Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000589

Physical Location & Seq

Genomic Coordinates Reverse (-)

37572520 .. 37579360

Gene Structure 6841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGCCGCAATGCTTCAGCTGAGTCCTCTGGTCTCAGCCACCCCAAGTTTCATAGCTCCCACTAACCAAAACGAACCCAAAGCCATAGCCAAGGACACTTCCCGAACTGGGTCACTAAGAAACTGCAAAACCATAAACCAAGTGAAGCAACTTCACTGTCACATCACTAAGACAGGCTTCAGTCACACACCCTCTAATGTCACCAAGCTAATTAGCGCATGCGCCGAGATGGGCACCTTCGAAAGCTTAGATTATGCCCGGAAAGCCTTTAACTTGTTTCTTGAAGAAGAAGAAACTAAGGGTGTATTGTTCATGTATAATTCTCTCATAAGGGGTTACTCTAGTGCTGGGCTTTGTGACGAGGCTATTGGGCTTTATGTTCAGATGGTGCTTCAGGGTGTTTTGCCGGATAAGTTCACATTTCCGTTTGCACTGAGCGCGTGCTCAAAGATTGTGGCTTTCTGTGAAGGTGTTCAGCTGCACGGGTCGCTTGTGAAGATGGGTTTGGAGGAAGATGTGTTTATTGGGAATTCTTTGATTCATTTCTATGCAGAATGTGGGCACTTGGATTATGCCCAGAAGGTGTTTGATGAAATGCTTGAGAGAAACATCGTGTCGTGGACTAGTTTGATTTGTGGCTATGGTAGGAGGAATATGCCAAAGCAGGCTGTTTCTTTGTTTTTCGAGATGGTGGCTGCCGGTGTTAAGCCCAATTCGGTGACTATGGTGTGTGTCATTTCTGCTTGTGCAAAGTTGAAGGATGTTGCGTTGAGTGAGAGAGTGTGCGCTTACATTGGGGAGTCTGGACTCAAGACTAATATGCTTATGGTGAATTCACTTGTTGATATGTATATGAAATGTGGAGCTACTGATGCCGCAAAGCGGCTTTTTGATGAATGTGTGGATAAAAACTTGGTTCTTTACAACACGATTTTGTCAAATTATGTGCGCCAGGGACTGGCTAGTGAAGCAGTTTCTGTCGTGGGTGAAATGCTACAACAGGGCCTAAGACCCGACAAGGTTACCATGTTAGCTGCAATTTCAGCTTGCGCACAGCTAAGTGATTCTCTCTCAGGTAAGTGTTGCCATGGTTATGTTCTAAGGAATGGACTAGAAGGTTGGGATACCATTTGTAATGCCATGATTGACATGTACATGAAGTGCGGCGAACAAGAGATGGCCTGCATAATTTTTGACAATATGTCAAATAAGACTGTAGTATCATGGAACTCTTTGATTTCTGGTTTCATAAGAAGTGGCGATGTGAAGTCAGCTTGGGAAATTTTCAATGAGATGCCTAAGAGTGATCTCGTCTCTTGGAACAGTATGATTGGTGCTCTGGTCCAAGAGAGCAAGTTTGAGGAAGCAATTGAACTTTTCCGGGAGATGCAGACCGAGGGAATAAAAGGAGATAGGGTGACCATGGTGGAGGTTGCATCTGCCTGTGGATATTTGGGAGCTCTTGATCTTGCAAAGTGGACTCATGCTTATATTGAAAAAAGCGAAATCAAATGTGATACGCGGCTTGGGACAGCCTTAGTTGACATGTTTGCTAAATGTGGTGATCCTCAAAGTGCAATGAAAGTGTTCAATACAATGGCAGGGAGAGATGTTTCTGCTTGGACTGCAGCCATCAGAGCAATGGCCATGGAGGGGAATGGGAAACGAGCTCTAGAACTTTTTGATGACATGCTTAAGCAAGGGGTGAAACCAGATGAAGTAGTCTTTGTGGCGGTACTAACAGCGTGCAGCCATGTTGGTCTTTTGGAACAAGGGCGGAACATTTTTATGTCAATGCAGTTGGTCCATGGCATTTCCCCTCATATCGTTCATTACGGTTGCATGGTCGATCTACTAGGCCGAGCCGGGCTCTTGGAAGAAGCTGTTGATCTGATAAATTGCATGCCAATGGAACCCAATGATGTCATTTGGGGCACTCTCTTGGCTGCTTGTCGAACCCACAAAAACGTTGAAATGGCAACATATGCAGCTGAACAGATATCAAAGTTGACCACTCAGAGGACAGGTATTCATGTGCTTCTCTCAAACATATATGCATCGGCTGGGAAATGGGCAGACGTTGCAAAAGTGAGGCTACAATTGAAAGAGAGAGGGATTCAGAAGGTACCCGGATCCAGTTCCATTGAAGTTAATGGAGTGATTCATGAGTTTACCTCCGGTGGTGATACTGATACACACACAGAGAGGAGCCATATTGCGTTGATGTTGCAAGAAATAAACAGCAGACTCAGAGATGCTGGTTACGTTCCTGATCTCGACAATGTCCTGGTTGATGTTGATGAGAAGGAGAAAGAGTACTTGCTCAGTCGACATAGTGAGAAAGTGGCCATAGCTTTTGGGCTTATAGGTACGGGGCAAGGAGTGCCAATTCGCGTGGTGAAGAATCTGAGAATGTGTTCTGATTGTCACTCTTTTGCCAAATTAGTATCAAGAATATATGACAGGGAAATTATTGTTCGAGATAACAACAGGTTCCATTTCTTTAGTCAGGGCCTGTGCTCTTGCAGTGATTACTGTTATGAGTTACTTTGCAAACTGATACTTATAAGTCACTCTATTTTTTCAGGAAATACACATTCCTTCTGCACCCTGGAAGTTAGATCCTGTCAGTTCAATTTACATGCAAAGCATACTTTCAGTTTAAGAAAGGACGATTTGAATAAGGAGATGAAGAACTCGGTCATGAGATTTAAGACTAGTATAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

909

Amino Acids

100.54

Weight (kDa)

6.21

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	104 - 150	1e-07	PPR repeat family
PPR	PF01535	104 - 134	1.1e-06	PPR repeat
PPR_2	PF13041	202 - 251	3.4e-12	PPR repeat family
PPR	PF01535	205 - 235	1.1e-06	PPR repeat
PPR_2	PF13041	304 - 351	2.9e-08	PPR repeat family
PPR_2	PF13041	405 - 435	1.4e-08	PPR repeat family
PPR_1	PF12854	405 - 432	4.8e-06	PPR repeat
PPR	PF01535	407 - 436	1.2e-07	PPR repeat
PPR_2	PF13041	436 - 475	3.5e-09	PPR repeat family
PPR	PF01535	438 - 468	8.3e-09	PPR repeat
PPR_2	PF13041	536 - 584	6.7e-09	PPR repeat family
E_motif	PF20431	654 - 716	2.3e-17	E motif
DYW_deaminase	PF14432	754 - 845	2e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22690 AT3G22690 AT3G22690
fragaria_vesca	FvH4_4g12100 FvH4_4g12100 FvH4_4g12100
malus_domestica	MD07G1198500.v1.1 MD12G1181700.v1.1
prunus_persica	Prupe.1G018800_v2.0.a1
pyrus_communis	pycom07g16490
rosa_chinensis	RchiOBHm_Chr1g0328851 RchiOBHm_Chr1g0329061 RchiOBHm_Chr1g0329101 RchiOBHm_Chr1g0329141 RchiOBHm_Chr2g0124781 RchiOBHm_Chr3g0482411 RchiOBHm_Chr3g0482461 RchiOBHm_Chr4g0386511 RchiOBHm_Chr4g0386531 RchiOBHm_Chr4g0386651 RchiOBHm_Chr4g0386671 RchiOBHm_Chr4g0386751 RchiOBHm_Chr4g0386781 RchiOBHm_Chr4g0386861 RchiOBHm_Chr4g0386891 RchiOBHm_Chr4g0386911 RchiOBHm_Chr4g0386991 RchiOBHm_Chr4g0387041 RchiOBHm_Chr4g0387171 RchiOBHm_Chr4g0387241 RchiOBHm_Chr4g0387301 RchiOBHm_Chr4g0387341 RchiOBHm_Chr4g0387441 RchiOBHm_Chr4g0388061 RchiOBHm_Chr4g0389241 RchiOBHm_Chr4g0389361
rosa_laevigata	RLG00000010137 RLG00000010138 RLG00000010145 RLG00000010146 RLG00000018820 RLG00000023352 RLG00000029915
rosa_multiflora	Rmu_co8009444.1_g000001 Rmu_co8455349.1_g000001 Rmu_sc0001375.1_g000001 Rmu_sc0001942.1_g000049 Rmu_sc0001942.1_g000077 Rmu_sc0002939.1_g000001 Rmu_sc0003413.1_g000068 Rmu_sc0003413.1_g000075 Rmu_sc0006571.1_g000008 Rmu_sc0006571.1_g000013 Rmu_sc0006571.1_g000016 Rmu_sc0006648.1_g000004 Rmu_sc0008380.1_g000005 Rmu_sc0009161.1_g000006 Rmu_sc0009161.1_g000007 Rmu_sc0010272.1_g000019 Rmu_sc0011657.1_g000016 Rmu_sc0028698.1_g000001
