Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Forward (+)

28549926 .. 28550867

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCCCGAAAAGGGTGTATTGTTCATGTACAATTCTCTCATAAGGGGTGACTCTAGTGCTGGGCTTTGTGACGAGGCTATTGTGCTCTATGTTCACATGGTGCTTCAGGGTGTTTTGCTGGATAAGTTTACATTCCCGCTTGCACTGAGCGCGTACTCAAAGACTCTGGCTTTCTGTGAAGGGGTTCAGCTCCATGGCTCGCTTGTGAAGATGGGTTTCGAGCAAGATGTATTTATTGGGAATCCTTTGATTCATTTCTATGCAGAATGTGGGGACTTGGATTATGCCCACAAAGGTGCTGTTTCTTTGTTTTTGGAGATGGTGGCTGCCGGTGTTAAGCCCAATTCGGTGACTATGGTGTGTGTCATTTCTGCTTGTGCAAAGTTTAAGGATGTTGCGTTGAGTGAGACAGTGTGTGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTTGTTGATATGTATATGAAATGTGGAGCTACAGATGCCGCAAAGCGGCTTTTTGATGAATGTGTGGATAAAAACTTGGTTCTTTACAATACCATTTTGTCAAATTATGTGCGCCAGGGACTGGCTAGTGAAGCAGTGTCTGCCATGGGTCAAATGCTACAACAGGGCCTAAGACCCGACAAGGTTAACATGTTAGCTGCAATTTCAGCTTGCGCACAACCAAGTGATTCTCTCTCAGATGGAATGAGAATGACACAGTGGAGAGCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

246

Amino Acids

26.69

Weight (kDa)

