Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

51628851 .. 51635398

Gene Structure 6548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2550 bp

ATGGCCGCAATGCTTCAGCTGAGTCCTCTGGTCTCAGCCACCCCAAGTTTCGTAGCTCCCACTAACCAAAACGAACCCAAAGCCATAGCCAAGGACACTTCCCCAACTGGGTCACTAAGAAACTGTAAAACCATAAACCAAGTGAAGCAACTTCAGTGTCACATCACTAAGACAGGCCTCAGTCACACACCCTCTAATGTCACTAAGCTAATTAGCGCATGCGCCGAAATGGGCACCTTCGAAAGCTTAGATTATGCCCGGAAAGCCTTTAACTTGTTTCTTGAAGAAGAAGAAGAAGAAGAAACTAAGGGTGTATTGTTCATGTATAATTCTCTCATAAGGGGTTACTCTAGTGCTGGGCTTTGTGACGAGGCTATTGGGCTTTATGTTCAGATGGTGCTTCAGGGTGTTTTGCCGGATAAGTTCACATTTCCGTTTGCACTGAGCGCGTGCGCAAAGATTGTGGCTTTCTGTGAAGGTGTTCAGCTGCACGGGTCGCTTGTGAAGATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGCACTTGGATTATGCCCACAAGGTGTTTGATGAAATGCTTGAGAGAAACATCGTGTCGTGGACTAGTTTGATTTGTGGCTATGGTAGGAGGAATATGCCAAAGCAGGCTGTTTCTTTGTTTTTTGAGATGGTGGCTGCCGGTGTTAAGCCCAATTCGGTGACTATGGTGTGTGTCATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGTTGAGTGAGAGAGTGTGTGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTTGTTGATATGTATATGAAATGTGGAGCTACTGATGCAGCAAAGCGGCTTTTTGATGAATGTGTGGATAAAAACTTGGTTCTTTACAACACGTTTTTGTCAAATTATGTGCGCCAGGGACTGGCTAGTGAAGCAGTTTCTGTCGTGGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGTTACCATGTTAGCTACAATTTCAGTTTGCGCACAGCTAAGTGATTCTCTCTCAGGTAAGTGTTGCCATGGTTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATTTGTAATGCCATGATTGACATGTACATGAAGTGCGGCCAACAAGAGCTGGCCTGCATAATTTTTGACAATATGTCGAATAAGACTGTAGTATCATGGAACTCCTTGATTTCTGGTTTCATAAGAAGTGGCGATGTGAAGTCAGCTTGGGAAATTTTCAATGAGATGCCGAAGAGTGATCTCGTCTCTTGGAACACTATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTTTTCCGGGTGATGCAGACCGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGTTGCATCTGCCTGCGGATATTTAGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATTGAAAAAAACGAAATCAAATGTGATACGCGGCTTGGGACGGCCTTAGTTGACATGTTTGCTAAATGTGGTGATCCTCAAAGTGCAATGAAAGTGTTCAATACAATGGCAAGGAGAGATGTTTCTGCTTGGACTGCAGCCATCAGAGCAATGGCCATGGAGGGAAATGGGAAACGAGCTCTAGAACTTTTTGATGACATGCTTAAGCAAGGGGTGAAACCTGATGAAGTAGTCTTTGTGGCAGTACTAACAGCGTGCAGCCATGTTGGTCTTTTGGAACAAGGGCGGAACATTTTTATGTCAATGCAGTTGGTCCATGGCATTTCCCCTCATATCGTTCATTACGGTTGCATGGTCGATCTACTAGGCCGAGCCGGGCTCTTGGAAGAAGCTGTTGATCTGATAAAGTGCATGCCAATGGAACCCAATGATGTCATTTGGGGCACTCTCTTGGCTGCTTGTCGAACCCACAAAAAGGTCGAAATGGCAACATATGCAGCTGAACAGATATCAAAGTTGACCACTCAGAGGACTGGTATTCATGTGCTTCTCTCAAACATATATGCATCAGCTGGGAAATGGGCAGACGTTGCAAAAGTGAGGCTACAATTGAAAGAGAGAGGGATTCAGAAGGTACCCGGATCCAGTTCCATTGAAGTTAATGGAGTGATTCATGAGTTTACTTCCGGTGGTGATACTAATACACACACAGAGAGGAGCCACATTGCATTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGTTACGTTCCTGATCTCGACAATGTCCTGGTTGATGTTGATGAGAAGGAGAAAGAGTACTTGCTCAGTCGACATAGTGAGAAAGTGGCCATAGCTTTTGGGCTTATAGGTACGGGGCAAGGAGTGCCAATTCGCGTGGTGAAGAATCTGAGAATGTGTTCTGATTGTCACTCTTTTGCCAAATTAGTATCAAGAATATATGACAGGGAAATTATTGTTCGAGATAACAACAGGTTCCATTTCTTTAGTCAGGGCCTGTGCTCTTGCAGTGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

849

Amino Acids

93.8

Weight (kDa)

5.97

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	107 - 153	4.4e-08	PPR repeat family
PPR	PF01535	107 - 137	1e-06	PPR repeat
PPR_2	PF13041	205 - 254	3.1e-12	PPR repeat family
PPR	PF01535	208 - 238	9.8e-07	PPR repeat
PPR_2	PF13041	307 - 354	3.1e-07	PPR repeat family
PPR_2	PF13041	408 - 438	1.3e-08	PPR repeat family
PPR_1	PF12854	408 - 435	4.4e-06	PPR repeat
PPR	PF01535	410 - 439	1.1e-07	PPR repeat
PPR_2	PF13041	439 - 478	2.1e-08	PPR repeat family
PPR	PF01535	441 - 471	1.9e-07	PPR repeat
PPR_2	PF13041	539 - 587	6.2e-09	PPR repeat family
E_motif	PF20431	657 - 719	1.1e-16	E motif
DYW_deaminase	PF14432	757 - 849	7.6e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	454, 1060
Acc65I	GGTACC	1 cut(s)	2134
AccB1I	GGYRCC	2 cut(s)	233, 2134
AccB7I	CCANNNNNTGG	1 cut(s)	967
AccI	GTMKAC	1 cut(s)	2338
AccII	CGCG	3 cut(s)	449, 1531, 2403
AciI	CCGC	6 cut(s)	6, 892, 1173, 1455, 1531, 1786
AclWI	GGATC	3 cut(s)	1568, 2136, 2149
AcoI	YGGCCR	4 cut(s)	3, 1174, 1653, 2355
AcsI	RAATTY	3 cut(s)	538, 841, 1290
AcuI	CTGAAG	2 cut(s)	137, 386
AdeI	CACNNNGTG	1 cut(s)	592
AfaI	GTAC	5 cut(s)	1163, 1746, 2136, 2327, 2380
AfiI	CCNNNNNNNGG	4 cut(s)	108, 967, 1975, 2028
AflII	CTTAAG	1 cut(s)	1703
AflIII	ACRYGT	3 cut(s)	936, 1158, 1554
AgsI	TTSAA	8 cut(s)	284, 766, 1297, 1382, 1505, 1600, 2113, 2156
AhdI	GACNNNNNGTC	1 cut(s)	1210
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	2 cut(s)	960, 2295
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
Alw21I	GWGCWC	4 cut(s)	1348, 1471, 1681, 2531
Alw26I	GTCTC	2 cut(s)	37, 1327
AlwI	GGATC	3 cut(s)	1568, 2136, 2149
AlwNI	CAGNNNCTG	3 cut(s)	967, 986, 2524
ApeKI	GCWGC	7 cut(s)	487, 704, 884, 1637, 1758, 1955, 1997
ApoI	RAATTY	3 cut(s)	538, 841, 1290
Asp700I	GAANNNNTTC	3 cut(s)	480, 1595, 2425
Asp718I	GGTACC	1 cut(s)	2134
AspLEI	GCGC	6 cut(s)	218, 224, 449, 455, 960, 1061
AspS9I	GGNCC	4 cut(s)	1012, 1351, 1813, 2521
AsuC2I	CCSGG	4 cut(s)	259, 1391, 1876, 2139
AsuHPI	GGTGA	9 cut(s)	739, 850, 1007, 1405, 1438, 1583, 1726, 2204, 2419
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	1351, 1813
