, 671
BbsI	GAAGAC	2 cut(s)	271, 573
BccI	CCATC	1 cut(s)	668
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	4 cut(s)	236, 524, 603, 686
BfmI	CTRYAG	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	273
BmiI	GGNNCC	2 cut(s)	102, 168
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	103, 116, 442
BpiI	GAAGAC	2 cut(s)	271, 573
BpuMI	CCSGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	666
BseMII	CTCAG	2 cut(s)	47, 137
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	678
BsiSI	CCGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	678
Bsp143I	GATC	2 cut(s)	213, 682
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	48, 138
BspLI	GGNNCC	2 cut(s)	102, 168
BspQI	GCTCTTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	666
BssMI	GATC	2 cut(s)	213, 682
Bst4CI	ACNGT	2 cut(s)	196, 572
Bst6I	CTCTTC	2 cut(s)	128, 474
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	56, 146
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	216, 685
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	213, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	271, 573
BsuRI	GGCC	1 cut(s)	678
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	27, 573, 656
CviAII	CATG	5 cut(s)	30, 77, 597, 680, 705
CviJI	RGCY	6 cut(s)	117, 138, 169, 232, 284, 678
CviKI_1	RGCY	6 cut(s)	117, 138, 169, 232, 284, 678
CviQI	GTAC	3 cut(s)	27, 573, 656
DdeI	CTNAG	2 cut(s)	56, 146
DpnI	GATC	2 cut(s)	215, 684
DpnII	GATC	2 cut(s)	213, 682
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	128, 474
EarI	CTCTTC	2 cut(s)	128, 474
Eco57I	CTGAAG	2 cut(s)	327, 585
EcoRI	GAATTC	1 cut(s)	484
FaeI	CATG	5 cut(s)	33, 80, 600, 683, 708
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	5 cut(s)	29, 76, 596, 679, 704
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	142
FspBI	CTAG	4 cut(s)	236, 524, 603, 686
GlaI	GCGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	33, 80, 600, 683, 708
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	143, 192, 691
Hpy188I	TCNGA	4 cut(s)	57, 221, 478, 565
Hpy188III	TCNNGA	2 cut(s)	178, 524
Hpy8I	GTNNAC	3 cut(s)	143, 192, 691
HpyAV	CCTTC	2 cut(s)	77, 430
HpyCH4III	ACNGT	2 cut(s)	196, 572
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	2 cut(s)	56, 146
Hsp92II	CATG	5 cut(s)	33, 80, 600, 683, 708
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	213, 682
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	4, 166
LweI	GCATC	3 cut(s)	103, 116, 442
MaeI	CTAG	4 cut(s)	236, 524, 603, 686
MalI	GATC	2 cut(s)	215, 684
MboI	GATC	2 cut(s)	213, 682
MboII	GAAGA	9 cut(s)	56, 145, 276, 288, 480, 491, 578, 619, 659
MfeI	CAATTG	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
MluNI	TGGCCA	1 cut(s)	678
MnlI	CCTC	5 cut(s)	34, 141, 176, 417, 610
Mox20I	TGGCCA	1 cut(s)	678
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	119, 254
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
MunI	CAATTG	1 cut(s)	659
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	213, 682
NlaIII	CATG	5 cut(s)	33, 80, 600, 683, 708
NlaIV	GGNNCC	2 cut(s)	102, 168
NspI	RCATGY	1 cut(s)	600
PciI	ACATGT	1 cut(s)	596
PciSI	GCTCTTC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	102, 168
RsaI	GTAC	3 cut(s)	28, 574, 657
RsaNI	GTAC	3 cut(s)	27, 573, 656
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	119, 254
Sau3AI	GATC	2 cut(s)	213, 682
ScrFI	CCNGG	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	103, 116, 442
SfcI	CTRYAG	1 cut(s)	139
Sse9I	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
SspMI	CTAG	4 cut(s)	236, 524, 603, 686
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	196, 572
TaqI	TCGA	2 cut(s)	69, 409
TasI	AATT	8 cut(s)	157, 255, 436, 457, 484, 527, 540, 659
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	119, 254
Tru9I	TTAA	2 cut(s)	119, 254
TspDTI	ATGAA	6 cut(s)	63, 215, 216, 374, 412, 461
TspGWI	ACGGA	1 cut(s)	334
XapI	RAATTY	2 cut(s)	436, 484
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	1 cut(s)	600
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	4 cut(s)	236, 524, 603, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.