Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2017163 .. 2017937

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35989

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTGTGTTGTCCATCATGGACTGCTGCTTTATTATTTGTAGTAAAATGGATGATATTTTCTGCTTGATTTTTGTTGCTCCTCAAAGTAATTTTTTTTTTTTTTTTGTTAGTCCAGTGTGGACCCAGATATCTTTTACTGTTCAAACTTTGGTAGCCTTGGATCAATTGGTGCTCCGTGGGTTGCTTGTGAATAAGGGTTTGGAGGAAGATGTGTTTATTGGGGATTCTTTGATTCAGTTCTATGCAGAATGTGGGGACTTGGATTATGCCTGGAAGGTGTTTGATGAAATGCTTGAGAGGAATACTGTGTTGGGGACTAGTTCTGATTTGCGGTTATGGTTGGAGGGATATGACAAAGGAAGCTTTTTTCTTGTTTTTCGAGATGGTGGCTGCCGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

134

Amino Acids

15.41

Weight (kDa)

4.19

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	146
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 296, 328
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
Alw21I	GWGCWC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	2 cut(s)	27, 393
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	14, 380
BccI	CCATC	2 cut(s)	23, 380
BciT130I	CCWGG	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	398
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	2 cut(s)	28, 394
BlsI	GCNGC	2 cut(s)	29, 395
Bme1390I	CCNGG	2 cut(s)	274, 398
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	274, 398
BpuEI	CTTGAG	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	159, 178
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	159, 178
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	14, 380
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	272, 331
BsmFI	GGGAC	2 cut(s)	272, 331
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	159, 178
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	274
Bst4CI	ACNGT	2 cut(s)	142, 310
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	272, 396
BstV1I	GCAGC	2 cut(s)	14, 380
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	123
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	3 cut(s)	158, 366, 393
CviKI_1	RGCY	3 cut(s)	158, 366, 393
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 246, 270, 340, 354
FaqI	GGGAC	2 cut(s)	272, 331
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	28, 394
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	28, 394
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	28, 394
HapII	CCGG	1 cut(s)	397
Hin1II	CATG	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	2 cut(s)	227, 235
HpaII	CCGG	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	142, 310
HpyCH4V	TGCA	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	85, 180
LpnPI	CCDG	4 cut(s)	129, 140, 259, 286
Lsp1109I	GCAGC	2 cut(s)	14, 380
MaeI	CTAG	1 cut(s)	321
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	91, 167
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	93, 199, 294, 340
MseI	TTAA	1 cut(s)	403
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	274, 398
MunI	CAATTG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	274
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	227, 235
PkrI	GCNGC	2 cut(s)	29, 395
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	2 cut(s)	28, 394
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	274, 398
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	2 cut(s)	282, 368
SinI	GGWCC	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	2 cut(s)	91, 167
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	272, 396
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	142, 310
TaqI	TCGA	1 cut(s)	382
TasI	AATT	2 cut(s)	91, 167
TfiI	GAWTC	2 cut(s)	227, 235
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	2 cut(s)	27, 393
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	123
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.