rosa_roxburghii	Rroxscaffold_2G00119680 Rroxscaffold_2G00119690 Rroxscaffold_5G00334120
rosa_rugosa	Rorug02G0252500 Rorug02G0252500 Rorug03G0196200 Rorug03G0307500 Rorug03G0307800 Rorug03G0308200 Rorug03G0308400 Rorug03G0365200.1 Rorug07G0142900
rosa_samantha	Rh2AG312000 Rh2BG320300 Rh2CG300300 Rh4DG011500 Rh4DG020300
rosa_wichuraiana	Rw2G025200 Rw3G022270 Rw4G001010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2567
Acc16I	TGCGCA	1 cut(s)	1051
Acc65I	GGTACC	1 cut(s)	2125
AccB1I	GGYRCC	2 cut(s)	233, 2125
AccB7I	CCANNNNNTGG	1 cut(s)	958
AccI	GTMKAC	1 cut(s)	2329
AccII	CGCG	3 cut(s)	440, 1522, 2394
AciI	CCGC	7 cut(s)	6, 876, 883, 1164, 1522, 1733, 1777
AclI	AACGTT	1 cut(s)	1968
AclWI	GGATC	4 cut(s)	1559, 2127, 2140, 2616
AcoI	YGGCCR	3 cut(s)	3, 1644, 2346
AcsI	RAATTY	3 cut(s)	529, 832, 1281
AcuI	CTGAAG	2 cut(s)	163, 377
AfaI	GTAC	5 cut(s)	1154, 1737, 2127, 2318, 2371
AfiI	CCNNNNNNNGG	5 cut(s)	108, 882, 958, 1653, 2019
AflII	CTTAAG	1 cut(s)	1694
AflIII	ACRYGT	2 cut(s)	1149, 1545
AhdI	GACNNNNNGTC	1 cut(s)	1201
AhlI	ACTAGT	2 cut(s)	623, 2717
AjnI	CCWGG	3 cut(s)	951, 2286, 2610
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
Alw21I	GWGCWC	5 cut(s)	446, 1339, 1462, 1672, 2522
Alw26I	GTCTC	2 cut(s)	37, 1318
AlwI	GGATC	4 cut(s)	1559, 2127, 2140, 2616
AlwNI	CAGNNNCTG	3 cut(s)	958, 977, 2515
AoxI	GGCC	7 cut(s)	3, 1003, 1179, 1644, 1858, 2346, 2512
ApeKI	GCWGC	7 cut(s)	478, 695, 1034, 1628, 1749, 1946, 1988
ApoI	RAATTY	3 cut(s)	529, 832, 1281
Asp700I	GAANNNNTTC	3 cut(s)	471, 1586, 2416
Asp718I	GGTACC	1 cut(s)	2125
AspLEI	GCGC	6 cut(s)	218, 224, 440, 788, 951, 1052
AspS9I	GGNCC	4 cut(s)	1003, 1342, 1804, 2512
AsuC2I	CCSGG	4 cut(s)	259, 1382, 1867, 2130
AsuHPI	GGTGA	9 cut(s)	193, 730, 841, 998, 1429, 1574, 1717, 2195, 2410
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	1342, 1804
BaeGI	GKGCMC	3 cut(s)	236, 564, 1937
BaeI	ACNNNNGTAYC	2 cut(s)	1203, 1236
BalI	TGGCCA	2 cut(s)	1646, 2348
BamHI	GGATCC	1 cut(s)	2132
BanI	GGYRCC	2 cut(s)	233, 2125
BanII	GRGCYC	3 cut(s)	1462, 1672, 1872
Bbv12I	GWGCWC	5 cut(s)	446, 1339, 1462, 1672, 2522
BbvI	GCAGC	7 cut(s)	465, 682, 1021, 1640, 1761, 1933, 2000
BccI	CCATC	6 cut(s)	223, 379, 493, 682, 1171, 1640
BciT130I	CCWGG	3 cut(s)	953, 2288, 2612
BciVI	GTATCC	1 cut(s)	1117
BcnI	CCSGG	4 cut(s)	259, 1382, 1867, 2130
BcoDI	GTCTC	2 cut(s)	37, 1318
BcuI	ACTAGT	2 cut(s)	623, 2717
