Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

36993280 .. 36996164

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018820

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2394 bp

ATGGCCGCAATGCTTCAGGTGAGTCCTCTGGTCTCAGCCACCCCAAGTTTCATAGCTCCCACTAACCAAAACGAACCCAAAGCCATAGCCAAGGACACTTCCCCAACTGGGTCATTAAGAAACTGTAAAACCATAAACCAAGTGAAGCAACTTCACTGTCACATCACTAAGACAGGCCTCAGTCACACACCCTCTAATGTCACCAAGATAATTAGCACATGCGCCGAAATGGGCACCTTCGAAAGCTTAGATTATGCCCGGAAAGCCTTTAACTTGTTTCTTGAAGAAGAAGAAGAAGAAACAAAGGGTGTATTGTTCATGTATAATTCTCTGATAAGGGGTTACTCTAGTGCTGGGCTTTGTGACGAGGCAATTGGGCTTTATGTTCAGATGGTGCTTCAGGGTGTTTTGCCGGATAAGTTCACATTTCCGTTTGCACTGAGCGCGTGCTCAAAGATTGTGGCTTTCTGTGAAGGTGTTCAGCTGCACGGGTCGCTTGTGAAGATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAGTGTGGGCACTTGGATTATGCCCAGAAGGTGTTTGATGAAATGCTTGAGAGAAACATCGTGTCGTGGACTAGTTTGATTTGTGGCTATGGTAGGAGGAATATGCCAAAGCAGGCTGTTTCTTTGTTTTTCGAGATGGTGGCTGCCGGTGTTAAGCCCAATTCGGTGACTATGGTGTGCGTCATTTCAGCTTGTGCAAAGTTGAAGGATGTTGCGTTGAGTGAGAGAGTGTGTGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTTGTTGATATGTATATGAAATGTGGAGCTACTGATGCTGCAAAGAGGCTTTTTGATGAATGTACGGATAAAAACTTGGTTCTTTACAACACGATTTTGTCAAATTATGTGCGCCAGGGACTGGCTAGTGAAGCAGTTTCTATAGTGGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGTTACCATGTTAGCTGCAATTTCAGCCTGCGCACAGCTAAGTGATTCTCTCTCAGGTAAGTGTTGCCATGGGTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATTTGTAATGCCATGATTGACATGTACATGAAGTGCGGCCAACAAGAGCTGGCCTGCTTAATTTTTGACAATATGTCGAATAAGACTGTAGTATCATGGAACTCCTTGATTTCTGGTTTCATAAGAAGTGGCGATGTGAAGTCAGCTTGGGAAATTTTCAATGAGATGCCTAAGAGTGATCTCGTCTCGTGGAACACTATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTTTTCAGGGTGATGCAGACCGAGGGAATAAAAGGAGATAGGGTGACAATGGTGGAGGTTGCATCTGCCTGTGGATATTTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATTGAAAAAAATGAAATCAAATGTGATATGCGGCTTGGGACAGCCTTAGTTGACATGTTTGCTAAATGTGGTGATCCTCAAAGTGCAATGAAAGTGTTCAATACAATGGCAAGGAGAGATGTTTCTGCTTGGACTGCAGCCATCAGAGCAATGGCCATGGAGGGAAATGGGAAACGAGCTCTAGAACTTTTTGATGACATGCTTAAGCAAGGGGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGCATGCAGCCATGTTGGTCTTTTGGAACAAGGGCGGAACATTTTTGTGTCAATGCAGTTGGTCCATGGCATTTCCCCTCATATCGTTCATTATGGTTGCATGGTTGATCTACTAGGCCGAGCCGGGCTCTTGGAAGAAGCTGTTGATCTGATAAAGTGCATGCCAATGGAACCCAATGATGTCATTTGGGGCACTCTCTTGGCTGCTTGTCGAACCCACAAAAACGTCGAAATGGCAACTTATGCAGCTGAACAGATATCAAAGTTGACCACTCAGAGGACTGAGAGGAGCCACATTGCGTTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGTCACGTTCCTGATCTCGACAATGTCCTGGTTGATGTTGATGAGAAGGAGAAAGAGTACTTGCTTAGTCGACATAGTGAGAAAGTGGCCATAGCTTTTGGGCTTATAGGGGCAATATGCACAACCCATTATCTTCCATTGCCATTGTCCAAACTCATCAACTACTTGGCTGAGAAAACAAGCGTTGTATATCAGATCAATCAAGCCCTTGAGCCTGAAGCTGGAATCACAGGGGTTCACCTAGTATGCCAACAGAATGGATATGACCAACCGTACCCTTCCACTTCAGAGTTCCGACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

798

Amino Acids

87.94

Weight (kDa)

5.52

