Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006571.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

16865 .. 17251

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006571.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtgtgtaggcttctcgaagattgaaggagggagatttatgttgggtaatccctctcccaattttttcacaccaacaaaacccaatgatgccatttgcgacactctcttgtctgcttgtcgaacccacaaagacgtcgaaatggcagcatatgcagctgaatatatatcaaagttgaccactcagagaactggtattcatgtgcttcaatcaaacatatatgcatcagctgggaaatgggcagacattgcaaaagtgagactacaattgaaagagaaagggattcagaagatacccggatccagttccattgaaattaatggagtgattcatgagttatctccggtgaagagccacattgcggtggatgttgcaaaaaataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

128

Amino Acids

13.91

Weight (kDa)

9.22

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	294, 307
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	26, 209, 271, 314
AluBI	AGCT	2 cut(s)	158, 230
AluI	AGCT	2 cut(s)	158, 230
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	2 cut(s)	294, 307
ApeKI	GCWGC	2 cut(s)	146, 155
AseI	ATTAAT	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	158, 167
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	147, 156
BlsI	GCNGC	2 cut(s)	148, 157
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	2 cut(s)	79, 233
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	196, 303
Bse3DI	GCAATG	2 cut(s)	246, 357
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	2 cut(s)	246, 357
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	196, 303
BseXI	GCAGC	2 cut(s)	158, 167
BseYI	CCCAGC	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	297, 344
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	299
BspACI	CCGC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	2 cut(s)	294, 307
BspQI	GCTCTTC	1 cut(s)	344
BsrDI	GCAATG	2 cut(s)	246, 357
BsrI	ACTGG	2 cut(s)	196, 303
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	135
BstAPI	GCANNNNNTGC	2 cut(s)	152, 248
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	373
BstKTI	GATC	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 155, 248
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	158, 167
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	331
CviAII	CATG	2 cut(s)	200, 332
CviJI	RGCY	4 cut(s)	12, 158, 230, 354
CviKI_1	RGCY	4 cut(s)	12, 158, 230, 354
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EcoT22I	ATGCAT	1 cut(s)	226
FaeI	CATG	2 cut(s)	203, 335
FatI	CATG	2 cut(s)	199, 331
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	147, 156
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	147, 156
GluI	GCNGC	2 cut(s)	147, 156
GsaI	CCCAGC	1 cut(s)	234
HapII	CCGG	2 cut(s)	297, 344
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	203, 335
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	283, 328
HpaII	CCGG	2 cut(s)	297, 344
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	2 cut(s)	186, 288
Hpy188III	TCNNGA	2 cut(s)	16, 332
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	4 cut(s)	155, 224, 251, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 155, 248
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	203, 335
Kzo9I	GATC	1 cut(s)	299
LguI	GCTCTTC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	177, 216, 310, 316, 357
Lsp1109I	GCAGC	2 cut(s)	158, 167
LweI	GCATC	2 cut(s)	79, 233
MaeII	ACGT	1 cut(s)	135
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	3 cut(s)	31, 301, 361
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	3 cut(s)	61, 266, 315
MnlI	CCTC	2 cut(s)	23, 64
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	158, 230
MspI	CCGG	2 cut(s)	297, 344
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	152, 155, 248
NciI	CCSGG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	203, 335
NlaIV	GGNNCC	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	226
PagI	TCATGA	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	283, 328
PkrI	GCNGC	2 cut(s)	148, 157
PshBI	ATTAAT	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	2 cut(s)	158, 230
RseI	CAYNNNNRTG	1 cut(s)	362
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	2 cut(s)	147, 156
Sau3AI	GATC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	3 cut(s)	138, 160, 232
SfaNI	GCATC	2 cut(s)	79, 233
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	61, 266, 315
SsiI	CCGC	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	3 cut(s)	17, 121, 138
TasI	AATT	3 cut(s)	61, 266, 315
TfiI	GAWTC	2 cut(s)	283, 328
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseI	GCWGC	2 cut(s)	146, 155
TspDTI	ATGAA	2 cut(s)	188, 320
VspI	ATTAAT	1 cut(s)	318
ZraI	GACGTC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.