BfaI	CTAG	7 cut(s)	342, 624, 963, 1112, 1673, 1856, 2718
BfmI	CTRYAG	2 cut(s)	1215, 1626
BfrI	CTTAAG	1 cut(s)	1694
BfuI	GTATCC	1 cut(s)	1117
BmcAI	AGTACT	1 cut(s)	2318
Bme1390I	CCNGG	7 cut(s)	259, 953, 1382, 1867, 2130, 2288, 2612
Bme18I	GGWCC	2 cut(s)	1342, 1804
BmeRI	GACNNNNNGTC	1 cut(s)	1201
BmgT120I	GGNCC	4 cut(s)	1003, 1342, 1804, 2512
BmiI	GGNNCC	6 cut(s)	235, 1914, 2127, 2134, 2210, 2495
BmrFI	CCNGG	7 cut(s)	259, 953, 1382, 1867, 2130, 2288, 2612
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	6 cut(s)	862, 1284, 1377, 1445, 2066, 2245
BmuI	ACTGGG	1 cut(s)	117
BplI	GAGNNNNNCTC	4 cut(s)	1854, 1886, 2159, 2191
Bpu14I	TTCGAA	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	620, 794
BpuMI	CCSGG	4 cut(s)	259, 1382, 1867, 2130
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	8 cut(s)	90, 952, 1087, 1395, 1422, 1647, 1807, 2610
BsaWI	WCCGGW	1 cut(s)	2177
BsaXI	ACNNNNNCTCC	4 cut(s)	1401, 1431, 2300, 2330
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 882, 958, 1653, 2019
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	3 cut(s)	112, 963, 2136
Bse3DI	GCAATG	3 cut(s)	15, 1584, 1647
BseBI	CCWGG	3 cut(s)	953, 2288, 2612
BseDI	CCNNGG	8 cut(s)	90, 952, 1087, 1395, 1422, 1647, 1807, 2610
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	5 cut(s)	108, 882, 958, 1653, 2019
BseMI	GCAATG	3 cut(s)	15, 1584, 1647
BseMII	CTCAG	8 cut(s)	11, 48, 425, 1086, 2030, 2263, 2338, 2399
BseNI	ACTGG	3 cut(s)	112, 963, 2136
BseRI	GAGGAG	1 cut(s)	2221
BseSI	GKGCMC	3 cut(s)	236, 564, 1937
BseXI	GCAGC	7 cut(s)	465, 682, 1021, 1640, 1761, 1933, 2000
BseYI	CCCAGC	2 cut(s)	347, 2063
BsgI	GTGCAG	3 cut(s)	464, 1768, 2590
Bsh1236I	CGCG	3 cut(s)	440, 1522, 2394
BshFI	GGCC	7 cut(s)	5, 1005, 1181, 1646, 1860, 2348, 2514
BshNI	GGYRCC	2 cut(s)	233, 2125
BsiHKAI	GWGCWC	5 cut(s)	446, 1339, 1462, 1672, 2522
BsiSI	CCGG	7 cut(s)	259, 407, 699, 1381, 1866, 2130, 2178
BslFI	GGGAC	2 cut(s)	969, 1543
BslI	CCNNNNNNNGG	5 cut(s)	108, 882, 958, 1653, 2019
BsmAI	GTCTC	2 cut(s)	37, 1318
BsmBI	CGTCTC	1 cut(s)	1318
BsmFI	GGGAC	2 cut(s)	969, 1543
BsnI	GGCC	7 cut(s)	5, 1005, 1181, 1646, 1860, 2348, 2514
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	9 cut(s)	236, 446, 564, 1339, 1462, 1672, 1872, 1937, 2522
Bsp1407I	TGTACA	1 cut(s)	1152
Bsp143I	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
Bsp19I	CCATGG	4 cut(s)	1087, 1422, 1647, 1807
BspACI	CCGC	7 cut(s)	6, 876, 883, 1164, 1522, 1733, 1777
BspANI	GGCC	7 cut(s)	5, 1005, 1181, 1646, 1860, 2348, 2514
