Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2318260 .. 2318890

Gene Structure 631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGGGGTTCAGCTCCATTATGGGTTCGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGGACTTGGATTATGCCCGGAAGTTGTTTGATGAAATGCTTGAGAGAAACACTGTGTCGTGGACTAGTTTGATTTGTGGTTATGATAGCAGGAATATGCGAAAGGAGGCTGTTTCTTTGTTTTTCGAGATGGTGGCTACTGGGATCAAACCCAATTCGGTGACCATGGTGTGTGTCATTTCCGCTTGCGCAAAGTTGAAGGATGTTGCTTTGAGTGAGAGGGCGTGTGTTTACATGATTACAACCCTAGTACCAAAAATCCAAAATAAGATAAAATTCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

6.56

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 92	2.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	271
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	52, 356
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	280
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
AlwI	GGATC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	52, 356
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BccI	CCATC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	2 cut(s)	147, 329
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	247, 316
CviJI	RGCY	3 cut(s)	15, 191, 218
CviKI_1	RGCY	3 cut(s)	15, 191, 218
CviQI	GTAC	1 cut(s)	332
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	246
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	250, 319
FaiI	YATR	8 cut(s)	23, 72, 96, 165, 179, 248, 317, 364
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	246, 315
FokI	GGATG	1 cut(s)	296
FspBI	CTAG	2 cut(s)	147, 329
FspI	TGCGCA	1 cut(s)	271
GlaI	GCGC	1 cut(s)	271
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	250, 319
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	144, 313
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	144, 313
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	250, 319
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	3 cut(s)	113, 157, 207
MaeI	CTAG	2 cut(s)	147, 329
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	3 cut(s)	52, 235, 356
MnlI	CCTC	3 cut(s)	25, 181, 294
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	100
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	250, 319
NmuCI	GTSAC	1 cut(s)	241
NsbI	TGCGCA	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	100
SetI	ASST	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	3 cut(s)	52, 235, 356
SsiI	CCGC	1 cut(s)	264
SspMI	CTAG	2 cut(s)	147, 329
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	52, 235, 356
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	17, 53, 129
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	52, 356
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	147, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.