Rh2AG312000

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000589
Physical Location & Seq
Reverse (-)
39840536 .. 39841502
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG312000.1

Sequence Viewer

Length: 444 bp
ATGAAGAACTCGGTGTCAGATTGCAGTTTTTACATTAACAGTGAAGAAGAAGATGATGAGAAGGACAAGAAAAGCATAGAAGATGGGAATGATTCTGATTCATCGCGCCATTTCACTGACTTTCTTTGGGCTCACATCTACGAAAGCTTCTCAACAGAAAAGAGAAGAAGAAATACCTGTGCTGTCTGTGCGGAGACAGTTAAATGGGTCGCATATGGGCCCTGTGGCCATCGAGAGGTCTGCTCTACCTGCATTTTTCGCCTCTGTTTCATCTATGGATCTGCCTGCGCAAGAGTGAATCTAAGATCATCTTTGTCACCAAGGTTAGGCATCAGTTGTAATCTAAGGCTTGCCATGCAACTCAATTTGTGTCCAAGCATGGAACTATCTACTACAAGACAAGCAATACATTCAGGAGCCGGCAGTTGTGGAGAAATGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

6.07

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000589)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22690 AT3G22690 AT3G22690
fragaria_vesca FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica Prupe.1G018800_v2.0.a1
pyrus_communis pycom07g16490
rosa_chinensis RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 257
AccII CGCG 1 cut(s) 106
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 226
AfiI CCNNNNNNNGG 2 cut(s) 235, 326
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 286
AoxI GGCC 2 cut(s) 218, 226
ApaI GGGCCC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 108, 290
AspS9I GGNCC 2 cut(s) 218, 219
AsuHPI GGTGA 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 228
BanII GRGCYC 2 cut(s) 133, 222
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BccI CCATC 2 cut(s) 77, 237
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BcoDI GTCTC 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 218, 219
BmiI GGNNCC 2 cut(s) 220, 418
BmsI GCATC 1 cut(s) 339
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BsaJI CCNNGG 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 326
Bse118I RCCGGY 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 2 cut(s) 235, 326
BseSI GKGCMC 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 220, 228
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 235, 326
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 2 cut(s) 220, 228
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 133, 222
Bsp143I GATC 2 cut(s) 278, 305
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 220, 228
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 220, 418
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 419
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 278, 305
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 41, 199
BstC8I GCNNGC 3 cut(s) 286, 351, 421
BstDEI CTNAG 2 cut(s) 302, 344
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 2 cut(s) 108, 290
BstKTI GATC 2 cut(s) 281, 308
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 278, 305
BstMWI GCNNNNNNNGC 4 cut(s) 188, 249, 258, 355
BstSLI GKGCMC 1 cut(s) 222
BstUI CGCG 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuRI GGCC 2 cut(s) 220, 228
BtgZI GCGATG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 46, 114
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 286, 351, 421
CfoI GCGC 2 cut(s) 108, 290
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 218, 219
CviAII CATG 2 cut(s) 355, 379
CviJI RGCY 6 cut(s) 131, 147, 220, 228, 349, 419
CviKI_1 RGCY 6 cut(s) 131, 147, 220, 228, 349, 419
DdeI CTNAG 2 cut(s) 302, 344
DpnI GATC 2 cut(s) 280, 307
DpnII GATC 2 cut(s) 278, 305
EaeI YGGCCR 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 2 cut(s) 133, 222
EcoO109I RGGNCCY 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 2 cut(s) 133, 222
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 358, 382
FaiI YATR 6 cut(s) 77, 214, 216, 276, 356, 380
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FatI CATG 2 cut(s) 354, 378
FauNDI CATATG 1 cut(s) 214
FriOI GRGCYC 2 cut(s) 133, 222
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 2 cut(s) 107, 289
HaeIII GGCC 2 cut(s) 220, 228
HapII CCGG 1 cut(s) 420
HhaI GCGC 2 cut(s) 108, 290
Hin1II CATG 2 cut(s) 358, 382
Hin6I GCGC 2 cut(s) 106, 288
HinP1I GCGC 2 cut(s) 106, 288
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 3 cut(s) 92, 98, 298
HpaII CCGG 1 cut(s) 420
HphI GGTGA 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 19, 97
Hpy188III TCNNGA 2 cut(s) 233, 414
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 2 cut(s) 41, 199
HpyCH4V TGCA 4 cut(s) 24, 252, 358, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 249, 258, 355
HpyF3I CTNAG 2 cut(s) 302, 344
Hsp92II CATG 2 cut(s) 358, 382
HspAI GCGC 2 cut(s) 106, 288
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Kzo9I GATC 2 cut(s) 278, 305
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 6 cut(s) 190, 235, 262, 298, 399, 433
LweI GCATC 1 cut(s) 339
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 280, 307
MboI GATC 2 cut(s) 278, 305
MboII GAAGA 7 cut(s) 16, 56, 59, 62, 92, 177, 180
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 133, 222
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 1 cut(s) 364
MluNI TGGCCA 1 cut(s) 228
MnlI CCTC 2 cut(s) 229, 272
Mox20I TGGCCA 1 cut(s) 228
MroNI GCCGGC 1 cut(s) 419
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 36, 201
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 1 cut(s) 420
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 4 cut(s) 188, 249, 258, 355
NaeI GCCGGC 1 cut(s) 421
NdeI CATATG 1 cut(s) 214
NdeII GATC 2 cut(s) 278, 305
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 2 cut(s) 358, 382
NlaIV GGNNCC 2 cut(s) 220, 418
NmuCI GTSAC 1 cut(s) 315
NsbI TGCGCA 1 cut(s) 289
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 92, 98, 298
PspN4I GGNNCC 2 cut(s) 220, 418
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 218, 219
PsuI RGATCY 1 cut(s) 278
SaqAI TTAA 2 cut(s) 36, 201
Sau3AI GATC 2 cut(s) 278, 305
Sau96I GGNCC 2 cut(s) 218, 219
SduI GDGCHC 2 cut(s) 133, 222
SetI ASST 5 cut(s) 149, 179, 240, 251, 326
SfaNI GCATC 1 cut(s) 339
Sse9I AATT 1 cut(s) 364
SsiI CCGC 1 cut(s) 191
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 41, 199
TaqI TCGA 1 cut(s) 232
TasI AATT 1 cut(s) 364
TfiI GAWTC 3 cut(s) 92, 98, 298
Tru1I TTAA 2 cut(s) 36, 201
Tru9I TTAA 2 cut(s) 36, 201
TscAI CASTG 2 cut(s) 46, 121
TseFI GTSAC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 17, 90, 259
TspRI CASTG 2 cut(s) 46, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.