BspCNI	CTCAG	8 cut(s)	12, 47, 426, 1085, 2029, 2262, 2337, 2400
BspFNI	CGCG	3 cut(s)	440, 1522, 2394
BspHI	TCATGA	2 cut(s)	2164, 2703
BspLI	GGNNCC	6 cut(s)	235, 1914, 2127, 2134, 2210, 2495
BspMAI	CTGCAG	1 cut(s)	1630
BspPI	GGATC	4 cut(s)	1559, 2127, 2140, 2616
BspT104I	TTCGAA	1 cut(s)	240
BspT107I	GGYRCC	2 cut(s)	233, 2125
BspTI	CTTAAG	1 cut(s)	1694
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	3 cut(s)	15, 1584, 1647
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	1152
BsrI	ACTGG	3 cut(s)	112, 963, 2136
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	8 cut(s)	90, 952, 1087, 1395, 1422, 1647, 1807, 2610
BssMI	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
BssT1I	CCWWGG	5 cut(s)	90, 1087, 1422, 1647, 1807
Bst2UI	CCWGG	3 cut(s)	953, 2288, 2612
Bst4CI	ACNGT	5 cut(s)	158, 1216, 1325, 1838, 2537
BstAFI	CTTAAG	1 cut(s)	1694
BstAPI	GCANNNNNTGC	3 cut(s)	1985, 2081, 2383
BstAUI	TGTACA	1 cut(s)	1152
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	7 cut(s)	220, 442, 666, 1048, 1183, 1747, 1904
BstDSI	CCRYGG	4 cut(s)	1087, 1422, 1647, 1807
BstEII	GGTNACC	2 cut(s)	1021, 1417
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	3 cut(s)	440, 1522, 2394
BstHHI	GCGC	6 cut(s)	218, 224, 440, 788, 951, 1052
BstKTI	GATC	8 cut(s)	1309, 1468, 1567, 1852, 1891, 2135, 2275, 2624
BstMAI	GTCTC	2 cut(s)	37, 1318
BstMBI	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
BstNI	CCWGG	3 cut(s)	953, 2288, 2612
BstNSI	RCATGY	6 cut(s)	222, 1153, 1549, 1693, 1906, 2645
BstPI	GGTNACC	2 cut(s)	1021, 1417
BstSCI	CCNGG	7 cut(s)	257, 951, 1380, 1865, 2128, 2286, 2610
BstSFI	CTRYAG	2 cut(s)	1215, 1626
BstSLI	GKGCMC	3 cut(s)	236, 564, 1937
BstUI	CGCG	3 cut(s)	440, 1522, 2394
BstV1I	GCAGC	7 cut(s)	465, 682, 1021, 1640, 1761, 1933, 2000
BstX2I	RGATCY	2 cut(s)	2132, 2621
BstYI	RGATCY	2 cut(s)	2132, 2621
BsuI	GTATCC	1 cut(s)	1117
BsuRI	GGCC	7 cut(s)	5, 1005, 1181, 1646, 1860, 2348, 2514
BtgI	CCRYGG	4 cut(s)	1087, 1422, 1647, 1807
BtgZI	GCGATG	1 cut(s)	1275
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	1 cut(s)	2533
BtsIMutI	CAGTG	3 cut(s)	154, 431, 2533
Cac8I	GCNNGC	7 cut(s)	220, 442, 666, 1048, 1183, 1747, 1904
CaiI	CAGNNNCTG	3 cut(s)	958, 977, 2515
CciI	TCATGA	2 cut(s)	2164, 2703
CfoI	GCGC	6 cut(s)	218, 224, 440, 788, 951, 1052
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	1003, 1342, 1804, 2512
Csp6I	GTAC	5 cut(s)	1153, 1736, 2126, 2317, 2370
CspCI	CAANNNNNGTGG	4 cut(s)	435, 470, 2376, 2411
