Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8009444.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 262

Gene Structure 262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8009444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 262 bp

aaggggttactctagtgctgggctttgtgacgaggctattgggctctatgttcagatggtgcttccgggtgttttgccggataagtttacattcccgtttgcattgagcgcgtgctcaaagattgtagctttctgtgaaggggttcagctccatgggtcgcttgtgaagatgggtttcgagcaagatgtgtttattgggaatcctttgattcatttctatgcagaatgtggggacttggattatgcccacaaaggtgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

86

Amino Acids

9.3

Weight (kDa)

5.04

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	129, 149
AluI	AGCT	2 cut(s)	129, 149
Alw21I	GWGCWC	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	2 cut(s)	50, 164
BcnI	CCSGG	1 cut(s)	67
BfaI	CTAG	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	66, 78
BslFI	GGGAC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	46, 117
Bsp19I	CCATGG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	111
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	5 cut(s)	23, 36, 44, 129, 149
CviKI_1	RGCY	5 cut(s)	23, 36, 44, 129, 149
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	156
FaiI	YATR	4 cut(s)	49, 154, 220, 244
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	13
GlaI	GCGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	22
HapII	CCGG	2 cut(s)	66, 78
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HinfI	GANTC	2 cut(s)	200, 209
HpaII	CCGG	2 cut(s)	66, 78
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	102, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	3 cut(s)	4, 79, 91
MaeI	CTAG	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	6, 27
MboII	GAAGA	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	46, 117
MnlI	CCTC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	142
MslI	CAYNNNNRTG	2 cut(s)	217, 253
MspI	CCGG	2 cut(s)	66, 78
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	108
NciI	CCSGG	1 cut(s)	67
NcoI	CCATGG	1 cut(s)	152
NlaIII	CATG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	200, 209
PspFI	CCCAGC	1 cut(s)	18
RseI	CAYNNNNRTG	2 cut(s)	217, 253
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	2 cut(s)	46, 117
SetI	ASST	3 cut(s)	131, 151, 257
SmiMI	CAYNNNNRTG	2 cut(s)	217, 253
SspMI	CTAG	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	178
TfiI	GAWTC	2 cut(s)	200, 209
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.