Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

34810417 .. 34814256

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCAATGCAGTTGGTCCATGGCATTTCCCCTCATATCGTTCATTACGGTTGCATGGTCGATCTACTAGGCCGAGCGGGGCTCTTGGAAGAAGCTGTTGATCTGATAAAGTGCATGCCATTGGAACCCAATGATGTCATTTGGGGCACTCTCTTGGCTGCTTGTCGAACCCACAAAAACGTCGAAATGGCAACATATGCAGCTGAACAGATATCAAAGTTGACCACTCAGAGGACAGGTATTCATGTGCTTCTCTCAAACATATATGCATCGGCTGGGAAATGGGCAGACGTTGCAAAAGTGAGGCTACAATTGAAAGAGAGAGGGATTCAGAAGGTACCCGGATCCAGTTCCATTGAAGTTAATGGAGTGATTCATGAGTTTACCTCCGGTGGTGATACTGATACACACAGAGAGAGGAGCCACATTGTGCTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGTTACGTTCCTGATCTCGACAATGTCCTGGTTGATGTTGATGAGAAGGAGAAAGAATACTTGCTCAGTCGACATAGTGAGAAAGTGGCCATAGCTTTTGGGCTTATAGGTACGGGGCAAGGAGTGCCAATTCGCGTGAAAAGAGAAGAAGAAATACCTGTGCTGTCTGTATGGAGACAGTTAAATGGGTCGCATATGGGCCCTGTGGCTATTGAGAGGTCTGCTCTACCTGCATTTTTTGCCTCTGTTTCATCTATGGATCTGCCTGCGCAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

249

Amino Acids

27.41

Weight (kDa)