CviQI	GTAC	5 cut(s)	1153, 1736, 2126, 2317, 2370
DpnI	GATC	8 cut(s)	1308, 1467, 1566, 1851, 1890, 2134, 2274, 2623
DpnII	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
DriI	GACNNNNNGTC	1 cut(s)	1201
EaeI	YGGCCR	3 cut(s)	3, 1644, 2346
Eam1105I	GACNNNNNGTC	1 cut(s)	1201
EciI	GGCGGA	1 cut(s)	1792
Ecl136II	GAGCTC	2 cut(s)	1460, 1670
Eco130I	CCWWGG	5 cut(s)	90, 1087, 1422, 1647, 1807
Eco24I	GRGCYC	3 cut(s)	1462, 1672, 1872
Eco31I	GGTCTC	1 cut(s)	37
Eco32I	GATATC	1 cut(s)	2001
Eco47I	GGWCC	2 cut(s)	1342, 1804
Eco53kI	GAGCTC	2 cut(s)	1460, 1670
Eco57I	CTGAAG	2 cut(s)	163, 377
Eco91I	GGTNACC	2 cut(s)	1021, 1417
EcoICRI	GAGCTC	2 cut(s)	1460, 1670
EcoO109I	RGGNCCY	2 cut(s)	1003, 2512
EcoO65I	GGTNACC	2 cut(s)	1021, 1417
EcoRI	GAATTC	2 cut(s)	529, 832
EcoRII	CCWGG	3 cut(s)	951, 2286, 2610
EcoRV	GATATC	1 cut(s)	2001
EcoT14I	CCWWGG	5 cut(s)	90, 1087, 1422, 1647, 1807
EcoT22I	ATGCAT	1 cut(s)	2059
EcoT38I	GRGCYC	3 cut(s)	1462, 1672, 1872
ErhI	CCWWGG	5 cut(s)	90, 1087, 1422, 1647, 1807
Esp3I	CGTCTC	1 cut(s)	1318
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	2 cut(s)	969, 1543
FauNDI	CATATG	1 cut(s)	1984
FblI	GTMKAC	1 cut(s)	2329
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	3 cut(s)	1462, 1672, 1872
FspBI	CTAG	7 cut(s)	342, 624, 963, 1112, 1673, 1856, 2718
FspI	TGCGCA	1 cut(s)	1051
GlaI	GCGC	6 cut(s)	217, 223, 439, 787, 950, 1051
GsaI	CCCAGC	2 cut(s)	351, 2067
HaeIII	GGCC	7 cut(s)	5, 1005, 1181, 1646, 1860, 2348, 2514
HapII	CCGG	7 cut(s)	259, 407, 699, 1381, 1866, 2130, 2178
HhaI	GCGC	6 cut(s)	218, 224, 440, 788, 951, 1052
Hin6I	GCGC	6 cut(s)	216, 222, 438, 786, 949, 1050
HinP1I	GCGC	6 cut(s)	216, 222, 438, 786, 949, 1050
HincII	GTYRAC	3 cut(s)	1543, 2010, 2330
HindII	GTYRAC	3 cut(s)	1543, 2010, 2330
HindIII	AAGCTT	1 cut(s)	244
HpaII	CCGG	7 cut(s)	259, 407, 699, 1381, 1866, 2130, 2178
HphI	GGTGA	9 cut(s)	193, 730, 841, 998, 1429, 1574, 1717, 2195, 2410
Hpy166II	GTNNAC	7 cut(s)	417, 621, 1479, 1543, 2010, 2172, 2330
Hpy188I	TCNGA	8 cut(s)	384, 1637, 1893, 2019, 2121, 2252, 2409, 2422
Hpy8I	GTNNAC	7 cut(s)	417, 621, 1479, 1543, 2010, 2172, 2330
HpyAV	CCTTC	8 cut(s)	247, 461, 574, 751, 1109, 2116, 2299, 2611
HpyCH4III	ACNGT	5 cut(s)	158, 1216, 1325, 1838, 2537
HpyCH4IV	ACGT	3 cut(s)	1968, 2079, 2265
HpySE526I	ACGT	3 cut(s)	1968, 2079, 2265
HspAI	GCGC	6 cut(s)	216, 222, 438, 786, 949, 1050
KpnI	GGTACC	1 cut(s)	2129
Kzo9I	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
LmnI	GCTCC	4 cut(s)	61, 863, 1457, 2208
Lsp1109I	GCAGC	7 cut(s)	465, 682, 1021, 1640, 1761, 1933, 2000
