Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003413.1

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

302167 .. 302869

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003413.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgcggcttgggacagctttagttgacatgtatgctagatgtggcgaccctcaaaatgcaatgaagatgatcaataacatggcaagaagagatgtttctgcttcgactgcatccattggagcaatggccattatgggaaatggggaacgagctctagagctttttgatgaaacaaggggccgagcagggcgcttggaagaagctgttgatctggtaaagtgcatgccaatgaaacccagtgttgccatttgcggtactctcttggctgcatgtcgaacccacaaagacgtcgaaatggcagcatatgcagatgaatatatatcaaagttgaccactcagagaactggtattcatgtgcttcaatcaaacatatacgcatcagctgggaaatgggcagacattgcaaaagtgaggctacaattgaaagagaaagggattcagaaggtacccggatccggttccattgaaattaatggagtgattcatgagtttatctccggtgaagagccacattgtagtgatgttgcaagaaataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

179

Amino Acids

19.43

Weight (kDa)

8.28

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	1 cut(s)	445
AciI	CCGC	2 cut(s)	4, 252
AclWI	GGATC	2 cut(s)	447, 460
AcoI	YGGCCR	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	256, 447
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	362, 424, 467
AluBI	AGCT	5 cut(s)	17, 152, 160, 203, 383
AluI	AGCT	5 cut(s)	17, 152, 160, 203, 383
Alw21I	GWGCWC	1 cut(s)	154
AlwI	GGATC	2 cut(s)	447, 460
AoxI	GGCC	2 cut(s)	126, 178
ApeKI	GCWGC	2 cut(s)	266, 299
AseI	ATTAAT	1 cut(s)	471
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	253, 311
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	2 cut(s)	36, 155
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	3 cut(s)	5, 267, 300
BlsI	GCNGC	3 cut(s)	6, 268, 301
Bme1390I	CCNGG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	4 cut(s)	179, 447, 454, 460
BmrFI	CCNGG	1 cut(s)	450
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	119, 386
BmuI	ACTGGG	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpuMI	CCSGG	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	288
BsaWI	WCCGGW	2 cut(s)	455, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	237, 349
Bse3DI	GCAATG	3 cut(s)	66, 129, 399
BseGI	GGATG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	3 cut(s)	66, 129, 399
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	2 cut(s)	237, 349
BseXI	GCAGC	2 cut(s)	253, 311
BseYI	CCCAGC	1 cut(s)	383
BshFI	GGCC	2 cut(s)	128, 180
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	450, 456, 498
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	128, 180
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	69, 208, 452
BspACI	CCGC	2 cut(s)	4, 252
BspANI	GGCC	2 cut(s)	128, 180
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	4 cut(s)	179, 447, 454, 460
BspPI	GGATC	2 cut(s)	447, 460
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	445
BsrDI	GCAATG	3 cut(s)	66, 129, 399
BsrI	ACTGG	2 cut(s)	237, 349
BssMI	GATC	3 cut(s)	69, 208, 452
BssNI	GRCGYC	1 cut(s)	288
Bst6I	CTCTTC	2 cut(s)	82, 498
BstACI	GRCGYC	1 cut(s)	288
BstAPI	GCANNNNNTGC	2 cut(s)	305, 401
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	72, 211, 455
BstMBI	GATC	3 cut(s)	69, 208, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 305, 401
BstNSI	RCATGY	3 cut(s)	31, 226, 273
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	2 cut(s)	253, 311
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	128, 180
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	224
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	255, 446
CviAII	CATG	6 cut(s)	28, 79, 223, 270, 353, 485
CviQI	GTAC	2 cut(s)	255, 446
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	71, 210, 454
DpnII	GATC	3 cut(s)	69, 208, 452
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	82, 498
EarI	CTCTTC	2 cut(s)	82, 498
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	6 cut(s)	31, 82, 226, 273, 356, 488
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	6 cut(s)	27, 78, 222, 269, 352, 484
FauNDI	CATATG	1 cut(s)	304
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	5, 267, 300
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	5, 267, 300
FspBI	CTAG	2 cut(s)	36, 155
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	5, 267, 300
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	128, 180
HapII	CCGG	3 cut(s)	450, 456, 498
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	31, 82, 226, 273, 356, 488
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	25, 330
HindII	GTYRAC	2 cut(s)	25, 330
HinfI	GANTC	2 cut(s)	436, 481
HpaII	CCGG	3 cut(s)	450, 456, 498
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	25, 330
Hpy188I	TCNGA	2 cut(s)	339, 441
Hpy188III	TCNNGA	2 cut(s)	155, 485
Hpy8I	GTNNAC	2 cut(s)	25, 330
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	7 cut(s)	59, 110, 222, 269, 308, 404, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 305, 401
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	6 cut(s)	31, 82, 226, 273, 356, 488
HspAI	GCGC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	69, 208, 452
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	8 cut(s)	171, 197, 250, 330, 369, 463, 469, 511
Lsp1109I	GCAGC	2 cut(s)	253, 311
LweI	GCATC	2 cut(s)	119, 386
MaeI	CTAG	2 cut(s)	36, 155
MaeII	ACGT	1 cut(s)	288
MalI	GATC	3 cut(s)	71, 210, 454
MboI	GATC	3 cut(s)	69, 208, 452
MboII	GAAGA	4 cut(s)	76, 99, 209, 515
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	2 cut(s)	419, 468
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	2 cut(s)	60, 405
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	227, 516
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	3 cut(s)	450, 456, 498
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	107, 305, 401
NciI	CCSGG	1 cut(s)	450
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	3 cut(s)	69, 208, 452
NlaIII	CATG	6 cut(s)	31, 82, 226, 273, 356, 488
NlaIV	GGNNCC	4 cut(s)	179, 447, 454, 460
NmeAIII	GCCGAG	1 cut(s)	206
NspI	RCATGY	3 cut(s)	31, 226, 273
PaeI	GCATGC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	484
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	436, 481
PkrI	GCNGC	3 cut(s)	6, 268, 301
PscI	ACATGT	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	471
Psp124BI	GAGCTC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	4 cut(s)	179, 447, 454, 460
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	452
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	256, 447
RsaNI	GTAC	2 cut(s)	255, 446
RseI	CAYNNNNRTG	2 cut(s)	227, 516
SacI	GAGCTC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	3 cut(s)	5, 267, 300
Sau3AI	GATC	3 cut(s)	69, 208, 452
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	19, 154, 162, 205, 291, 385, 447
SfaNI	GCATC	2 cut(s)	119, 386
SmiMI	CAYNNNNRTG	2 cut(s)	227, 516
SphI	GCATGC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	419, 468
SsiI	CCGC	2 cut(s)	4, 252
SspMI	CTAG	2 cut(s)	36, 155
SstI	GAGCTC	1 cut(s)	154
StyD4I	CCNGG	1 cut(s)	448
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	104, 274, 291
TasI	AATT	2 cut(s)	419, 468
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	436, 481
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	266, 299
TspDTI	ATGAA	6 cut(s)	77, 183, 245, 327, 341, 473
TspRI	CASTG	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	471
XbaI	TCTAGA	1 cut(s)	154
XceI	RCATGY	3 cut(s)	31, 226, 273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	2 cut(s)	36, 155
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.