Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001942.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

335199 .. 337789

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001942.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggatgtattcagggagttttttgcgctgcctccagaggacaaggcaaacttcttctgtgaggaccctaacaaactctgcaggctcataactagcaccggaaattatgattgggagaatgttcatctttggccggatgccctccgacacccttgtcatcctttagataaattcattccactttggcctcagcaaccgcttaaatatcagcaagggctacatgacatatatgttgtcaaattaaggatgaatgatggcatccaagggcctgtattcgtcctcactgccgatcctcagttggtcccactggccacggtgtgttgggattgggatgtgcttcataagcacatgtcccttgaagttaaagactttgcccggaaagccttcaacttgttccttgaagaagaagaagaagaagaaacaaagggtgtattgtttactgggaatactttgatccatttctatgcagaatgtgtggacttggatcatgtcccgaaggcgtttgatgaaatgcatgagagaaacactacgtcgtggactagtttgatttgtggttatggtaggagggatatgccaaaggaggctgtttctttgtttttcgagatggtggttgccggaattaaacccaattcggtgaggctacaattgaaagagaaagggattcagaaggtacccggatactgttccattgaagttaacggagtgatttatgggtttacccccggtgtgatactgatacaagtagaaattgtgtttggaatgcttcaattgtattattcatctcccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

263

Amino Acids

30.37

Weight (kDa)