LweI	GCATC	6 cut(s)	862, 1284, 1377, 1445, 2066, 2245
MaeI	CTAG	7 cut(s)	342, 624, 963, 1112, 1673, 1856, 2718
MaeII	ACGT	3 cut(s)	1968, 2079, 2265
MalI	GATC	8 cut(s)	1308, 1467, 1566, 1851, 1890, 2134, 2274, 2623
MboI	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
MboII	GAAGA	8 cut(s)	296, 299, 302, 508, 524, 1889, 2413, 2704
MfeI	CAATTG	2 cut(s)	1368, 2099
MflI	RGATCY	2 cut(s)	2132, 2621
MhlI	GDGCHC	9 cut(s)	236, 446, 564, 1339, 1462, 1672, 1872, 1937, 2522
MlsI	TGGCCA	2 cut(s)	1646, 2348
MluNI	TGGCCA	2 cut(s)	1646, 2348
MlyI	GAGTC	5 cut(s)	31, 801, 809, 1474, 2241
Mox20I	TGGCCA	2 cut(s)	1646, 2348
Mph1103I	ATGCAT	1 cut(s)	2059
MroXI	GAANNNNTTC	3 cut(s)	471, 1586, 2416
MscI	TGGCCA	2 cut(s)	1646, 2348
MseI	TTAA	6 cut(s)	270, 705, 1695, 2151, 2663, 2712
MslI	CAYNNNNRTG	5 cut(s)	546, 1092, 1154, 1787, 1907
Msp20I	TGGCCA	2 cut(s)	1646, 2348
MspA1I	CMGCKG	3 cut(s)	19, 478, 1991
MspCI	CTTAAG	1 cut(s)	1694
MspI	CCGG	7 cut(s)	259, 407, 699, 1381, 1866, 2130, 2178
MspR9I	CCNGG	7 cut(s)	259, 953, 1382, 1867, 2130, 2288, 2612
MunI	CAATTG	2 cut(s)	1368, 2099
MvaI	CCWGG	3 cut(s)	953, 2288, 2612
MvnI	CGCG	3 cut(s)	440, 1522, 2394
NciI	CCSGG	4 cut(s)	259, 1382, 1867, 2130
NcoI	CCATGG	4 cut(s)	1087, 1422, 1647, 1807
NdeI	CATATG	1 cut(s)	1984
NdeII	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
NlaIV	GGNNCC	6 cut(s)	235, 1914, 2127, 2134, 2210, 2495
NmeAIII	GCCGAG	2 cut(s)	250, 1886
NmuCI	GTSAC	9 cut(s)	111, 158, 182, 199, 356, 718, 1417, 2426, 2570
NsbI	TGCGCA	1 cut(s)	1051
NsiI	ATGCAT	1 cut(s)	2059
NspI	RCATGY	6 cut(s)	222, 1153, 1549, 1693, 1906, 2645
NspV	TTCGAA	1 cut(s)	240
PaeI	GCATGC	2 cut(s)	222, 1906
PagI	TCATGA	2 cut(s)	2164, 2703
PciI	ACATGT	2 cut(s)	1149, 1545
PdmI	GAANNNNTTC	3 cut(s)	471, 1586, 2416
PfeI	GAWTC	5 cut(s)	538, 1064, 2116, 2161, 2404
PflFI	GACNNNGTC	1 cut(s)	2282
PflMI	CCANNNNNTGG	1 cut(s)	958
PfoI	TCCNGGA	1 cut(s)	1380
PleI	GAGTC	5 cut(s)	30, 801, 808, 1474, 2241
PpsI	GAGTC	5 cut(s)	30, 801, 808, 1474, 2241
PscI	ACATGT	2 cut(s)	1149, 1545
PsiI	TTATAA	1 cut(s)	2567
Psp124BI	GAGCTC	2 cut(s)	1462, 1672
Psp1406I	AACGTT	1 cut(s)	1968
Psp6I	CCWGG	3 cut(s)	951, 2286, 2610
PspEI	GGTNACC	2 cut(s)	1021, 1417
PspFI	CCCAGC	2 cut(s)	347, 2063
PspGI	CCWGG	3 cut(s)	951, 2286, 2610
PspN4I	GGNNCC	6 cut(s)	235, 1914, 2127, 2134, 2210, 2495
PspPI	GGNCC	4 cut(s)	1003, 1342, 1804, 2512
PstI	CTGCAG	1 cut(s)	1630
PstNI	CAGNNNCTG	3 cut(s)	958, 977, 2515
PsuI	RGATCY	2 cut(s)	2132, 2621
