Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

63391378 .. 63391791

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTTGGAGGGATATGCCGAAGGAGGCTTTTTTCTTGTTTTTCGGGATGGTGGCTGCCGGGATTAAACCAATTCGGTGACTATGGTGTGTGTCATTTCTGCTTATGCAAAGTTGAAGCATGTAGCGTTGAGAGAGAGGCTTGTGCTTCCATTGGGGAGTCTGGATTGAAGAGTAATATTCTTATGTTGAATTCACTTGTTGATATGCATATGAAAAGTGGAGCTACTGATGCTGCAAAGCAGGTTTTTGATGAATGCGTGGATAAAAACTTGGTTCTTTACAATACAATTTTGTCAAATTCTGTGCGCCAGGGACTTGCTAGTGAAGCAGTTTCGGTCATGGGTGAAATGCTACAACAGGGCTTAAGACCCGACAAGGTTATGTGCCATATCAGCTTTTGCACAACTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

138

Amino Acids

15.04

Weight (kDa)

6.79

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	190, 298
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	3 cut(s)	116, 169, 190
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	2 cut(s)	224, 396
AluI	AGCT	2 cut(s)	224, 396
ApeKI	GCWGC	2 cut(s)	55, 233
ApoI	RAATTY	2 cut(s)	190, 298
AspLEI	GCGC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	89, 356
BbvI	GCAGC	2 cut(s)	42, 220
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	2 cut(s)	56, 234
BlsI	GCNGC	2 cut(s)	57, 235
Bme1390I	CCNGG	2 cut(s)	60, 311
BmrFI	CCNGG	2 cut(s)	60, 311
BmsI	GCATC	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	42, 220
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	260
BspMI	ACCTGC	1 cut(s)	232
BspTI	CTTAAG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	164
BstAFI	CTTAAG	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 326, 393
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	58, 309
BstV1I	GCAGC	2 cut(s)	42, 220
BtsCI	GGATG	1 cut(s)	53
BveI	ACCTGC	1 cut(s)	232
CfoI	GCGC	1 cut(s)	309
CviAII	CATG	2 cut(s)	120, 340
CviJI	RGCY	6 cut(s)	28, 55, 140, 224, 363, 396
CviKI_1	RGCY	6 cut(s)	28, 55, 140, 224, 363, 396
DdeI	CTNAG	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	210
FaeI	CATG	2 cut(s)	123, 343
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	2 cut(s)	119, 339
FauNDI	CATATG	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	56, 234
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	56, 234
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	2 cut(s)	56, 234
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	123, 343
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	89, 356
Hpy188III	TCNNGA	2 cut(s)	45, 162
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	108, 208, 236, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 326, 393
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	123, 343
HspAI	GCGC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	6 cut(s)	72, 147, 227, 296, 323, 344
Lsp1109I	GCAGC	2 cut(s)	42, 220
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	181
MluCI	AATT	4 cut(s)	71, 190, 288, 298
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	2 cut(s)	18, 130
Mph1103I	ATGCAT	1 cut(s)	210
MseI	TTAA	2 cut(s)	65, 365
MspCI	CTTAAG	1 cut(s)	364
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	60, 311
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	230, 326, 393
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	210
NlaIII	CATG	2 cut(s)	123, 343
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	1 cut(s)	123
PctI	GAATGC	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	57, 235
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	65, 365
SatI	GCNGC	2 cut(s)	56, 234
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	60, 311
SetI	ASST	4 cut(s)	226, 246, 381, 398
SfaNI	GCATC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	4 cut(s)	71, 190, 288, 298
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	58, 309
TaqII	GACCGA	1 cut(s)	325
TasI	AATT	4 cut(s)	71, 190, 288, 298
Tru1I	TTAA	2 cut(s)	65, 365
Tru9I	TTAA	2 cut(s)	65, 365
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	55, 233
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	227, 267
Vha464I	CTTAAG	1 cut(s)	364
XapI	RAATTY	2 cut(s)	190, 298
XceI	RCATGY	1 cut(s)	123
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.