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	106 - 152	8.9e-08	PPR repeat family
PPR	PF01535	106 - 136	9.7e-07	PPR repeat
PPR_2	PF13041	204 - 253	2.9e-12	PPR repeat family
PPR	PF01535	207 - 237	9.1e-07	PPR repeat
PPR_2	PF13041	306 - 353	3.9e-08	PPR repeat family
PPR_2	PF13041	407 - 437	1.2e-08	PPR repeat family
PPR_1	PF12854	407 - 434	4.9e-06	PPR repeat
PPR	PF01535	409 - 438	1.1e-07	PPR repeat
PPR_2	PF13041	438 - 477	1.9e-08	PPR repeat family
PPR	PF01535	440 - 470	1.8e-07	PPR repeat
PPR_2	PF13041	538 - 586	5.7e-09	PPR repeat family
DYW_deaminase	PF14432	697 - 733	5.5e-08	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1057
AccB1I	GGYRCC	1 cut(s)	233
AccB7I	CCANNNNNTGG	1 cut(s)	964
AccI	GTMKAC	1 cut(s)	2158
AccII	CGCG	1 cut(s)	446
AciI	CCGC	4 cut(s)	6, 1170, 1528, 1783
AclWI	GGATC	1 cut(s)	1565
AcoI	YGGCCR	4 cut(s)	3, 1171, 1650, 2175
AcsI	RAATTY	3 cut(s)	535, 838, 1287
AcuI	CTGAAG	3 cut(s)	383, 2325, 2358
AfaI	GTAC	5 cut(s)	907, 1160, 1743, 2147, 2363
AfiI	CCNNNNNNNGG	4 cut(s)	108, 964, 2025, 2309
AflII	CTTAAG	1 cut(s)	1700
AflIII	ACRYGT	2 cut(s)	1155, 1551
AgsI	TTSAA	6 cut(s)	284, 763, 1294, 1379, 1502, 1597
AhdI	GACNNNNNGTC	1 cut(s)	1207
AhlI	ACTAGT	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	957, 2115
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
Alw21I	GWGCWC	4 cut(s)	452, 1345, 1468, 1678
Alw26I	GTCTC	2 cut(s)	37, 1324
AlwI	GGATC	1 cut(s)	1565
AlwNI	CAGNNNCTG	1 cut(s)	964
AoxI	GGCC	8 cut(s)	3, 175, 1009, 1171, 1185, 1650, 1864, 2175
ApeKI	GCWGC	8 cut(s)	484, 701, 881, 1040, 1634, 1755, 1952, 1994
ApoI	RAATTY	3 cut(s)	535, 838, 1287
Asp700I	GAANNNNTTC	2 cut(s)	477, 1592
AspLEI	GCGC	4 cut(s)	224, 446, 957, 1058
AspS9I	GGNCC	3 cut(s)	1009, 1348, 1810
AsuC2I	CCSGG	2 cut(s)	259, 1873
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	1348, 1810
BaeGI	GKGCMC	3 cut(s)	236, 570, 1943
BaeI	ACNNNNGTAYC	2 cut(s)	1209, 1242
BalI	TGGCCA	2 cut(s)	1652, 2177
BanI	GGYRCC	1 cut(s)	233
BanII	GRGCYC	3 cut(s)	1468, 1678, 1878
BauI	CACGAG	1 cut(s)	1321
Bbv12I	GWGCWC	4 cut(s)	452, 1345, 1468, 1678
BbvI	GCAGC	8 cut(s)	471, 688, 868, 1027, 1646, 1767, 1939, 2006
BccI	CCATC	4 cut(s)	385, 499, 688, 1646
BciT130I	CCWGG	2 cut(s)	959, 2117
BciVI	GTATCC	1 cut(s)	1123
BcnI	CCSGG	2 cut(s)	259, 1873
BcoDI	GTCTC	2 cut(s)	37, 1324
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	7 cut(s)	348, 630, 969, 1118, 1679, 1862, 2330
BfmI	CTRYAG	3 cut(s)	984, 1221, 1632
BfrI	CTTAAG	1 cut(s)	1700
BfuI	GTATCC	1 cut(s)	1123
BmcAI	AGTACT	2 cut(s)	1743, 2147
Bme1390I	CCNGG	4 cut(s)	259, 959, 1873, 2117
Bme18I	GGWCC	2 cut(s)	1348, 1810
BmeRI	GACNNNNNGTC	1 cut(s)	1207
BmgT120I	GGNCC	3 cut(s)	1009, 1348, 1810
BmiI	GGNNCC	3 cut(s)	235, 1920, 2039
BmrFI	CCNGG	4 cut(s)	259, 959, 1873, 2117
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	5 cut(s)	868, 1290, 1383, 1451, 2074