5.93

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	58 - 120	3.4e-18	E motif
DYW_deaminase	PF14432	158 - 205	2.1e-12	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	741
Acc36I	ACCTGC	1 cut(s)	709
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	541
AccII	CGCG	1 cut(s)	606
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	339, 352, 738
AcoI	YGGCCR	1 cut(s)	558
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	339, 583
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	316, 359
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	3 cut(s)	95, 203, 566
AluI	AGCT	3 cut(s)	95, 203, 566
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	3 cut(s)	339, 352, 738
AoxI	GGCC	3 cut(s)	70, 558, 670
ApaI	GGGCCC	1 cut(s)	674
ApeKI	GCWGC	2 cut(s)	158, 200
Asp718I	GGTACC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	3 cut(s)	16, 670, 671
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	2 cut(s)	149, 674
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	84, 674
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BbvI	GCAGC	2 cut(s)	145, 212
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	640
BfaI	CTAG	1 cut(s)	68
BfuAI	ACCTGC	1 cut(s)	709
BisI	GCNGC	2 cut(s)	159, 201
BlsI	GCNGC	2 cut(s)	160, 202
Bme1390I	CCNGG	2 cut(s)	342, 500
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	16, 670, 671
BmiI	GGNNCC	5 cut(s)	126, 339, 346, 422, 672
BmrFI	CCNGG	2 cut(s)	342, 500
BmsI	GCATC	2 cut(s)	278, 457
BplI	GAGNNNNNCTC	6 cut(s)	66, 98, 371, 403, 679, 711
BpuMI	CCSGG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	242, 475, 550
BseNI	ACTGG	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	433
BseSI	GKGCMC	2 cut(s)	149, 674
BseXI	GCAGC	2 cut(s)	145, 212
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	3 cut(s)	72, 560, 672
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	2 cut(s)	342, 390
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	640
BsnI	GGCC	3 cut(s)	72, 560, 672
Bsp120I	GGGCCC	1 cut(s)	670
Bsp1286I	GDGCHC	3 cut(s)	84, 149, 674
Bsp143I	GATC	5 cut(s)	61, 100, 344, 484, 730
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	72, 560, 672
BspCNI	CTCAG	3 cut(s)	241, 474, 549
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	5 cut(s)	126, 339, 346, 422, 672
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	3 cut(s)	339, 352, 738
BspT107I	GGYRCC	1 cut(s)	337
BsrBI	CCGCTC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	5 cut(s)	61, 100, 344, 484, 730
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	50, 651
BstAPI	GCANNNNNTGC	4 cut(s)	197, 293, 595, 710
BstC8I	GCNNGC	2 cut(s)	116, 738
BstDEI	CTNAG	3 cut(s)	228, 461, 536
BstDSI	CCRYGG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	5 cut(s)	64, 103, 347, 487, 733
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	5 cut(s)	61, 100, 344, 484, 730
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 293, 439, 595, 701, 710
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	340, 498
BstSLI	GKGCMC	2 cut(s)	149, 674
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	145, 212
BstX2I	RGATCY	2 cut(s)	344, 730
BstYI	RGATCY	2 cut(s)	344, 730
BsuRI	GGCC	3 cut(s)	72, 560, 672
BtgI	CCRYGG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	709
Cac8I	GCNNGC	2 cut(s)	116, 738
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	3 cut(s)	16, 670, 671
Csp6I	GTAC	2 cut(s)	338, 582
CviAII	CATG	5 cut(s)	20, 55, 115, 245, 377
CviQI	GTAC	2 cut(s)	338, 582
DdeI	CTNAG	3 cut(s)	228, 461, 536
DpnI	GATC	5 cut(s)	63, 102, 346, 486, 732
DpnII	GATC	5 cut(s)	61, 100, 344, 484, 730
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	19
Eco24I	GRGCYC	2 cut(s)	84, 674
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	84, 674
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	5 cut(s)	23, 58, 118, 248, 380
FatI	CATG	5 cut(s)	19, 54, 114, 244, 376
FauI	CCCGC	1 cut(s)	70
FauNDI	CATATG	2 cut(s)	196, 666
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	159, 201
FriOI	GRGCYC	2 cut(s)	84, 674
Fsp4HI	GCNGC	2 cut(s)	159, 201
FspBI	CTAG	1 cut(s)	68
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	2 cut(s)	159, 201
GsaI	CCCAGC	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	72, 560, 672
HapII	CCGG	2 cut(s)	342, 390
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	5 cut(s)	23, 58, 118, 248, 380
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	222, 542
HindII	GTYRAC	2 cut(s)	222, 542
HinfI	GANTC	3 cut(s)	328, 373, 459
HpaII	CCGG	2 cut(s)	342, 390
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	3 cut(s)	222, 384, 542
Hpy188I	TCNGA	4 cut(s)	105, 231, 333, 464
Hpy188III	TCNNGA	3 cut(s)	377, 482, 488
Hpy8I	GTNNAC	3 cut(s)	222, 384, 542
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	328, 511
HpyCH4III	ACNGT	2 cut(s)	50, 651
HpyCH4IV	ACGT	3 cut(s)	180, 291, 477
HpyCH4V	TGCA	8 cut(s)	10, 54, 114, 200, 269, 296, 442, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 293, 439, 595, 701, 710
HpyF3I	CTNAG	3 cut(s)	228, 461, 536
HpySE526I	ACGT	3 cut(s)	180, 291, 477
Hsp92II	CATG	5 cut(s)	23, 58, 118, 248, 380
HspAI	GCGC	1 cut(s)	740
KpnI	GGTACC	1 cut(s)	341
Kzo9I	GATC	5 cut(s)	61, 100, 344, 484, 730
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	2 cut(s)	145, 212
LweI	GCATC	2 cut(s)	278, 457
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	3 cut(s)	180, 291, 477
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	5 cut(s)	63, 102, 346, 486, 732
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	5 cut(s)	61, 100, 344, 484, 730
MboII	GAAGA	3 cut(s)	101, 629, 632
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	2 cut(s)	344, 730
MhlI	GDGCHC	3 cut(s)	84, 149, 674
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	2 cut(s)	311, 600
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	1 cut(s)	453
MnlI	CCTC	8 cut(s)	42, 225, 297, 317, 397, 411, 681, 724
Mox20I	TGGCCA	1 cut(s)	560
Mph1103I	ATGCAT	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	2 cut(s)	363, 653
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	342, 390
MspR9I	CCNGG	2 cut(s)	342, 500
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	197, 293, 439, 595, 701, 710
NciI	CCSGG	1 cut(s)	342
NcoI	CCATGG	1 cut(s)	19
NdeI	CATATG	2 cut(s)	196, 666
NdeII	GATC	5 cut(s)	61, 100, 344, 484, 730
NlaIII	CATG	5 cut(s)	23, 58, 118, 248, 380
NlaIV	GGNNCC	5 cut(s)	126, 339, 346, 422, 672
NmeAIII	GCCGAG	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	328, 373
PflFI	GACNNNGTC	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	160, 202
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	5 cut(s)	126, 339, 346, 422, 672
PspOMI	GGGCCC	1 cut(s)	670
PspPI	GGNCC	3 cut(s)	16, 670, 671
PsuI	RGATCY	2 cut(s)	344, 730
PsyI	GACNNNGTC	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	339, 583
RsaNI	GTAC	2 cut(s)	338, 582
SalI	GTCGAC	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	363, 653
SatI	GCNGC	2 cut(s)	159, 201
Sau3AI	GATC	5 cut(s)	61, 100, 344, 484, 730
Sau96I	GGNCC	3 cut(s)	16, 670, 671
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	2 cut(s)	342, 500
SduI	GDGCHC	3 cut(s)	84, 149, 674
SfaNI	GCATC	2 cut(s)	278, 457
SinI	GGWCC	1 cut(s)	16
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	311, 600
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	340, 498
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	50, 651
TaiI	ACGT	3 cut(s)	183, 294, 480
TaqI	TCGA	5 cut(s)	60, 166, 183, 489, 541
TasI	AATT	2 cut(s)	311, 600
TfiI	GAWTC	2 cut(s)	328, 373
Tru1I	TTAA	2 cut(s)	363, 653
Tru9I	TTAA	2 cut(s)	363, 653
TseI	GCWGC	2 cut(s)	158, 200
TspDTI	ATGAA	4 cut(s)	32, 233, 365, 711
Tth111I	GACNNNGTC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.