Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

1966698 .. 1967012

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G001010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCATCGAACCTCATAAGCACATGCGCCAAAATGGGCACCTTCGAAAGCTTACACCTTGCTCGAAAAGCCTTCAACTTGTTCCTTGAAGAAGAAGAAGAAGAAGAAACAAAGGGTGTATTGTTTATTGGGAATAATACTTTGATTCATTTCTATGCAGAATGCGGGGACTTGGATTATGCCCGGAAGGTGTTTGATGAAATGCTTGGGAGAATCACTGTGTCGTGGACTAGTTTGATTTGTGGTTATGGTTGGAAGAACATGCCAAAGGAGGCTGTTTTCTTTGTTTTTCGAGATGGTGGTTGCCGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

5.0

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	76, 89
AhlI	ACTAGT	1 cut(s)	230
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	2 cut(s)	184, 308
AsuII	TTCGAA	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	38
BccI	CCATC	1 cut(s)	290
BcnI	CCSGG	2 cut(s)	184, 308
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	184, 308
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	184, 308
Bpu14I	TTCGAA	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	184, 308
BseSI	GKGCMC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	184, 307
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	27, 265
BstSCI	CCNGG	2 cut(s)	182, 306
BstSLI	GKGCMC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	29
CviAII	CATG	2 cut(s)	24, 262
CviJI	RGCY	3 cut(s)	51, 71, 275
CviKI_1	RGCY	3 cut(s)	51, 71, 275
FaeI	CATG	2 cut(s)	27, 265
FaiI	YATR	6 cut(s)	17, 25, 156, 180, 249, 263
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	2 cut(s)	23, 261
FauI	CCCGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	28
HapII	CCGG	2 cut(s)	184, 307
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	27, 265
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	145, 213
HpaII	CCGG	2 cut(s)	184, 307
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188III	TCNNGA	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	3 cut(s)	52, 82, 181
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	27, 265
HspAI	GCGC	1 cut(s)	27
LpnPI	CCDG	1 cut(s)	197
MaeI	CTAG	1 cut(s)	231
MboII	GAAGA	7 cut(s)	101, 104, 107, 110, 113, 116, 268
MhlI	GDGCHC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	23, 265
MseI	TTAA	1 cut(s)	313
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	2 cut(s)	184, 307
MspR9I	CCNGG	2 cut(s)	184, 308
Mva1269I	GAATGC	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	2 cut(s)	184, 308
NlaIII	CATG	2 cut(s)	27, 265
NlaIV	GGNNCC	1 cut(s)	40
NspI	RCATGY	2 cut(s)	27, 265
NspV	TTCGAA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	145, 213
PspN4I	GGNNCC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	184, 308
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	5 cut(s)	15, 44, 53, 60, 192
SfuI	TTCGAA	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	182, 306
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	4 cut(s)	8, 45, 64, 292
TfiI	GAWTC	2 cut(s)	145, 213
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	137, 213
TspRI	CASTG	1 cut(s)	223
XceI	RCATGY	2 cut(s)	27, 265
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.