BmuI	ACTGGG	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	1860, 1892
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	3 cut(s)	626, 800, 2318
BpuMI	CCSGG	2 cut(s)	259, 1873
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	6 cut(s)	90, 958, 1093, 1401, 1653, 1813
BsaXI	ACNNNNNCTCC	4 cut(s)	1407, 1437, 2129, 2159
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 964, 2025, 2309
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	2 cut(s)	112, 969
Bse3DI	GCAATG	5 cut(s)	15, 1590, 1653, 2043, 2225
BseBI	CCWGG	2 cut(s)	959, 2117
BseDI	CCNNGG	6 cut(s)	90, 958, 1093, 1401, 1653, 1813
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	4 cut(s)	108, 964, 2025, 2309
BseMI	GCAATG	5 cut(s)	15, 1590, 1653, 2043, 2225
BseMII	CTCAG	8 cut(s)	48, 193, 431, 1092, 2022, 2036, 2092, 2250
BseNI	ACTGG	2 cut(s)	112, 969
BseRI	GAGGAG	1 cut(s)	2050
BseSI	GKGCMC	3 cut(s)	236, 570, 1943
BseXI	GCAGC	8 cut(s)	471, 688, 868, 1027, 1646, 1767, 1939, 2006
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	8 cut(s)	5, 177, 1011, 1173, 1187, 1652, 1866, 2177
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	4 cut(s)	452, 1345, 1468, 1678
BsiSI	CCGG	4 cut(s)	259, 413, 705, 1872
BslFI	GGGAC	2 cut(s)	975, 1549
BslI	CCNNNNNNNGG	4 cut(s)	108, 964, 2025, 2309
BsmAI	GTCTC	2 cut(s)	37, 1324
BsmBI	CGTCTC	1 cut(s)	1324
BsmFI	GGGAC	2 cut(s)	975, 1549
BsnI	GGCC	8 cut(s)	5, 177, 1011, 1173, 1187, 1652, 1866, 2177
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	8 cut(s)	236, 452, 570, 1345, 1468, 1678, 1878, 1943
Bsp1407I	TGTACA	1 cut(s)	1158
Bsp143I	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
Bsp19I	CCATGG	3 cut(s)	1093, 1653, 1813
BspACI	CCGC	4 cut(s)	6, 1170, 1528, 1783
BspANI	GGCC	8 cut(s)	5, 177, 1011, 1173, 1187, 1652, 1866, 2177
BspCNI	CTCAG	8 cut(s)	47, 192, 432, 1091, 2023, 2035, 2091, 2251
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	3 cut(s)	235, 1920, 2039
BspMAI	CTGCAG	1 cut(s)	1636
BspPI	GGATC	1 cut(s)	1565
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	1700
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	5 cut(s)	15, 1590, 1653, 2043, 2225
BsrFI	RCCGGY	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	1158
BsrI	ACTGG	2 cut(s)	112, 969
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	6 cut(s)	90, 958, 1093, 1401, 1653, 1813
BssMI	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
BssSI	CACGAG	1 cut(s)	1321
BssT1I	CCWWGG	4 cut(s)	90, 1093, 1653, 1813
Bst2BI	CACGAG	1 cut(s)	1321
Bst2UI	CCWGG	2 cut(s)	959, 2117
Bst4CI	ACNGT	4 cut(s)	125, 158, 1222, 2361
BstAFI	CTTAAG	1 cut(s)	1700
BstAPI	GCANNNNNTGC	1 cut(s)	1991
BstAUI	TGTACA	1 cut(s)	1158
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	7 cut(s)	448, 672, 1054, 1185, 1189, 1753, 1910
BstDSI	CCRYGG	3 cut(s)	1093, 1653, 1813
BstEII	GGTNACC	1 cut(s)	1027