5.35

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 128	1.4e-06	PPR repeat family
PPR_2	PF13041	181 - 218	4.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	682
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	137, 507, 514
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	2 cut(s)	29, 155
AfiI	CCNNNNNNNGG	3 cut(s)	11, 513, 589
AflIII	ACRYGT	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	4 cut(s)	190, 497, 665, 677
AluI	AGCT	4 cut(s)	190, 497, 665, 677
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	401
AlwNI	CAGNNNCTG	2 cut(s)	589, 608
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	2 cut(s)	326, 665
ApoI	RAATTY	1 cut(s)	463
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	3 cut(s)	152, 582, 683
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	59, 361, 472
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	313, 652
BccI	CCATC	3 cut(s)	205, 313, 701
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	3 cut(s)	54, 594, 739
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	4 cut(s)	327, 507, 515, 666
BlsI	GCNGC	4 cut(s)	328, 508, 516, 667
Bme1390I	CCNGG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	193, 583, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 513, 589
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	3 cut(s)	193, 583, 612
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	3 cut(s)	11, 513, 589
BseMII	CTCAG	2 cut(s)	137, 717
BseNI	ACTGG	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	313, 652
BseYI	CCCAGC	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	287, 600
BslI	CCNNNNNNNGG	3 cut(s)	11, 513, 589
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	287, 600
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp1407I	TGTACA	1 cut(s)	27
Bsp19I	CCATGG	2 cut(s)	193, 612
BspACI	CCGC	3 cut(s)	137, 507, 514
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	2 cut(s)	138, 716
BspFNI	CGCG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	193, 583, 612
BssT1I	CCWWGG	2 cut(s)	193, 612
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	412, 726
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	141, 200, 679
BstDEI	CTNAG	3 cut(s)	146, 638, 703
BstDSI	CCRYGG	2 cut(s)	193, 612
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	3 cut(s)	152, 582, 683
BstMAI	GTCTC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 503, 599, 608, 674
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	313, 652
BsuRI	GGCC	1 cut(s)	636
BtgI	CCRYGG	2 cut(s)	193, 612
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	4 cut(s)	143, 417, 609, 731
Cac8I	GCNNGC	3 cut(s)	141, 200, 679
CaiI	CAGNNNCTG	2 cut(s)	589, 608
CfoI	GCGC	3 cut(s)	152, 582, 683
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	634
Csp6I	GTAC	2 cut(s)	28, 154
CviAII	CATG	5 cut(s)	25, 97, 194, 613, 658
CviQI	GTAC	2 cut(s)	28, 154
DdeI	CTNAG	3 cut(s)	146, 638, 703
DraIII	CACNNNGTG	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	193, 612
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	2 cut(s)	193, 612
ErhI	CCWWGG	2 cut(s)	193, 612
FaeI	CATG	5 cut(s)	28, 100, 197, 616, 661
FaqI	GGGAC	2 cut(s)	287, 600
FatI	CATG	5 cut(s)	24, 96, 193, 612, 657
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	327, 507, 515, 666
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	327, 507, 515, 666
FspBI	CTAG	3 cut(s)	54, 594, 739
FspI	TGCGCA	1 cut(s)	682
GlaI	GCGC	3 cut(s)	151, 581, 682
GluI	GCNGC	4 cut(s)	327, 507, 515, 666
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	330
HhaI	GCGC	3 cut(s)	152, 582, 683
Hin1II	CATG	5 cut(s)	28, 100, 197, 616, 661
Hin6I	GCGC	3 cut(s)	150, 580, 681
HinP1I	GCGC	3 cut(s)	150, 580, 681
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HinfI	GANTC	7 cut(s)	50, 163, 241, 250, 431, 438, 695
HpaI	GTTAAC	1 cut(s)	655
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	3 cut(s)	59, 361, 472
Hpy166II	GTNNAC	3 cut(s)	94, 129, 655
Hpy188I	TCNGA	1 cut(s)	706
Hpy188III	TCNNGA	2 cut(s)	435, 442
Hpy8I	GTNNAC	3 cut(s)	94, 129, 655
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	412, 726
HpyCH4V	TGCA	4 cut(s)	143, 263, 380, 668
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 503, 599, 608, 674
HpyF3I	CTNAG	3 cut(s)	146, 638, 703
Hsp92II	CATG	5 cut(s)	28, 100, 197, 616, 661
HspAI	GCGC	3 cut(s)	150, 580, 681
KspAI	GTTAAC	1 cut(s)	655
LmnI	GCTCC	2 cut(s)	195, 494
Lsp1109I	GCAGC	2 cut(s)	313, 652
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	54, 594, 739
MaeIII	GTNAC	3 cut(s)	47, 68, 349
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	31, 343, 463, 571, 669
MlyI	GAGTC	4 cut(s)	44, 157, 432, 440
MnlI	CCTC	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	336, 387, 654
MslI	CAYNNNNRTG	2 cut(s)	258, 294
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	584
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	5 cut(s)	149, 503, 599, 608, 674
NcoI	CCATGG	2 cut(s)	193, 612
NlaIII	CATG	5 cut(s)	28, 100, 197, 616, 661
NmuCI	GTSAC	3 cut(s)	47, 68, 349
NsbI	TGCGCA	1 cut(s)	682
NspI	RCATGY	1 cut(s)	661
OliI	CACNNNNGTG	1 cut(s)	294
PciI	ACATGT	1 cut(s)	657
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	241, 250, 695
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	4 cut(s)	328, 508, 516, 667
PleI	GAGTC	4 cut(s)	44, 157, 432, 439
PpsI	GAGTC	4 cut(s)	44, 157, 432, 439
PscI	ACATGT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	634
PstNI	CAGNNNCTG	2 cut(s)	589, 608
RsaI	GTAC	2 cut(s)	29, 155
RsaNI	GTAC	2 cut(s)	28, 154
RseI	CAYNNNNRTG	2 cut(s)	258, 294
SaqAI	TTAA	3 cut(s)	336, 387, 654
SatI	GCNGC	4 cut(s)	327, 507, 515, 666
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	4 cut(s)	44, 157, 432, 440
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	192, 298, 499, 654, 667, 679, 740
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	2 cut(s)	258, 294
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	5 cut(s)	31, 343, 463, 571, 669
SsiI	CCGC	3 cut(s)	137, 507, 514
SspMI	CTAG	3 cut(s)	54, 594, 739
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	2 cut(s)	193, 612
TaaI	ACNGT	2 cut(s)	412, 726
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	31, 343, 463, 571, 669
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	509, 517
TfiI	GAWTC	3 cut(s)	241, 250, 695
Tru1I	TTAA	3 cut(s)	336, 387, 654
Tru9I	TTAA	3 cut(s)	336, 387, 654
TscAI	CASTG	4 cut(s)	150, 417, 609, 731
TseFI	GTSAC	3 cut(s)	47, 68, 349
TseI	GCWGC	2 cut(s)	326, 665
Tsp45I	GTSAC	3 cut(s)	47, 68, 349
TspDTI	ATGAA	4 cut(s)	13, 242, 500, 540
TspRI	CASTG	4 cut(s)	150, 417, 609, 731
Van91I	CCANNNNNTGG	1 cut(s)	589
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	3 cut(s)	54, 594, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.