5.28

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	153
Acc65I	GGTACC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	670
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	284, 448, 492
AcoI	YGGCCR	2 cut(s)	131, 309
AcsI	RAATTY	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	672
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	6 cut(s)	359, 388, 401, 649, 692, 767
AhlI	ACTAGT	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 738, 770
AlwI	GGATC	3 cut(s)	284, 448, 492
AoxI	GGCC	4 cut(s)	131, 185, 266, 309
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	383
Asp718I	GGTACC	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	64, 266, 301
AsuC2I	CCSGG	3 cut(s)	376, 675, 723
AsuHPI	GGTGA	1 cut(s)	646
AvaII	GGWCC	2 cut(s)	64, 301
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	670
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	248, 598
BciVI	GTATCC	1 cut(s)	671
BcnI	CCSGG	3 cut(s)	376, 675, 723
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	2 cut(s)	93, 540
BfmI	CTRYAG	1 cut(s)	79
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	376, 675, 723
Bme18I	GGWCC	2 cut(s)	64, 301
BmgT120I	GGNCC	3 cut(s)	64, 266, 301
BmiI	GGNNCC	3 cut(s)	66, 303, 672
BmrFI	CCNGG	3 cut(s)	376, 675, 723
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	127, 267
BmuI	ACTGGG	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	189
BpuMI	CCSGG	3 cut(s)	376, 675, 723
BsaJI	CCNNGG	3 cut(s)	262, 312, 721
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	312, 445
BseDI	CCNNGG	3 cut(s)	262, 312, 721
BseGI	GGATG	6 cut(s)	10, 142, 157, 252, 258, 337
BseMII	CTCAG	2 cut(s)	203, 308
BseNI	ACTGG	2 cut(s)	312, 445
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	4 cut(s)	133, 187, 268, 311
BshNI	GGYRCC	1 cut(s)	670
BsiSI	CCGG	6 cut(s)	99, 134, 376, 615, 675, 723
BslFI	GGGAC	3 cut(s)	287, 337, 476
BsmFI	GGGAC	3 cut(s)	287, 337, 476
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	4 cut(s)	133, 187, 268, 311
Bsp143I	GATC	3 cut(s)	289, 453, 484
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	4 cut(s)	133, 187, 268, 311
BspCNI	CTCAG	2 cut(s)	202, 307
BspLI	GGNNCC	3 cut(s)	66, 303, 672
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	3 cut(s)	284, 448, 492
BspT107I	GGYRCC	1 cut(s)	670
BsrI	ACTGG	2 cut(s)	312, 445
BssECI	CCNNGG	3 cut(s)	262, 312, 721
BssMI	GATC	3 cut(s)	289, 453, 484
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	2 cut(s)	316, 683
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	189, 294
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	6 cut(s)	10, 142, 157, 252, 258, 337
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	292, 456, 487
BstMBI	GATC	3 cut(s)	289, 453, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 380
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	3 cut(s)	374, 673, 721
BstSFI	CTRYAG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	4 cut(s)	133, 187, 268, 311
BtgI	CCRYGG	1 cut(s)	312
BtsCI	GGATG	6 cut(s)	10, 142, 157, 252, 258, 337
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	2 cut(s)	282, 305
Cac8I	GCNNGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	64, 266, 301
Csp6I	GTAC	1 cut(s)	671
CviAII	CATG	4 cut(s)	221, 349, 488, 515
CviJI	RGCY	9 cut(s)	85, 133, 187, 217, 268, 311, 383, 584, 640
CviKI_1	RGCY	9 cut(s)	85, 133, 187, 217, 268, 311, 383, 584, 640
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	2 cut(s)	189, 294
DpnI	GATC	3 cut(s)	291, 455, 486
DpnII	GATC	3 cut(s)	289, 453, 484
DraIII	CACNNNGTG	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	153
DseDI	GACNNNNNNGTC	1 cut(s)	153
EaeI	YGGCCR	2 cut(s)	131, 309
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	64, 301
EcoO109I	RGGNCCY	2 cut(s)	64, 266
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	4 cut(s)	224, 352, 491, 518
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	3 cut(s)	287, 337, 476
FatI	CATG	4 cut(s)	220, 348, 487, 514
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	6 cut(s)	17, 144, 149, 245, 259, 344
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	2 cut(s)	93, 540
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	18
HaeIII	GGCC	4 cut(s)	133, 187, 268, 311
HapII	CCGG	6 cut(s)	99, 134, 376, 615, 675, 723
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	4 cut(s)	224, 352, 491, 518
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	697
HindII	GTYRAC	1 cut(s)	697
HinfI	GANTC	1 cut(s)	661
HpaI	GTTAAC	1 cut(s)	697
HpaII	CCGG	6 cut(s)	99, 134, 376, 615, 675, 723
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	5 cut(s)	438, 478, 537, 697, 717
Hpy188I	TCNGA	2 cut(s)	146, 666
Hpy188III	TCNNGA	3 cut(s)	35, 493, 601
Hpy8I	GTNNAC	5 cut(s)	438, 478, 537, 697, 717
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	394, 490, 661
HpyCH4III	ACNGT	2 cut(s)	316, 683
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	3 cut(s)	81, 467, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 380
HpyF3I	CTNAG	2 cut(s)	189, 294
HpySE526I	ACGT	1 cut(s)	530
Hsp92II	CATG	4 cut(s)	224, 352, 491, 518
HspAI	GCGC	1 cut(s)	26
KpnI	GGTACC	1 cut(s)	674
KspAI	GTTAAC	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	289, 453, 484
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	2 cut(s)	127, 267
MaeI	CTAG	2 cut(s)	93, 540
MaeII	ACGT	1 cut(s)	530
MalI	GATC	3 cut(s)	291, 455, 486
MboI	GATC	3 cut(s)	289, 453, 484
MboII	GAAGA	7 cut(s)	46, 413, 416, 419, 422, 425, 428
MfeI	CAATTG	2 cut(s)	644, 767
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	8 cut(s)	103, 170, 239, 618, 628, 644, 747, 767
MluNI	TGGCCA	1 cut(s)	311
MmeI	TCCRAC	1 cut(s)	169
Mox20I	TGGCCA	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	516
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	5 cut(s)	201, 242, 363, 621, 696
MslI	CAYNNNNRTG	1 cut(s)	462
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	6 cut(s)	99, 134, 376, 615, 675, 723
MspR9I	CCNGG	3 cut(s)	376, 675, 723
MunI	CAATTG	2 cut(s)	644, 767
Mva1269I	GAATGC	1 cut(s)	765
MwoI	GCNNNNNNNGC	2 cut(s)	343, 380
NciI	CCSGG	3 cut(s)	376, 675, 723
NdeII	GATC	3 cut(s)	289, 453, 484
NlaIII	CATG	4 cut(s)	224, 352, 491, 518
NlaIV	GGNNCC	3 cut(s)	66, 303, 672
NsiI	ATGCAT	1 cut(s)	516
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PctI	GAATGC	1 cut(s)	765
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	661
PkrI	GCNGC	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	64
PscI	ACATGT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	66, 303, 672
PspPI	GGNCC	3 cut(s)	64, 266, 301
PspPPI	RGGWCCY	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	201, 242, 363, 621, 696
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	3 cut(s)	289, 453, 484
Sau96I	GGNCC	3 cut(s)	64, 266, 301
ScrFI	CCNGG	3 cut(s)	376, 675, 723
SetI	ASST	2 cut(s)	533, 672
SfaNI	GCATC	2 cut(s)	127, 267
SfcI	CTRYAG	1 cut(s)	79
SinI	GGWCC	2 cut(s)	64, 301
SmiMI	CAYNNNNRTG	1 cut(s)	462
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	8 cut(s)	103, 170, 239, 618, 628, 644, 747, 767
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	93, 540
StyD4I	CCNGG	3 cut(s)	374, 673, 721
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	316, 683
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	1 cut(s)	600
TasI	AATT	8 cut(s)	103, 170, 239, 618, 628, 644, 747, 767
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	5 cut(s)	201, 242, 363, 621, 696
Tru9I	TTAA	5 cut(s)	201, 242, 363, 621, 696
TscAI	CASTG	2 cut(s)	289, 312
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	6 cut(s)	113, 163, 263, 329, 522, 768
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	2 cut(s)	289, 312
VpaK11BI	GGWCC	2 cut(s)	64, 301
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	2 cut(s)	93, 540
Zsp2I	ATGCAT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.