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	4 cut(s)	224, 446, 957, 1058
BstKTI	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2104, 2286
BstMAI	GTCTC	2 cut(s)	37, 1324
BstMBI	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
BstMWI	GCNNNNNNNGC	9 cut(s)	263, 443, 493, 878, 974, 1049, 1631, 1643, 1991
BstNI	CCWGG	2 cut(s)	959, 2117
BstNSI	RCATGY	6 cut(s)	222, 1159, 1555, 1699, 1755, 1912
BstPI	GGTNACC	1 cut(s)	1027
BstSCI	CCNGG	4 cut(s)	257, 957, 1871, 2115
BstSFI	CTRYAG	3 cut(s)	984, 1221, 1632
BstSLI	GKGCMC	3 cut(s)	236, 570, 1943
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	8 cut(s)	471, 688, 868, 1027, 1646, 1767, 1939, 2006
BstXI	CCANNNNNNTGG	1 cut(s)	2345
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	8 cut(s)	5, 177, 1011, 1173, 1187, 1652, 1866, 2177
BtgI	CCRYGG	3 cut(s)	1093, 1653, 1813
BtgZI	GCGATG	1 cut(s)	1281
BtsCI	GGATG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	154, 437
Cac8I	GCNNGC	7 cut(s)	448, 672, 1054, 1185, 1189, 1753, 1910
CaiI	CAGNNNCTG	1 cut(s)	964
CfoI	GCGC	4 cut(s)	224, 446, 957, 1058
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	3 cut(s)	1009, 1348, 1810
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	5 cut(s)	906, 1159, 1742, 2146, 2362
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviQI	GTAC	5 cut(s)	906, 1159, 1742, 2146, 2362
DpnI	GATC	7 cut(s)	1314, 1473, 1572, 1857, 1896, 2103, 2285
DpnII	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
DriI	GACNNNNNGTC	1 cut(s)	1207
EaeI	YGGCCR	4 cut(s)	3, 1171, 1650, 2175
Eam1105I	GACNNNNNGTC	1 cut(s)	1207
EciI	GGCGGA	1 cut(s)	1798
Ecl136II	GAGCTC	2 cut(s)	1466, 1676
Eco130I	CCWWGG	4 cut(s)	90, 1093, 1653, 1813
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	3 cut(s)	1468, 1678, 1878
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	2007
Eco47I	GGWCC	2 cut(s)	1348, 1810
Eco53kI	GAGCTC	2 cut(s)	1466, 1676
Eco57I	CTGAAG	3 cut(s)	383, 2325, 2358
Eco91I	GGTNACC	1 cut(s)	1027
EcoICRI	GAGCTC	2 cut(s)	1466, 1676
EcoO109I	RGGNCCY	1 cut(s)	1009
EcoO65I	GGTNACC	1 cut(s)	1027
EcoRI	GAATTC	2 cut(s)	535, 838
EcoRII	CCWGG	2 cut(s)	957, 2115
EcoRV	GATATC	1 cut(s)	2007
EcoT14I	CCWWGG	4 cut(s)	90, 1093, 1653, 1813
EcoT38I	GRGCYC	3 cut(s)	1468, 1678, 1878
ErhI	CCWWGG	4 cut(s)	90, 1093, 1653, 1813
Esp3I	CGTCTC	1 cut(s)	1324
FaqI	GGGAC	2 cut(s)	975, 1549
FblI	GTMKAC	1 cut(s)	2158
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	3 cut(s)	1468, 1678, 1878
FspBI	CTAG	7 cut(s)	348, 630, 969, 1118, 1679, 1862, 2330
FspI	TGCGCA	1 cut(s)	1057
GlaI	GCGC	4 cut(s)	223, 445, 956, 1057
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	8 cut(s)	5, 177, 1011, 1173, 1187, 1652, 1866, 2177
HapII	CCGG	4 cut(s)	259, 413, 705, 1872
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	4 cut(s)	224, 446, 957, 1058
