Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

2480396 .. 2481045

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGAAGGAGTTCAGCTCCATTATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGGACTCGGATTATGCCCAGAATGTGTTTGATGAAATGCTTGAGAGAAACACTGTGCCGTGGACTAGTTTGATTTTGTGGTTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

56

Amino Acids

6.59

Weight (kDa)

4.05

Isoelectric Point (pI)

64.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	52
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	132
CviJI	RGCY	1 cut(s)	15
CviKI_1	RGCY	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	52
FaiI	YATR	4 cut(s)	23, 72, 96, 166
FaqI	GGGAC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	147
HinfI	GANTC	2 cut(s)	61, 86
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	1 cut(s)	113
MaeI	CTAG	1 cut(s)	147
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	69
SchI	GAGTC	1 cut(s)	80
SetI	ASST	1 cut(s)	17
SgeI	CNNG	5 cut(s)	100, 112, 134, 153, 159
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	17, 53, 129
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.