PsyI	GACNNNGTC	1 cut(s)	2282
PvuII	CAGCTG	3 cut(s)	19, 478, 1991
RsaI	GTAC	5 cut(s)	1154, 1737, 2127, 2318, 2371
RsaNI	GTAC	5 cut(s)	1153, 1736, 2126, 2317, 2370
RseI	CAYNNNNRTG	5 cut(s)	546, 1092, 1154, 1787, 1907
SacI	GAGCTC	2 cut(s)	1462, 1672
SalI	GTCGAC	1 cut(s)	2328
SaqAI	TTAA	6 cut(s)	270, 705, 1695, 2151, 2663, 2712
Sau3AI	GATC	8 cut(s)	1306, 1465, 1564, 1849, 1888, 2132, 2272, 2621
Sau96I	GGNCC	4 cut(s)	1003, 1342, 1804, 2512
ScaI	AGTACT	1 cut(s)	2318
SchI	GAGTC	5 cut(s)	31, 801, 809, 1474, 2241
ScrFI	CCNGG	7 cut(s)	259, 953, 1382, 1867, 2130, 2288, 2612
SduI	GDGCHC	9 cut(s)	236, 446, 564, 1339, 1462, 1672, 1872, 1937, 2522
SfaNI	GCATC	6 cut(s)	862, 1284, 1377, 1445, 2066, 2245
SfcI	CTRYAG	2 cut(s)	1215, 1626
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	2 cut(s)	1342, 1804
SmiMI	CAYNNNNRTG	5 cut(s)	546, 1092, 1154, 1787, 1907
SmlI	CTYRAG	3 cut(s)	599, 809, 1694
SmoI	CTYRAG	3 cut(s)	599, 809, 1694
SpeI	ACTAGT	2 cut(s)	623, 2717
SphI	GCATGC	2 cut(s)	222, 1906
SsiI	CCGC	7 cut(s)	6, 876, 883, 1164, 1522, 1733, 1777
SspMI	CTAG	7 cut(s)	342, 624, 963, 1112, 1673, 1856, 2718
SstI	GAGCTC	2 cut(s)	1462, 1672
StyD4I	CCNGG	7 cut(s)	257, 951, 1380, 1865, 2128, 2286, 2610
StyI	CCWWGG	5 cut(s)	90, 1087, 1422, 1647, 1807
TaaI	ACNGT	5 cut(s)	158, 1216, 1325, 1838, 2537
TaiI	ACGT	3 cut(s)	1971, 2082, 2268
TaqI	TCGA	7 cut(s)	240, 684, 1848, 1954, 2277, 2329, 2479
TaqII	GACCGA	2 cut(s)	1409, 2689
TatI	WGTACW	2 cut(s)	1152, 2316
TauI	GCSGC	5 cut(s)	8, 878, 886, 1167, 1525
TfiI	GAWTC	5 cut(s)	538, 1064, 2116, 2161, 2404
Tru1I	TTAA	6 cut(s)	270, 705, 1695, 2151, 2663, 2712
Tru9I	TTAA	6 cut(s)	270, 705, 1695, 2151, 2663, 2712
TscAI	CASTG	3 cut(s)	161, 438, 2533
TseFI	GTSAC	9 cut(s)	111, 158, 182, 199, 356, 718, 1417, 2426, 2570
TseI	GCWGC	7 cut(s)	478, 695, 1034, 1628, 1749, 1946, 1988
Tsp45I	GTSAC	9 cut(s)	111, 158, 182, 199, 356, 718, 1417, 2426, 2570
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	161, 438, 2533
Tth111I	GACNNNGTC	1 cut(s)	2282
Van91I	CCANNNNNTGG	1 cut(s)	958
Vha464I	CTTAAG	1 cut(s)	1694
VpaK11BI	GGWCC	2 cut(s)	1342, 1804
XapI	RAATTY	3 cut(s)	529, 832, 1281
XbaI	TCTAGA	1 cut(s)	1672
XceI	RCATGY	6 cut(s)	222, 1153, 1549, 1693, 1906, 2645
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1639
XmiI	GTMKAC	1 cut(s)	2329
XmnI	GAANNNNTTC	3 cut(s)	471, 1586, 2416
XspI	CTAG	7 cut(s)	342, 624, 963, 1112, 1673, 1856, 2718
ZrmI	AGTACT	1 cut(s)	2318
Zsp2I	ATGCAT	1 cut(s)	2059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.