Hin6I	GCGC	4 cut(s)	222, 444, 955, 1056
HinP1I	GCGC	4 cut(s)	222, 444, 955, 1056
HincII	GTYRAC	3 cut(s)	1549, 2016, 2159
HindII	GTYRAC	3 cut(s)	1549, 2016, 2159
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	8 cut(s)	22, 544, 806, 813, 1070, 1486, 2076, 2313
HpaII	CCGG	4 cut(s)	259, 413, 705, 1872
Hpy166II	GTNNAC	7 cut(s)	423, 627, 1485, 1549, 2016, 2159, 2326
Hpy188I	TCNGA	9 cut(s)	333, 390, 1643, 1899, 2025, 2081, 2283, 2377, 2384
Hpy188III	TCNNGA	8 cut(s)	281, 691, 810, 817, 1469, 1679, 2099, 2105
Hpy8I	GTNNAC	7 cut(s)	423, 627, 1485, 1549, 2016, 2159, 2326
Hpy99I	CGWCG	1 cut(s)	1979
HpyAV	CCTTC	7 cut(s)	247, 467, 580, 757, 1115, 2128, 2376
HpyCH4III	ACNGT	4 cut(s)	125, 158, 1222, 2361
HpyCH4IV	ACGT	2 cut(s)	1974, 2094
HpyF10VI	GCNNNNNNNGC	9 cut(s)	263, 443, 493, 878, 974, 1049, 1631, 1643, 1991
HpySE526I	ACGT	2 cut(s)	1974, 2094
HspAI	GCGC	4 cut(s)	222, 444, 955, 1056
Kzo9I	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
LmnI	GCTCC	4 cut(s)	61, 869, 1463, 2037
Lsp1109I	GCAGC	8 cut(s)	471, 688, 868, 1027, 1646, 1767, 1939, 2006
LweI	GCATC	5 cut(s)	868, 1290, 1383, 1451, 2074
MaeI	CTAG	7 cut(s)	348, 630, 969, 1118, 1679, 1862, 2330
MaeII	ACGT	2 cut(s)	1974, 2094
MaeIII	GTNAC	9 cut(s)	158, 182, 199, 341, 362, 724, 1027, 1423, 2090
MalI	GATC	7 cut(s)	1314, 1473, 1572, 1857, 1896, 2103, 2285
MboI	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
MboII	GAAGA	9 cut(s)	296, 299, 302, 305, 308, 514, 530, 1895, 2213
MfeI	CAATTG	2 cut(s)	372, 1374
MhlI	GDGCHC	8 cut(s)	236, 452, 570, 1345, 1468, 1678, 1878, 1943
MlsI	TGGCCA	2 cut(s)	1652, 2177
MluNI	TGGCCA	2 cut(s)	1652, 2177
MlyI	GAGTC	5 cut(s)	31, 807, 815, 1480, 2070
Mox20I	TGGCCA	2 cut(s)	1652, 2177
MroXI	GAANNNNTTC	2 cut(s)	477, 1592
MscI	TGGCCA	2 cut(s)	1652, 2177
MseI	TTAA	5 cut(s)	116, 270, 711, 1193, 1701
MslI	CAYNNNNRTG	5 cut(s)	552, 1098, 1160, 1793, 1913
Msp20I	TGGCCA	2 cut(s)	1652, 2177
MspA1I	CMGCKG	2 cut(s)	484, 1997
MspCI	CTTAAG	1 cut(s)	1700
MspI	CCGG	4 cut(s)	259, 413, 705, 1872
MspR9I	CCNGG	4 cut(s)	259, 959, 1873, 2117
MunI	CAATTG	2 cut(s)	372, 1374
MvaI	CCWGG	2 cut(s)	959, 2117
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	9 cut(s)	263, 443, 493, 878, 974, 1049, 1631, 1643, 1991
NciI	CCSGG	2 cut(s)	259, 1873
NcoI	CCATGG	3 cut(s)	1093, 1653, 1813
NdeII	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
NlaIV	GGNNCC	3 cut(s)	235, 1920, 2039
NmeAIII	GCCGAG	1 cut(s)	1892
NmuCI	GTSAC	7 cut(s)	158, 182, 199, 362, 724, 1423, 2090
NsbI	TGCGCA	1 cut(s)	1057
NspI	RCATGY	6 cut(s)	222, 1159, 1555, 1699, 1755, 1912
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	2 cut(s)	1755, 1912
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	2 cut(s)	1155, 1551
PdmI	GAANNNNTTC	2 cut(s)	477, 1592
PfeI	GAWTC	3 cut(s)	544, 1070, 2313
PflFI	GACNNNGTC	1 cut(s)	2111
PflMI	CCANNNNNTGG	1 cut(s)	964