BaeGI	GKGCMC	3 cut(s)	236, 573, 1946
BaeI	ACNNNNGTAYC	2 cut(s)	1212, 1245
BalI	TGGCCA	2 cut(s)	1655, 2357
BamHI	GGATCC	1 cut(s)	2141
BanI	GGYRCC	2 cut(s)	233, 2134
BanII	GRGCYC	3 cut(s)	1471, 1681, 1881
Bbv12I	GWGCWC	4 cut(s)	1348, 1471, 1681, 2531
BbvI	GCAGC	7 cut(s)	474, 691, 896, 1649, 1770, 1942, 2009
BccI	CCATC	4 cut(s)	388, 502, 691, 1649
BceAI	ACGGC	1 cut(s)	1557
BciT130I	CCWGG	2 cut(s)	962, 2297
BciVI	GTATCC	1 cut(s)	1126
BcnI	CCSGG	4 cut(s)	259, 1391, 1876, 2139
BcoDI	GTCTC	2 cut(s)	37, 1327
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	6 cut(s)	351, 633, 972, 1121, 1682, 1865
BfmI	CTRYAG	2 cut(s)	1224, 1635
BfrI	CTTAAG	1 cut(s)	1703
BfuI	GTATCC	1 cut(s)	1126
BmcAI	AGTACT	2 cut(s)	1746, 2327
Bme1390I	CCNGG	6 cut(s)	259, 962, 1391, 1876, 2139, 2297
Bme18I	GGWCC	2 cut(s)	1351, 1813
BmeRI	GACNNNNNGTC	1 cut(s)	1210
BmgT120I	GGNCC	4 cut(s)	1012, 1351, 1813, 2521
BmiI	GGNNCC	6 cut(s)	235, 1923, 2136, 2143, 2219, 2504
BmrFI	CCNGG	6 cut(s)	259, 962, 1391, 1876, 2139, 2297
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	6 cut(s)	871, 1293, 1386, 1454, 2075, 2254
BmuI	ACTGGG	1 cut(s)	117
BplI	GAGNNNNNCTC	2 cut(s)	1863, 1895
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	629, 803
BpuMI	CCSGG	4 cut(s)	259, 1391, 1876, 2139
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	7 cut(s)	90, 961, 1096, 1404, 1431, 1656, 1816
BsaWI	WCCGGW	1 cut(s)	2186
BsaXI	ACNNNNNCTCC	4 cut(s)	1410, 1440, 2309, 2339
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 967, 1975, 2028
Bse118I	RCCGGY	1 cut(s)	707
Bse1I	ACTGG	5 cut(s)	112, 972, 2038, 2145, 2549
Bse3DI	GCAATG	4 cut(s)	15, 1593, 1656, 2223
BseBI	CCWGG	2 cut(s)	962, 2297
BseDI	CCNNGG	7 cut(s)	90, 961, 1096, 1404, 1431, 1656, 1816
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	4 cut(s)	108, 967, 1975, 2028
BseMI	GCAATG	4 cut(s)	15, 1593, 1656, 2223
BseMII	CTCAG	9 cut(s)	11, 48, 193, 434, 1095, 2039, 2272, 2347, 2408
BseNI	ACTGG	5 cut(s)	112, 972, 2038, 2145, 2549
BseRI	GAGGAG	1 cut(s)	2230
BseSI	GKGCMC	3 cut(s)	236, 573, 1946
BseXI	GCAGC	7 cut(s)	474, 691, 896, 1649, 1770, 1942, 2009
BseYI	CCCAGC	2 cut(s)	356, 2072
BsgI	GTGCAG	2 cut(s)	473, 1777
Bsh1236I	CGCG	3 cut(s)	449, 1531, 2403
BshNI	GGYRCC	2 cut(s)	233, 2134
BsiHKAI	GWGCWC	4 cut(s)	1348, 1471, 1681, 2531
BsiSI	CCGG	7 cut(s)	259, 416, 708, 1390, 1875, 2139, 2187
BslFI	GGGAC	2 cut(s)	978, 1552
BslI	CCNNNNNNNGG	4 cut(s)	108, 967, 1975, 2028
BsmAI	GTCTC	2 cut(s)	37, 1327