PleI	GAGTC	5 cut(s)	30, 807, 814, 1480, 2070
PpsI	GAGTC	5 cut(s)	30, 807, 814, 1480, 2070
PscI	ACATGT	2 cut(s)	1155, 1551
Psp124BI	GAGCTC	2 cut(s)	1468, 1678
Psp6I	CCWGG	2 cut(s)	957, 2115
PspEI	GGTNACC	1 cut(s)	1027
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	2 cut(s)	957, 2115
PspN4I	GGNNCC	3 cut(s)	235, 1920, 2039
PspPI	GGNCC	3 cut(s)	1009, 1348, 1810
PstI	CTGCAG	1 cut(s)	1636
PstNI	CAGNNNCTG	1 cut(s)	964
PsyI	GACNNNGTC	1 cut(s)	2111
PvuII	CAGCTG	2 cut(s)	484, 1997
RsaI	GTAC	5 cut(s)	907, 1160, 1743, 2147, 2363
RsaNI	GTAC	5 cut(s)	906, 1159, 1742, 2146, 2362
RseI	CAYNNNNRTG	5 cut(s)	552, 1098, 1160, 1793, 1913
SacI	GAGCTC	2 cut(s)	1468, 1678
SalI	GTCGAC	1 cut(s)	2157
SaqAI	TTAA	5 cut(s)	116, 270, 711, 1193, 1701
Sau3AI	GATC	7 cut(s)	1312, 1471, 1570, 1855, 1894, 2101, 2283
Sau96I	GGNCC	3 cut(s)	1009, 1348, 1810
ScaI	AGTACT	2 cut(s)	1743, 2147
SchI	GAGTC	5 cut(s)	31, 807, 815, 1480, 2070
ScrFI	CCNGG	4 cut(s)	259, 959, 1873, 2117
SduI	GDGCHC	8 cut(s)	236, 452, 570, 1345, 1468, 1678, 1878, 1943
SfaNI	GCATC	5 cut(s)	868, 1290, 1383, 1451, 2074
SfcI	CTRYAG	3 cut(s)	984, 1221, 1632
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	1348, 1810
SmiMI	CAYNNNNRTG	5 cut(s)	552, 1098, 1160, 1793, 1913
SmlI	CTYRAG	4 cut(s)	605, 815, 1700, 2297
SmoI	CTYRAG	4 cut(s)	605, 815, 1700, 2297
SpeI	ACTAGT	1 cut(s)	629
SphI	GCATGC	2 cut(s)	1755, 1912
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	4 cut(s)	6, 1170, 1528, 1783
SspMI	CTAG	7 cut(s)	348, 630, 969, 1118, 1679, 1862, 2330
SstI	GAGCTC	2 cut(s)	1468, 1678
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	257, 957, 1871, 2115
StyI	CCWWGG	4 cut(s)	90, 1093, 1653, 1813
TaaI	ACNGT	4 cut(s)	125, 158, 1222, 2361
TaiI	ACGT	2 cut(s)	1977, 2097
TaqI	TCGA	7 cut(s)	240, 690, 1211, 1960, 1977, 2106, 2158
TaqII	GACCGA	1 cut(s)	1415
TatI	WGTACW	3 cut(s)	1158, 1741, 2145
TauI	GCSGC	3 cut(s)	8, 1173, 1531
TfiI	GAWTC	3 cut(s)	544, 1070, 2313
Tru1I	TTAA	5 cut(s)	116, 270, 711, 1193, 1701
Tru9I	TTAA	5 cut(s)	116, 270, 711, 1193, 1701
TscAI	CASTG	2 cut(s)	161, 444
TseFI	GTSAC	7 cut(s)	158, 182, 199, 362, 724, 1423, 2090
TseI	GCWGC	8 cut(s)	484, 701, 881, 1040, 1634, 1755, 1952, 1994
Tsp45I	GTSAC	7 cut(s)	158, 182, 199, 362, 724, 1423, 2090
TspGWI	ACGGA	2 cut(s)	420, 923
TspRI	CASTG	2 cut(s)	161, 444
Tth111I	GACNNNGTC	1 cut(s)	2111
Van91I	CCANNNNNTGG	1 cut(s)	964
Vha464I	CTTAAG	1 cut(s)	1700
VpaK11BI	GGWCC	2 cut(s)	1348, 1810
XapI	RAATTY	3 cut(s)	535, 838, 1287
XbaI	TCTAGA	1 cut(s)	1678
XceI	RCATGY	6 cut(s)	222, 1159, 1555, 1699, 1755, 1912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1645
XmiI	GTMKAC	1 cut(s)	2158
XmnI	GAANNNNTTC	2 cut(s)	477, 1592
XspI	CTAG	7 cut(s)	348, 630, 969, 1118, 1679, 1862, 2330
ZrmI	AGTACT	2 cut(s)	1743, 2147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.