BsmBI	CGTCTC	1 cut(s)	1327
BsmFI	GGGAC	2 cut(s)	978, 1552
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	8 cut(s)	236, 573, 1348, 1471, 1681, 1881, 1946, 2531
Bsp1407I	TGTACA	1 cut(s)	1161
Bsp143I	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
Bsp19I	CCATGG	4 cut(s)	1096, 1431, 1656, 1816
BspACI	CCGC	6 cut(s)	6, 892, 1173, 1455, 1531, 1786
BspCNI	CTCAG	9 cut(s)	12, 47, 192, 435, 1094, 2038, 2271, 2346, 2409
BspFNI	CGCG	3 cut(s)	449, 1531, 2403
BspHI	TCATGA	1 cut(s)	2173
BspLI	GGNNCC	6 cut(s)	235, 1923, 2136, 2143, 2219, 2504
BspMAI	CTGCAG	1 cut(s)	1639
BspPI	GGATC	3 cut(s)	1568, 2136, 2149
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	233, 2134
BspTI	CTTAAG	1 cut(s)	1703
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	4 cut(s)	15, 1593, 1656, 2223
BsrFI	RCCGGY	1 cut(s)	707
BsrGI	TGTACA	1 cut(s)	1161
BsrI	ACTGG	5 cut(s)	112, 972, 2038, 2145, 2549
BssAI	RCCGGY	1 cut(s)	707
BssECI	CCNNGG	7 cut(s)	90, 961, 1096, 1404, 1431, 1656, 1816
BssMI	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
BssT1I	CCWWGG	5 cut(s)	90, 1096, 1431, 1656, 1816
Bst2UI	CCWGG	2 cut(s)	962, 2297
Bst4CI	ACNGT	3 cut(s)	125, 1225, 1847
Bst6I	CTCTTC	1 cut(s)	1304
BstAFI	CTTAAG	1 cut(s)	1703
BstAPI	GCANNNNNTGC	3 cut(s)	1994, 2090, 2392
BstAUI	TGTACA	1 cut(s)	1161
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	8 cut(s)	220, 451, 675, 1188, 1192, 1453, 1756, 1913
BstDSI	CCRYGG	4 cut(s)	1096, 1431, 1656, 1816
BstEII	GGTNACC	2 cut(s)	1030, 1426
BstF5I	GGATG	1 cut(s)	775
BstFNI	CGCG	3 cut(s)	449, 1531, 2403
BstHHI	GCGC	6 cut(s)	218, 224, 449, 455, 960, 1061
BstKTI	GATC	7 cut(s)	1318, 1477, 1576, 1861, 1900, 2144, 2284
BstMAI	GTCTC	2 cut(s)	37, 1327
BstMBI	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
BstNI	CCWGG	2 cut(s)	962, 2297
BstNSI	RCATGY	5 cut(s)	222, 1162, 1558, 1702, 1915
BstPI	GGTNACC	2 cut(s)	1030, 1426
BstSCI	CCNGG	6 cut(s)	257, 960, 1389, 1874, 2137, 2295
BstSFI	CTRYAG	2 cut(s)	1224, 1635
BstSLI	GKGCMC	3 cut(s)	236, 573, 1946
BstUI	CGCG	3 cut(s)	449, 1531, 2403
BstV1I	GCAGC	7 cut(s)	474, 691, 896, 1649, 1770, 1942, 2009
BstX2I	RGATCY	1 cut(s)	2141
BstYI	RGATCY	1 cut(s)	2141
BsuI	GTATCC	1 cut(s)	1126
BtgI	CCRYGG	4 cut(s)	1096, 1431, 1656, 1816
BtgZI	GCGATG	1 cut(s)	1284
BtsCI	GGATG	1 cut(s)	775
BtsI	GCAGTG	1 cut(s)	2542
BtsIMutI	CAGTG	3 cut(s)	161, 440, 2542
Cac8I	GCNNGC	8 cut(s)	220, 451, 675, 1188, 1192, 1453, 1756, 1913
CaiI	CAGNNNCTG	3 cut(s)	967, 986, 2524
CciI	TCATGA	1 cut(s)	2173
CfoI	GCGC	6 cut(s)	218, 224, 449, 455, 960, 1061
Cfr10I	RCCGGY	1 cut(s)	707
Cfr13I	GGNCC	4 cut(s)	1012, 1351, 1813, 2521
Csp6I	GTAC	5 cut(s)	1162, 1745, 2135, 2326, 2379
CspCI	CAANNNNNGTGG	4 cut(s)	444, 479, 2385, 2420
CviQI	GTAC	5 cut(s)	1162, 1745, 2135, 2326, 2379
DpnI	GATC	7 cut(s)	1317, 1476, 1575, 1860, 1899, 2143, 2283
DpnII	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
DraIII	CACNNNGTG	1 cut(s)	592
DriI	GACNNNNNGTC	1 cut(s)	1210
EaeI	YGGCCR	4 cut(s)	3, 1174, 1653, 2355
Eam1104I	CTCTTC	1 cut(s)	1304
Eam1105I	GACNNNNNGTC	1 cut(s)	1210
EarI	CTCTTC	1 cut(s)	1304
EciI	GGCGGA	1 cut(s)	1801
Ecl136II	GAGCTC	2 cut(s)	1469, 1679
Eco130I	CCWWGG	5 cut(s)	90, 1096, 1431, 1656, 1816
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	3 cut(s)	1471, 1681, 1881
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	2010
Eco47I	GGWCC	2 cut(s)	1351, 1813
Eco53kI	GAGCTC	2 cut(s)	1469, 1679
Eco57I	CTGAAG	2 cut(s)	137, 386
Eco91I	GGTNACC	2 cut(s)	1030, 1426
EcoICRI	GAGCTC	2 cut(s)	1469, 1679
EcoO109I	RGGNCCY	2 cut(s)	1012, 2521
EcoO65I	GGTNACC	2 cut(s)	1030, 1426
EcoRI	GAATTC	2 cut(s)	538, 841
EcoRII	CCWGG	2 cut(s)	960, 2295
EcoRV	GATATC	1 cut(s)	2010
EcoT14I	CCWWGG	5 cut(s)	90, 1096, 1431, 1656, 1816
EcoT22I	ATGCAT	1 cut(s)	2068
EcoT38I	GRGCYC	3 cut(s)	1471, 1681, 1881
ErhI	CCWWGG	5 cut(s)	90, 1096, 1431, 1656, 1816
Esp3I	CGTCTC	1 cut(s)	1327
FaqI	GGGAC	2 cut(s)	978, 1552
FauNDI	CATATG	1 cut(s)	1993
FblI	GTMKAC	1 cut(s)	2338
FokI	GGATG	1 cut(s)	782
FriOI	GRGCYC	3 cut(s)	1471, 1681, 1881
FspBI	CTAG	6 cut(s)	351, 633, 972, 1121, 1682, 1865
FspI	TGCGCA	2 cut(s)	454, 1060
GlaI	GCGC	6 cut(s)	217, 223, 448, 454, 959, 1060
GsaI	CCCAGC	2 cut(s)	360, 2076
HapII	CCGG	7 cut(s)	259, 416, 708, 1390, 1875, 2139, 2187
HhaI	GCGC	6 cut(s)	218, 224, 449, 455, 960, 1061
Hin6I	GCGC	6 cut(s)	216, 222, 447, 453, 958, 1059
HinP1I	GCGC	6 cut(s)	216, 222, 447, 453, 958, 1059
HincII	GTYRAC	3 cut(s)	1552, 2019, 2339
HindII	GTYRAC	3 cut(s)	1552, 2019, 2339
HindIII	AAGCTT	1 cut(s)	244
HpaII	CCGG	7 cut(s)	259, 416, 708, 1390, 1875, 2139, 2187
HphI	GGTGA	9 cut(s)	739, 850, 1007, 1405, 1438, 1583, 1726, 2204, 2419
Hpy166II	GTNNAC	7 cut(s)	426, 630, 1488, 1552, 2019, 2181, 2339
Hpy188I	TCNGA	8 cut(s)	393, 1646, 1902, 2028, 2130, 2261, 2418, 2431
Hpy8I	GTNNAC	7 cut(s)	426, 630, 1488, 1552, 2019, 2181, 2339
HpyAV	CCTTC	6 cut(s)	247, 470, 760, 1118, 2125, 2308
HpyCH4III	ACNGT	3 cut(s)	125, 1225, 1847
HpyCH4IV	ACGT	3 cut(s)	938, 2088, 2274
HpySE526I	ACGT	3 cut(s)	938, 2088, 2274
HspAI	GCGC	6 cut(s)	216, 222, 447, 453, 958, 1059
KpnI	GGTACC	1 cut(s)	2138
Kzo9I	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
LmnI	GCTCC	4 cut(s)	61, 872, 1466, 2217
Lsp1109I	GCAGC	7 cut(s)	474, 691, 896, 1649, 1770, 1942, 2009
LweI	GCATC	6 cut(s)	871, 1293, 1386, 1454, 2075, 2254
MaeI	CTAG	6 cut(s)	351, 633, 972, 1121, 1682, 1865
MaeII	ACGT	3 cut(s)	938, 2088, 2274
MalI	GATC	7 cut(s)	1317, 1476, 1575, 1860, 1899, 2143, 2283
MboI	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
MfeI	CAATTG	2 cut(s)	1377, 2108
MflI	RGATCY	1 cut(s)	2141
MhlI	GDGCHC	8 cut(s)	236, 573, 1348, 1471, 1681, 1881, 1946, 2531
MlsI	TGGCCA	2 cut(s)	1655, 2357
MluNI	TGGCCA	2 cut(s)	1655, 2357
MlyI	GAGTC	5 cut(s)	31, 810, 818, 1483, 2250
Mox20I	TGGCCA	2 cut(s)	1655, 2357
Mph1103I	ATGCAT	1 cut(s)	2068
MroXI	GAANNNNTTC	3 cut(s)	480, 1595, 2425
MscI	TGGCCA	2 cut(s)	1655, 2357
MseI	TTAA	4 cut(s)	270, 714, 1704, 2160
MslI	CAYNNNNRTG	5 cut(s)	555, 1101, 1163, 1796, 1916
Msp20I	TGGCCA	2 cut(s)	1655, 2357
MspA1I	CMGCKG	4 cut(s)	19, 487, 2000, 2072
MspCI	CTTAAG	1 cut(s)	1703
MspI	CCGG	7 cut(s)	259, 416, 708, 1390, 1875, 2139, 2187
MspR9I	CCNGG	6 cut(s)	259, 962, 1391, 1876, 2139, 2297
MunI	CAATTG	2 cut(s)	1377, 2108
MvaI	CCWGG	2 cut(s)	962, 2297
MvnI	CGCG	3 cut(s)	449, 1531, 2403
NciI	CCSGG	4 cut(s)	259, 1391, 1876, 2139
NcoI	CCATGG	4 cut(s)	1096, 1431, 1656, 1816
NdeI	CATATG	1 cut(s)	1993
NdeII	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
NlaIV	GGNNCC	6 cut(s)	235, 1923, 2136, 2143, 2219, 2504
NmeAIII	GCCGAG	1 cut(s)	1895
NmuCI	GTSAC	8 cut(s)	111, 158, 182, 199, 365, 727, 1426, 2435
NsbI	TGCGCA	2 cut(s)	454, 1060
NsiI	ATGCAT	1 cut(s)	2068
NspI	RCATGY	5 cut(s)	222, 1162, 1558, 1702, 1915
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	2 cut(s)	222, 1915
PagI	TCATGA	1 cut(s)	2173
PceI	AGGCCT	1 cut(s)	177
PciI	ACATGT	2 cut(s)	1158, 1554
PdmI	GAANNNNTTC	3 cut(s)	480, 1595, 2425
PfeI	GAWTC	5 cut(s)	547, 1073, 2125, 2170, 2413
PflFI	GACNNNGTC	1 cut(s)	2291
PflMI	CCANNNNNTGG	1 cut(s)	967
PleI	GAGTC	5 cut(s)	30, 810, 817, 1483, 2250
PpsI	GAGTC	5 cut(s)	30, 810, 817, 1483, 2250
PscI	ACATGT	2 cut(s)	1158, 1554
Psp124BI	GAGCTC	2 cut(s)	1471, 1681
Psp6I	CCWGG	2 cut(s)	960, 2295
PspEI	GGTNACC	2 cut(s)	1030, 1426
PspFI	CCCAGC	2 cut(s)	356, 2072
PspGI	CCWGG	2 cut(s)	960, 2295
PspN4I	GGNNCC	6 cut(s)	235, 1923, 2136, 2143, 2219, 2504
PspPI	GGNCC	4 cut(s)	1012, 1351, 1813, 2521
PstI	CTGCAG	1 cut(s)	1639
PstNI	CAGNNNCTG	3 cut(s)	967, 986, 2524
PsuI	RGATCY	1 cut(s)	2141
PsyI	GACNNNGTC	1 cut(s)	2291
PvuII	CAGCTG	4 cut(s)	19, 487, 2000, 2072
RsaI	GTAC	5 cut(s)	1163, 1746, 2136, 2327, 2380
RsaNI	GTAC	5 cut(s)	1162, 1745, 2135, 2326, 2379
RseI	CAYNNNNRTG	5 cut(s)	555, 1101, 1163, 1796, 1916
SacI	GAGCTC	2 cut(s)	1471, 1681
SalI	GTCGAC	1 cut(s)	2337
SaqAI	TTAA	4 cut(s)	270, 714, 1704, 2160
Sau3AI	GATC	7 cut(s)	1315, 1474, 1573, 1858, 1897, 2141, 2281
Sau96I	GGNCC	4 cut(s)	1012, 1351, 1813, 2521
ScaI	AGTACT	2 cut(s)	1746, 2327
SchI	GAGTC	5 cut(s)	31, 810, 818, 1483, 2250
ScrFI	CCNGG	6 cut(s)	259, 962, 1391, 1876, 2139, 2297
SduI	GDGCHC	8 cut(s)	236, 573, 1348, 1471, 1681, 1881, 1946, 2531
SfaNI	GCATC	6 cut(s)	871, 1293, 1386, 1454, 2075, 2254
SfcI	CTRYAG	2 cut(s)	1224, 1635
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	1351, 1813
SmiMI	CAYNNNNRTG	5 cut(s)	555, 1101, 1163, 1796, 1916
SmlI	CTYRAG	3 cut(s)	608, 818, 1703
SmoI	CTYRAG	3 cut(s)	608, 818, 1703
SpeI	ACTAGT	1 cut(s)	632
SphI	GCATGC	2 cut(s)	222, 1915
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	6 cut(s)	6, 892, 1173, 1455, 1531, 1786
SspMI	CTAG	6 cut(s)	351, 633, 972, 1121, 1682, 1865
SstI	GAGCTC	2 cut(s)	1471, 1681
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	6 cut(s)	257, 960, 1389, 1874, 2137, 2295
StyI	CCWWGG	5 cut(s)	90, 1096, 1431, 1656, 1816
TaaI	ACNGT	3 cut(s)	125, 1225, 1847
TaiI	ACGT	3 cut(s)	941, 2091, 2277
TaqI	TCGA	8 cut(s)	240, 1214, 1857, 1963, 1980, 2286, 2338, 2488
TaqII	GACCGA	1 cut(s)	1418
TatI	WGTACW	3 cut(s)	1161, 1744, 2325
TauI	GCSGC	4 cut(s)	8, 895, 1176, 1534
TfiI	GAWTC	5 cut(s)	547, 1073, 2125, 2170, 2413
Tru1I	TTAA	4 cut(s)	270, 714, 1704, 2160
Tru9I	TTAA	4 cut(s)	270, 714, 1704, 2160
TscAI	CASTG	3 cut(s)	161, 447, 2542
TseFI	GTSAC	8 cut(s)	111, 158, 182, 199, 365, 727, 1426, 2435
TseI	GCWGC	7 cut(s)	487, 704, 884, 1637, 1758, 1955, 1997
Tsp45I	GTSAC	8 cut(s)	111, 158, 182, 199, 365, 727, 1426, 2435
TspGWI	ACGGA	1 cut(s)	423
TspRI	CASTG	3 cut(s)	161, 447, 2542
Tth111I	GACNNNGTC	1 cut(s)	2291
Van91I	CCANNNNNTGG	1 cut(s)	967
Vha464I	CTTAAG	1 cut(s)	1703
VpaK11BI	GGWCC	2 cut(s)	1351, 1813
XapI	RAATTY	3 cut(s)	538, 841, 1290
XbaI	TCTAGA	1 cut(s)	1681
XceI	RCATGY	5 cut(s)	222, 1162, 1558, 1702, 1915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1648
XmiI	GTMKAC	1 cut(s)	2338
XmnI	GAANNNNTTC	3 cut(s)	480, 1595, 2425
XspI	CTAG	6 cut(s)	351, 633, 972, 1121, 1682, 1865
ZrmI	AGTACT	2 cut(s)	1746, 2327
Zsp2I	ATGCAT	1 cut(s)	2068

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.